BGIOSGA029031

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Revision as of 08:08, 26 June 2012 by 127.0.0.1 (talk) (Created page with "{{IndicaGene| GeneName = BGIOSGA029031| Description = cDNA clone:001-038-D09, full insert sequencecDNA| Definition = Oryza sativa Indica Group BGIOSGA029031, complete gene....")
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Gene Name

BGIOSGA029031

Description

cDNA clone:001-038-D09, full insert sequencecDNA

Definition

Oryza sativa Indica Group BGIOSGA029031, complete gene.

LocusTag

OJ1191_A10.128

Ensembl Transcript ID

BGIOSGA029031-TA

Ensembl Protein ID

BGIOSGA029031-PA

Length

6644

Source

Oryza sativa Indica Group

 ORGANISM  Oryza sativa Indica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 8

Location

Chromosome 8:27909748..27916391

Sequence Coding Region

27909748..27910050,27910178..27910274,27911045..27911145,27911528..27911584,27912981..27913057
,27913231..27913297,27915955..27916065,27916140..27916237,27916322..27916391

Genome Context

<gbrowseImage1> name=IndicaChromosome08:27909748..27916391 source=RiceIndica08 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=IndicaChromosome08:27909748..27916391 source=RiceIndica08 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>ATGGCCTCGCTCCTACCCAGTCCGGTGTTCCCCGCCGCCGCCGCCGCGGCGTCCACATCCTCGTCCTCGAGGTGCCGGTGTCGCATCACAACGTCATCTTCGGCGCGCGGTTGGTCCTACTGTCAGGGCTGGAGACTCCATCACCGGGTTTGGGCCGCCCAGGCTGCTGATCAGCAGCAGCAACAACAAGAAGAAAATGAAGACGGTGTAGTCGACAGCAACGTGCTCCCCTACTGTAGCATCAACCGGAAGGAGAAGAAGACTATTGGGGAGATGGAGCAGGAGTTTCTCCAGGCGCTGCAGGCCTTTTATTACGACAAGAAGGCCGTAATGTCGAACGAGGAGTTCGATAACCTCAAGGAGGAGCTTATGTGGGAAGGAAGCAGCGTTGTGATGCTAAGCCCTGATGAGCAAAGACTTTTGGAAGCATCCATGGCTTATGTGGCTGGCAACCCCATTATGACAGATGCTGAATTTGATGAACTAAAGCTGAGATTAAGGAAAGAGGGAAGTGAAATCGTACAAGAAGGTCCAAGATGCAGTCTTCGAAGTCGAAAGGTCTACAGTGACTTGACTGTCGATTACTTCAAGATGTTCCTGCTAAATGTTCCAGCAGCAGTTGTAGCTCTGACACTATTTCGTCTTCACAGATTCTTCTTCCTGGATGATTTGACAGGTTTTGAGATCACATATCTTCTTGAGCTGCCAGAGCCTTTCAGTTTCATCTTCACATGGTTTGCCGCACTGCCTCTAATATTTTGGGTAGCACAGGCAATTACGAGTGCCATAGTGAAGGACTTTTTAATTTTGAAGGGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATACTGTCTGTGCCTAGCGGTGGTGCAAGAAACAGTGTGAAATGTGCAAATTGTAGCAGTTCATTGGTATACGATTCTGCATCCCGATTGATTACACTCCCAGAAACAGCTGAGGCTTGA</cdnaseq>

Protein Sequence

<aaseq>MASLLPSPVFPAAAAAASTSSSSRCRCRITTSSSARGWSYCQGWRLHHRVWAAQAADQQQQQQEENEDGVVDSNVLPYCSINRKEKKTIGEMEQEFLQALQAFYYDKKAVMSNEEFDNLKEELMWEGSSVVMLSPDEQRLLEASMAYVAGNPIMTDAEFDELKLRLRKEGSEIVQEGPRCSLRSRKVYSDLTVDYFKMFLLNVPAAVVALTLFRLHRFFFLDDLTGFEITYLLELPEPFSFIFTWFAALPLIFWVAQAITSAIVKDFLILKGPCPNCGNENLSFFGTILSVPSGGARNSVKCANCSSSLVYDSASRLITLPETAEA</aaseq>

Gene Sequence

<dnaseqindica>1..303#431..527#1298..1398#1781..1837#3234..3310#3484..3550#6208..6318#6393..6490#6575..6644#ATGGCCTCGCTCCTACCCAGTCCGGTGTTCCCCGCCGCCGCCGCCGCGGCGTCCACATCCTCGTCCTCGAGGTGCCGGTGTCGCATCACAACGTCATCTTCGGCGCGCGGTTGGTCCTACTGTCAGGGCTGGAGACTCCATCACCGGGTTTGGGCCGCCCAGGCTGCTGATCAGCAGCAGCAACAACAAGAAGAAAATGAAGACGGTGTAGTCGACAGCAACGTGCTCCCCTACTGTAGCATCAACCGGAAGGAGAAGAAGACTATTGGGGAGATGGAGCAGGAGTTTCTCCAGGCGCTGCAGGCCCGTGCCCTGCCCTGCCCTTCCCTCTTGTTGAATCCGGCTACCTCCTACCTTACATACACTATACTTACAAGTCAATTGAGTCACAATTTAATTCGATTAGATTCCTCTTTTTCCTTCTCTTTAGGCCTTTTATTACGACAAGAAGGCCGTAATGTCGAACGAGGAGTTCGATAACCTCAAGGAGGAGCTTATGTGGGAAGGAAGCAGCGTTGTGATGCTAAGTAAGTGGTATAAAATAATATTCCTTTTCTTCTAGCTTGTACGAGATCCCGGCCCTTACTGTACACTATAAGTGTGCATGCCGCTGAAAAGAAAAAGATTATTGTTGGAAATTCAGAGATAATCCTATCTATATCCCTGTAGCTAGTTTATTTAGCTGCTATCATTTTCTGGCTGTCTGGTTGCGCATGTCGTGTCATGCGCCGTGATCGGGGCGTGTGGGATGGCACACACTGAGAACCGATCATGGTGCACTAAGGTGTGGATCGTGGCGATTTGCCCATCTGCATATATCGCAATGGAAGAGAAACATAAAATGGCCGTCTTATCGCAGCACAAATACCTTGTGTTCTGGATATACTAGTTCATATCGTCTTGTGTTCGATATACGACAGTGAGTTTGTGATAGCGTTCGCTGGATTGGTGCCGTTATATTATGTACACCCAATGCAAGTAACATTGGAAGCTCAATTCTTAAGACAACATATATCCATCATTAAGTGAATGCGAGACATCCCTGCTAATTTTCAGGAAAAAGAGAAAATGATTGTAAGCATTCTTATCAACACTGCACACTTTATATTTTGAGTTTCTCCAATAACATTAAAACGATAGGAGAGACAGGAAAATGGATGAACTGCAAACAGAGGAATGTTTGTGTCCAATTTATATAAAAAAAAATACTAGGAGAGGTTTTTTTTAATTCAGTCATGCTAATGTTGTCATGTTAATGCTTAATCGTTGCTTTTTATTTAATATTTTTTTTCGTCAGGCCCTGATGAGCAAAGACTTTTGGAAGCATCCATGGCTTATGTGGCTGGCAACCCCATTATGACAGATGCTGAATTTGATGAACTAAAGCTGAGATTAAGGGTTGGTCTTTCTTGTCCCTAGTAACCTTATACTTGCTAAAATGTGTAATATTAAGTGCTGTAAAAAATGAATGCTATTCTACCTTATTATTTAATATCAGCGATAGATTTGGGGCTCCGCTAATTGTACTTCTCAGTGCTGTAGCATGGTAATGATGCTAAAGTTGCCTTATAAAAAACATGAGTTATAAGGCTCAGCATTTTGAGTTAAACGGTAAATTTTAGTAATTTCTATCATGATATTTGGTTGTCAGTTAGCTTCAGTGTAAAAATGAGATTTAAAGATGAAACCATACATATAAAAGACATACATTGTAGCAGTAATGTAAATCCGAGACTGAACTTACCTGTCAATCTGTTATTATTTTTTTTCTCTTGGCCAGAAAGAGGGAAGTGAAATCGTACAAGAAGGTCCAAGATGCAGTCTTCGAAGTCGAAAGGTTGGGATTGACCTATTTGTTTTATTATACTAATTCATTTTTTTTTGTAAACTGCAGTTTAGTTATTACACTAATCTATTGAACATAACAGATATGGGGAATTTACAATAGTAAAGCTTCAGTTTAGCAGCCCTAAAAAGTAGTTAGCCAAATGGCAGTCCATTGTTGTGGAATAAAAACTGTTGAACATGAAAAGTATGGTAAGCAATTTCCATTTTGATAAGCATGCTGCAATCATCTGGTTAACAAAAAGTATTGTGTTTAAATTATGCCTCTTCGAAGAACTCGGCCCCAAAGGGAAATACCTCCCCAGGGTAGTATAATTAAGAAGTATATGAAACCGGGGCCAAGAAAGGTCACGAAAGCCAATCCTCCCGATGATAAATCCTAAGCTCCATTCGAGACACTCATGGCTATGATTGACCCGATCTTTCGGTGAGTTGAATATAACTACGATTTGGGAGAAACGTTGACGACCCCCTACAACCATACGAGACATTGTTGTGTTGCGCCTTAGCGATCGATACATCTCTCCGTGGGTTGTTGATCTAGCTGGTGTAGATCAACCTTAATCCTGCAAGTAGATCGAAGAAACAAGCAAGAACAAGCTAAAAGCAATCTAAATTGCAAATAAGAATTGAATACAAATGATAAGTTGGGGTTTCGTAATGAGCAAATCAGCGATTTAACCGATCACGGGATTACACAGCAAAGTAGCGAAACTAAACTTTAATATAAACAAAACCCTATAAACCCTGAAGGGGTACCTAGCTATTTAAGGCGGTGGGTTGACGACCTAGGGGCCCCTAGGGTCGTGTTCCACCTGGTTGGGGTCCACCCCACATGGGCCTCACTTGGGCCAGGGTCCCAAACAAAGTTACAAGCCCAAAGGCCCATGACAAGTGGCGCAATACCTTATTTCTCTATTTGCCGATGACTTACTAGGAATTTGGAGATGTGGAATTTGGAGATGAGGTTGGATCTGTTGGAAAGAGGATTCCAAATGCTTTCCATCAAGTACTCATGGACCCAAAACAGAGCTTGTATGCACATTTGGCGGTAGTTTGAAGTCAGCACTGTAGCAGGTGGCCGAATTAGATTCCAGAACTTGGTCAACTTGATCTTGATGTGAGCGACGGTTGTATTAATAGTAACCATGGTCACATCTCCCTACATGGGGAGCTTCCCCTGTGTAGATATCTATAAGAATATTTCCAGCAACATGCTATGATCTAATGTCAAAAACCATGTCATGTCAAAATTAAAACAAGAATAGTTTAGCTTAGAGAACTATTTTGTAGAGACATGACCTTATTCACATCATCACTATTTTGGGTGCTAATGTGATGCTGTTTAGTTAATCTATCCTGGAGTAACAAATTTGTTATTTTCGCAGGTCTACAGTGACTTGACTGTCGATTACTTCAAGATGTTCCTGCTAAATGTTCCAGCAGCAGTTGTAGCTCTGACACTGTGAGAATCATATGACATGATGTCAGAGATACATTTTTTTTTTGCATTACGCCATGTTTAATATATTTTTTCTTGACTAGATTTATGGTCATTTTTCACTTCGATGAAGAATCATTATTGTTTTTGGCAGTTTTGTTTATGTGTACTAAATACTGTGTTTATATCTAATCTAGATTTCGTCTTCACAGATTCTTCTTCCTGGATGATTTGACAGGTTTTGAGATCACATATCTTCTTGAGGTTAGTTCTAACAAATTCAAGATAATATACCAATTGAGATCCATACAGTACTGCTCACTGACATGTGGGCCCGAGGGTCTGTGGGGCCCTCTCTCATAATAATACTTCTTCCTTCCCATAATAAGTTCATTTTTGCCTCCTATTTGTCCTAAAATAAGTTCACTTTTAAGCAATCATTGTATCGTAATTTGTGAAAGTAGGGTATAATTGCACTGGGATTTGGTAAAGTGAGAGTATTATAATCTTTTTTGGTTTTGTATTTGTATGTGTGGGATGGGTAAAAAATGAACTTATTTTAGGATGGAGGGAGTAGCTAAGTCACCAATATATAATGTTTCTTTAGTTCTTTACATGTATAAAATTCTGAGGATGTTATATATATGACATCCTCAGGATTTTATACATGTAAAGAATTAAACATACATTATAGTCCTATAATTTGTTCACTCACTTGAATAGATTTTGTAAAGTCAGAATTAGGTGCGACCTTTATACCTCTATTTTACCGTAATCAATGGGCCAGGTGGCAGTTAAAGACGACGATTTGGTTGCCCGGCTTGGTTTGCTGCATGGACCTAAGTGCGCGCTAAGACATGTGCATGATGGGGGGGGGGGGGGTAATTCCAGCTAGGAAGTGAGAGTTAGGAGTGATATGATGGAGGGAGTGAGGGGTCAAAATTTGTAATTTGCATAGGAGACAGGAGGGGAGGGCTGAGGGCAGGCTTGTTTGGGCCCATCTTTCCATAGAAGTAATGGGTGGTGGATACATGGTTTTCAATTTCATCGTCTCACTCAAGCACCCGAATTTTGGGAAAGATTGAGCACCCTCTAACCACTACCATATGCACCGCATGCTTTGCTGCCTCTGCCCCTCTGCATATTGCATGCATACTCCATCCTCTCTCCCACTTCCCCTCCTCTAACCACTTCATTAGCAAATTTTAAATGTTTTTTTCTCCTAAATTACTTATGCAATCTACGGTCCAATTTACATAATTATATTTGTTGTAATTAAATTTTTACAACAAGATCTCACATATGATTTAATTTTTGATGAAAAAATAGAAAATATTATATTCCTTATTGAAATATTTTTATATAATATATGAAAAATCGAGTTGTAATTGTTGAAACATCACAAAATATTTACTGAAACATCCAAAAAACACCATGTGCAACATTTACAAATGAACTAGTGAAACATTAGAAAATACTCATTGAAACATCCAAATAACATCATGTGCAACATAAAACAGATTCGTTGCAACATAAAGACTTAAAATGTGCAATACAGTTGAATTCAAATTGAAACATTCACTTGTACGTGAAACATCAAATTACAATGGTTGAAACATACATATATTTTTTTCATCATAATACAATCATGTACGGTCTTGTTGTCGTGATTTAATTGCGATGAATACAACGGTCTAATTGGATTTTAGATTAGATTATTAGTAATTTAGGAGAAAAAAATATTTGAAGGTTGCAAAGGGAGCTTCATGCATGTACAGAGAGAGGTCGGTGCAGGCTGTGCACACTGCACAGGGAGAGAGAGAGTCCATCAGGGTGACCAAGCACAAGCATTTTTGACATCAAAGTTATGGTCGGTGGCCTCATCTAACTTTATTTCAACAGTACACAATTTCATAAATGAGTAGAAGTAGAGCAGAAATCACAAATTATTGTCACTTACATCAGAGGTTTGAGGAGATGATTGCCCCTTAGGGATGATAGTTGATAGAATATATGAAGTGTTCATAGATTATATGGTCCTACAATACATGGGCCTTGATATAACATATTAGTCCAACAACACAAGGTCACGGTTCACAACCAGTTGGGACATAGATGTAGGCATGCTGCATCGAACATTATGTTCGCTACCTCTTATTAGTGACCAAGAATAATTGATGGCGTATCCGCATCCGATGTAATATTCATATCTGATGCTAATTAGAGTACACTGTATTCATATCCGATGTAGTATCTGACAGTGGTATGGCACTGTTTGAAAGCATCCATGCAATGTGGGCCCTCATACAGTAGAACGTGCATCATCACCAGTAAGGGTAATATGGAAAGTATGGGAATATAGTGAGGCACCTATGGGAGGTAGAAAAGTAAAAATAAAAAATAAATGGTTTATAATATAGCAGAAATTGTGTTGGTCTTTTTTTCATGAACATCATTTACCCTCTACATAAGCAGAGTAAATATCTTTAACTGTTCTTTGCCAACCTGCTAATGTCATTATGCTTCTTCCATATTTTCCAACAAGCTATAAGAATATGTCACGAAACATCTTCCTGTAATGGAGTTGGCTGTTCAAATAACGCCATTGATTTAACTGTGGGCTTCAATTGATGATGCCATACCTGATATATGCTTTCCATGCCATGTATGGATTTTTCCAGAAAATAAATATTACAGCAGTGCCACGATAACCATCTAATAGTAACCTACAATGTTGTTTGTGAATACTGAGCATGGTAGACTCCTGTAATTCTATATCATACGTCACTTTTGGAACAAACTGTCTAATTCTACATCAGACCTTACAGTGGATCTGATGCCATAAAACAAACTTTGTTATTTACTGATTTTTTTAGATAATAAACATTGTTATTTACTGATTACATTCATGAATGATGCAGCTGCCAGAGCCTTTCAGTTTCATCTTCACATGGTTTGCCGCACTGCCTCTAATATTTTGGGTAGCACAGGCAATTACGAGTGCCATAGTGAAGGACTTTTTAATTTTGAAGGTATTTTCATTGTCTTATCATACATCGTGGGCATGTTAAGTATGGTACAAAATGACAAATTTTTTGATAACTAGGGACCGTGCCCGAACTGTGGCAATGAAAATCTTTCCTTCTTTGGGACTATACTGTCTGTGCCTAGCGGTGGTGCAAGAAACAGTGTGAAATGTGCAAAGTATGGATTTGAAATCTAGTCCTCGGTTTCTGATGCATTCTATCTTATATTTTAACTAATGTGGTTACTTTGTATGTTTATCAGTTGTAGCAGTTCATTGGTATACGATTCTGCATCCCGATTGATTACACTCCCAGAAACAGCTGAGGCTTGA</dnaseqindica>

External Link(s)

EnsemblPlants:BGIOSGA029031