Os11g0169100

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Revision as of 09:02, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os11g0169100| Description = Sec1-like protein family protein| Version = NM_001072381.1 GI:115484374 GeneID:4349884| Length = 6514 bp| Definitio...")
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Gene Name

Os11g0169100

Description

Sec1-like protein family protein

Version

NM_001072381.1 GI:115484374 GeneID:4349884

Length

6514 bp

Definition

Oryza sativa Japonica Group Os11g0169100, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 11

Location

Chromosome 11:3315660..3322173

Sequence Coding Region

3315872..3315919,3316422..3316565,3317322..3317474,3318095..3318604,3318700..3320235
,3320317..3320385,3321329..3321457

Expression

GEO Profiles:Os11g0169100

Genome Context

<gbrowseImage1> name=NC_008404:3315660..3322173 source=RiceChromosome11 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008404:3315660..3322173 source=RiceChromosome11 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggggtcggtggatctgatcgccgcctgcctcgactccatccgccagattggagatgagattgcagatgcactagtgtaccttgatgcaggcactctggaggcgtttcagtttattggagctttccccttgcttcttgagcttggtgctcgtgcaatttgcagcttggagaatgcatctccgcttgatgctgctgctgaatggcactcaagttttgcacatccagcaaggaagatagtagtgattacatcacgcctgcttagtgatgcacatcggtatattttgcgctgcctgggaaaccatggaactatttcacattgtactgtgttgacagctatttccgaggttggtcactcagcatatgttgattccccatttggaccagatgccttccgggagtatgagacattacttactcaggaccatgaggaacttctgaagaagtatgaaaagtcagatgagcacaaagataccactttttacacaggaaaagatttcacatcggatggtggtagatactccaattgggaatctggggtgcattatggctctaattctgaatctagcccaacaaaaaaggatttgtttgctgatgagtcaagccagctagaaactaaaggaaaaagattatctgtaactgtgactcactttccgatgattttctctcctatttcctctaggacttttgttttgccatctgaaggcacaatggctgaatcatgtttatcaaaccatcatgaagattcccttagtccagggctacctcccatatctactggtagatcttttgatggtgatgagattccccccggagtgacattgactgcccagttcctttaccatctggccagtaagatggacctaaagctcgatatattttcacttggagatacatcaaaggtcatcgggaagctgatgatggatatgtcaagtctatatgatgttggtcgtaataagagatctgctggcctgctgatcgtagatcgtacacttgatctccttactccttgtttccacggtgactcatttcttgataggatgctgtcctccttgacacgcaaggaagggacttcatcctattttgtgtccaaaaatccacaaactccaagcaagcattctgaagctactgttaaacgtatcccactagatataaaggtcccttttgaaaaggtcttcagcaaggaagaacctaagagtaggaccagtatgttacccgaaagtatcatgtcatttgtgtctggatggaactctgctgaagttgaatctgaagtaacctggctacctgattacgcggataaagctcatgatgacaaactcagcagtcaacatggtagtttaaatggttcattcctatccaattatgctggagtgtgctacttggaatcattactcgacagaggagcaaaagatgggttaatgttgattaagaaatggcttatggaagctttacaacatgagaagttatccttcccatccaaaggtcggcaaggagctgcctctgtttcagagcttcattctatggttcaaatgctctctcgagaccagttatccttagtaagaaacagaggggttatccaattggcactggctgctgaaatggctctccaggagcctcaaagttctcgctgggatgcctttacaagtgcagagagaatattaagtgtaacatctgcagagacaactcaaagtcttgccagtgagcttcgtgattttatcaacactagcacttcagttgaatctcacaagcaagctaataaaactgagtcctctcagggccttctaagtttccaggatgttttgcttctaacaattatcgggtatatcttggctggtgaaaattttcctacatcgattgctggtggtccattctcttgggaagacgagcggtctttgaaagatattgtggtggactctatccttgacaggccatcatctgtgaagctcagatttcttgttggcttggagaatgagcttgaagctaaagctagacctaaagatggtgacaaaagtaatgactccatcgaagcttctaagagtactgatgattttgatgaccaatgggatagctggggtgatgatgatgataatactgatgatcagaaggatgaagcttatggggacatgcaacttaagttggaagtacgagacagagttgaccagctttttaagttctttcacaatttgtccagtatgaggttaaggaaccaaactcttggagaaggcctagcagcactgagcagatttgagactgacatatactcaagaaaaggcttgctctataagttgctattagctgtcttggcaaggtatgacattcctggccttgaatatcactcatcagctgttggacgtttatttaaaagtggactggggaggtttgggctaggacagtctaaaccaagctttggcgaccaaagcattctcatcgtttttgttgtgggaggcatcaatgcccttgaggtccgggaagtcatgaaggcaatatcagacagcagcagacctgatgtggagcttattcttgggggaacaacccttcttaccccagatgacatgtttgagttgatgttgggctcatccagctttagttag</cdnaseq>

Protein Sequence

<aaseq>MGSVDLIAACLDSIRQIGDEIADALVYLDAGTLEAFQFIGAFPL LLELGARAICSLENASPLDAAAEWHSSFAHPARKIVVITSRLLSDAHRYILRCLGNHG TISHCTVLTAISEVGHSAYVDSPFGPDAFREYETLLTQDHEELLKKYEKSDEHKDTTF YTGKDFTSDGGRYSNWESGVHYGSNSESSPTKKDLFADESSQLETKGKRLSVTVTHFP MIFSPISSRTFVLPSEGTMAESCLSNHHEDSLSPGLPPISTGRSFDGDEIPPGVTLTA QFLYHLASKMDLKLDIFSLGDTSKVIGKLMMDMSSLYDVGRNKRSAGLLIVDRTLDLL TPCFHGDSFLDRMLSSLTRKEGTSSYFVSKNPQTPSKHSEATVKRIPLDIKVPFEKVF SKEEPKSRTSMLPESIMSFVSGWNSAEVESEVTWLPDYADKAHDDKLSSQHGSLNGSF LSNYAGVCYLESLLDRGAKDGLMLIKKWLMEALQHEKLSFPSKGRQGAASVSELHSMV QMLSRDQLSLVRNRGVIQLALAAEMALQEPQSSRWDAFTSAERILSVTSAETTQSLAS ELRDFINTSTSVESHKQANKTESSQGLLSFQDVLLLTIIGYILAGENFPTSIAGGPFS WEDERSLKDIVVDSILDRPSSVKLRFLVGLENELEAKARPKDGDKSNDSIEASKSTDD FDDQWDSWGDDDDNTDDQKDEAYGDMQLKLEVRDRVDQLFKFFHNLSSMRLRNQTLGE GLAALSRFETDIYSRKGLLYKLLLAVLARYDIPGLEYHSSAVGRLFKSGLGRFGLGQS KPSFGDQSILIVFVVGGINALEVREVMKAISDSSRPDVELILGGTTLLTPDDMFELML GSSSFS</aaseq>

Gene Sequence

<dnaseqindica>213..260#763..906#1663..1815#2436..2945#3041..4576#4658..4726#5670..5798#ccgtcgtctcgtctcgtctcctccgccgccgcgattcatccgacaccaccggcggcatctccggcgagcggcagcgccgaacacccccaaccccaccgagttctttacggctggtgtctcccctcccatcctcgctaccgcgtcgccggcgcacggggagggtgggggcgtggcggcgaagagattcctgggatctcaggggatagtggactatggggtcggtggatctgatcgccgcctgcctcgactccatccgccaggtcggatctcttcgcgacttctctctcttaccttgcctgctcggattcctcattgtttgttcgatttctttttattatcatgtaagagattaattttgtccgggttaaactgaatgtgtaagaagattcccagaattttcagtttctaattatctgaattttgcactttggagatgaatatgagactactgcgtttaattggactattggagcgatgaaattgttctttaaaaaaaaacccatctttacagcttcctgaccgtatttctttctcgttccaaaacgataaattacaggagctgcttaacttggtaaagatttatccttttagcttctgagctgacaagtcgctgttattcgttcgtgattaacttaagctgtggataactttgagaaaacaaattcctatttgatgatttgcatgtaaaactaatggactttatcttcgtggctttcactatagaaatttatgttctttttttggtctgttgctgctttgcagattggagatgagattgcagatgcactagtgtaccttgatgcaggcactctggaggcgtttcagtttattggagctttccccttgcttcttgagcttggtgctcgtgcaatttgcagcttggagaatgcatctccgcttgatgctgtgagattacttaaatcccttgccataaaagtcaattaattatactagtaataaagaatagatatggtaataatgcatactacctcccaaggtagttagccagtaagctaatagcaatgcctcccaaaagttgcaatgttgtctgctcagtagtaatttatgtgtcaaactgaatgcagcatgttgagtgcaccaaagctcaagcatttttagtgtgtgtctggcacatgagtggcaaagtttaggaagaaaccatagttgcaagtggcatttgtttcttgatttgtgtcaacttagagctaaggactactccctctatcccaaaatataaggcatggtcaaactcgtcacggtctccaaaactaatctttgactcataatttctcatatactataaagtttgtaggaacaaaattatagccatttgaaagtgtattcaaatgtcaatccaatgatactattagcaaataaaattcaatttatattatggtatggagggactacctttttggtcctatgacatcttgaatttctgtacttcatatttctttttcattctgaacttcttatagatgagaagcagtgcacctaacagccttcatgttaaccttagtgtcaaactcatattttcttatataaaaccataattttctttgttcatgtacaaaaagtaagaaaaaattatgcttttttttaatgacaaatgtgccatcctgttctttacatgatcaaaatgccgtaacttgtgtttggcaggctgctgaatggcactcaagttttgcacatccagcaaggaagatagtagtgattacatcacgcctgcttagtgatgcacatcggtatattttgcgctgcctgggaaaccatggaactatttcacattgtactgtgttgacagctatttccgaggtacttcattcctgcaagaatttgttactttgatgcctgtattgcttctgaaatgcttgaacatccagccattattttcctacaattatcttctgttcacatcaaaatggctttagattttattttattttattttttgcctggggcttaagttcctatttaatttcctttgaaaaaggtacatagtccatgttagtttccatattatcatgaaggtatcatatactatatctggattgtttgatttatcctttctccaggggatggtctcaacactcatgtatgtagtttgtattgttgcatgttgtccatttggaagcttatctaaaccattatttattgtatgaataatcttaatgtcctcttgaattatttgttgtacatagtatagctgaacacatatgagtgtattagtatgagctaatttgtggactttgttttgtttgcaacctgtggtaacttctgtggtgctcaaccaaatgttgataaacagcaatcttgcttcaacccatattataagatttttttttctttttgcaaaacttaagagtttttttattgaaagcaaaatcatcttaagttctgcaagcaggatttgaatcatttgtgatatattgcaggttggtcactcagcatatgttgattccccatttggaccagatgccttccgggagtatgagacattacttactcaggaccatgaggaacttctgaagaagtatgaaaagtcagatgagcacaaagataccactttttacacaggaaaagatttcacatcggatggtggtagatactccaattgggaatctggggtgcattatggctctaattctgaatctagcccaacaaaaaaggatttgtttgctgatgagtcaagccagctagaaactaaaggaaaaagattatctgtaactgtgactcactttccgatgattttctctcctatttcctctaggacttttgttttgccatctgaaggcacaatggctgaatcatgtttatcaaaccatcatgaagattcccttagtccagggctacctcccatatctactggtagatcttttgatggtgatgagattccccccggagtgacattgactgcccagttcctttaccatctggccagtaaggtaaagatttatcataagaacatatttcttactagtggcttcttatttttcattcatataaccacttagtgatccgtattacaaaacatgtgtagatggacctaaagctcgatatattttcacttggagatacatcaaaggtcatcgggaagctgatgatggatatgtcaagtctatatgatgttggtcgtaataagagatctgctggcctgctgatcgtagatcgtacacttgatctccttactccttgtttccacggtgactcatttcttgataggatgctgtcctccttgacacgcaaggaagggacttcatcctattttgtgtccaaaaatccacaaactccaagcaagcattctgaagctactgttaaacgtatcccactagatataaaggtcccttttgaaaaggtcttcagcaaggaagaacctaagagtaggaccagtatgttacccgaaagtatcatgtcatttgtgtctggatggaactctgctgaagttgaatctgaagtaacctggctacctgattacgcggataaagctcatgatgacaaactcagcagtcaacatggtagtttaaatggttcattcctatccaattatgctggagtgtgctacttggaatcattactcgacagaggagcaaaagatgggttaatgttgattaagaaatggcttatggaagctttacaacatgagaagttatccttcccatccaaaggtcggcaaggagctgcctctgtttcagagcttcattctatggttcaaatgctctctcgagaccagttatccttagtaagaaacagaggggttatccaattggcactggctgctgaaatggctctccaggagcctcaaagttctcgctgggatgcctttacaagtgcagagagaatattaagtgtaacatctgcagagacaactcaaagtcttgccagtgagcttcgtgattttatcaacactagcacttcagttgaatctcacaagcaagctaataaaactgagtcctctcagggccttctaagtttccaggatgttttgcttctaacaattatcgggtatatcttggctggtgaaaattttcctacatcgattgctggtggtccattctcttgggaagacgagcggtctttgaaagatattgtggtggactctatccttgacaggccatcatctgtgaagctcagatttcttgttggcttggagaatgagcttgaagctaaagctagacctaaagatggtgacaaaagtaatgactccatcgaagcttctaagagtactgatgattttgatgaccaatgggatagctggggtgatgatgatgataatactgatgatcagaaggatgaagcttatggggacatgcaacttaagttggaagtacgagacagagttgaccagctttttaagttctttcacaatttgtccagtatgaggttaaggaaccaaactcttggagaaggcctagcagcactgagcagatttgagactgacatatactcaagaaaaggcttgctctataagttgctattagctgtcttggcaaggtatgacattcctggccttgaatatcactcatcagctgttggacgtttatttaaaagtggactggggaggtttgggctaggacaggtgagttattagtttgtacttccttggttcctttgccaccactctgtagctatcctttctcacactcaatactatctgcagtctaaaccaagctttggcgaccaaagcattctcatcgtttttgttgtgggaggcatcaatgcccttgaggtatggtccatattctttggtttcaagtattcaatcataccagtatggcattattgaagctgtgtttctattatactgtttggtgtttaaatataaatatttgtttattttgtttaaaactacagtaagaatcctcaaatttgacctatattttctatgttttgctagtgtactggtagtgtggcactttcagaaccatcagttggtacacgattcctatcttcaaaatatcaggttacattcccatgtagaaaacatgaggttttagttagtgcactttgaaaagcgcataaaattgcactcatccaaataagagattacaaaccacaatagaactaaaaggaacttgcaaaaagttctctttgtaaagaaggtacatataatgtctgatccaatctgccgccaaaacatttgttagaatggtaaggaacctttctatattggaggagatatggaaagggatatggatggttgtattggtatatcaatatccgttgggtgtggattatccaatattttttaactgattatccagtgcttgttactccctccccaaattgatcatcatataatagaaactaaaatttctcaaattgatcatcttataaccgcatggacacggatttcatcggagtgcaattaatacaacatgggagaatgtgtatatttgtgcattatgttttaatcaatgcatgcactgtgggagaatatgtgcatattgtgcatggcgtcttaatcaatgcggtttaaattatcctaggtcttggtacacaaacattatacgatcaatttgggatggagagagtatttggactatctgcaacttttcccatctatgattgttccttttctctgtgcaatttgtgcttatgtgttggcaaagtatatatcgcagtgtgaaaaagtaaatctttaacaaattaaatgatcttttctatgcaaggtccgggaagtcatgaaggcaatatcagacagcagcagacctgatgtggagcttattcttgggggaacaacccttcttaccccagatgacatgtttgagttgatgttgggctcatccagctttagttagtctcaagcttaattgttgagaagctcagtccagttaacaccaatgcatctgccttggacatcttaagaatgatccagatcatttctccggaagttctttctccaaacgtggcagttcagatactgaaactctaaagattgtatcttggtgatgataccaacagcaagcataggcaattcaattcataagctcttcagatttttaatcgcaactgaatgcagcgatacagttcgtcttttgtaggacagccattgaaaacaatgacttttgagaatcatcttctggacattcattcatgctttgctcaaaagctggagtctactgctttggatcagtcactgtatttgcaagtgaagtcaaatatgaagtgaccctgctgactacacagtaaacactcaaaacaaggtgtaattctgtcttaagttctcttgctcctagaagtagctgctcttccgttcagaagccatatgtaaatttaatctatgtaaattgtttgctgttgattcgaaaatctttggtgttcactggtcaggagaactgtcaaattaggtacagcattgtaactgaaagaacatcattactcagttcagtgaactgaagtgtacatgcactatgttgtgacttgtgagtaatatcacaacccccaaaaaaaggcaaataaaattaggaatagtttgttatgttccagaaaaaaaataaacatatcataatgtgtg</dnaseqindica>

External Link(s)

NCBI Gene:Os11g0169100, RefSeq:Os11g0169100