Os11g0175900

From RiceWiki
Revision as of 09:02, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os11g0175900| Description = Conserved hypothetical protein| Version = NM_001072413.1 GI:115484438 GeneID:4349921| Length = 4623 bp| Definition ...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os11g0175900

Description

Conserved hypothetical protein

Version

NM_001072413.1 GI:115484438 GeneID:4349921

Length

4623 bp

Definition

Oryza sativa Japonica Group Os11g0175900, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 11

Location

Chromosome 11:3765902..3770524

Sequence Coding Region

3766045..3766545,3766639..3767091,3768082..3768204,3768634..3768934,3769095..3769456
,3769929..3770522

Expression

GEO Profiles:Os11g0175900

Genome Context

<gbrowseImage1> name=NC_008404:3765902..3770524 source=RiceChromosome11 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008404:3765902..3770524 source=RiceChromosome11 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>tctctgttcaaaagacttcttcagatggtgagaaacttgagagccgaatcagatcgtatgcatgcattggcatgtatttgtcggactgctctttgtgttgatctttttgcaaaggagagtgttcgaagaggtcagaagcctgttccaggaacagatgtgatctctctttttgaggatgtaagggcgaaggacgacctaaacagcattacaagcaaaagcttgttcagggaagagctggttgcttccctggttgaaagttgtttccagctatcgcttccactacctgagcagaataattctggcacagagagcagagttataggagcattagcctatggaactggttatggtgcattgaattggacagaacctgctttggatgtggtagaagtttgcaggccttgtgttctctgggattgtaatgggcgcacctatgcaattgattgctatctgaagttacttgttcggctttgtcatatatatgatactaggggtggtgtaaagacaattaaggctggtgcatcccaagatcagattctaaatgagacaagacttagaaatttacagctgcagcttatcagggatcttcgtgaggtccataccccaagaatatcatcacggttgatatgggcgatttctgaacacttcgatcttgaaggtctggatcctctcttagctgatgacccagaggatccactgaatattatcatatctaacatgcacaagattttattcaacaccgaatcctctaccactacatcgaataggatacaagatatgcagtctgtcctcatatgtgcccaacgtttgggaacaagaaatgcaagagctggccagctcctcagtaaagaattggaagaatatagagcaagtacttcagctgattttgtcaccaaacatcagtcacgttatgtcttgcagataataaaatatgtgacaagccatccagataacaggtgggtgggcgtaggtgatgccacaggggattatccatttagccaccacaaactcaccgtccagttttcagaggcgtctgctgctcaagacaggaaattggaggggttagtacataaagctattctggagctctggaggccaagtcccacacagttgagtctgctacagacaaaagggattggtactttgcataaagagctcccaaaagcgtatactttgaccggcagcagtgatccatgctatattgaagcgtatcatttggcagatccaactgatggcagaatcacactgcatctaaagatcttgaatttgactgagccggagctcaacagggttgatatccgagttggactctctggagcactgtattacatggatggattttcccgcaccgttcgacacctccgtaatcttgtttcccaggatccagtccaaagtagtgtaactgtcggagtttcacattttgagagatgctccctctgggttcaagtcttgtactacccatttgatggaagtgtaggatctactgattatgaaggagattatgaagagagctcacaaatgacgaggcaaaagcgcgcatttcgggcagagcttggggagccagttgttttgcgctgccagccatacaagatccctcttgctgaacttctcttgccatatgaatgctctccagttgagtatttccggttatggccaagtttgccagccatggtggagtgcactggcacatacacatatgaaggcagtggtttcaaggccactgctgctcagcagtatgatagctctcctttcctcagtgggttgaagtcgatttcttcaaagcctttccatcaagtttgctctcatttcatcagaacagtagctgggttccagttatgctacgctgcgaagacttggtttggtggatttgtgggcatgatgatctttggtgcaagcgaggtcagccggaacgttgatctgggcgacgaaacaaccacaatgatctgcaaattcgtagtgcgtgcatccgatgaatcgatcacaagagagatcgaatcagacctccagggctggatggacgatatcaccgatggcgccgtggaatacatgcccgaggatgaggtgaagagcgcggccgctgagcggctgaagatctccatggagagaatagccctgctcaaggcagccaaaccgaaggtgccgcctgcgaaaacaaaggaagaagaggaagaggagaagaagcaaaacgaggacctggatgaattcgggaaccccaagggcccctcgacgctttcaaagctcacggcggaggaagctgagcaccgtgccctccaggcggccgttctgcaggagtggcatcagctgtgcaaggagaaagccatgaaagcacagtga</cdnaseq>

Protein Sequence

<aaseq>SLFKRLLQMVRNLRAESDRMHALACICRTALCVDLFAKESVRRG QKPVPGTDVISLFEDVRAKDDLNSITSKSLFREELVASLVESCFQLSLPLPEQNNSGT ESRVIGALAYGTGYGALNWTEPALDVVEVCRPCVLWDCNGRTYAIDCYLKLLVRLCHI YDTRGGVKTIKAGASQDQILNETRLRNLQLQLIRDLREVHTPRISSRLIWAISEHFDL EGLDPLLADDPEDPLNIIISNMHKILFNTESSTTTSNRIQDMQSVLICAQRLGTRNAR AGQLLSKELEEYRASTSADFVTKHQSRYVLQIIKYVTSHPDNRWVGVGDATGDYPFSH HKLTVQFSEASAAQDRKLEGLVHKAILELWRPSPTQLSLLQTKGIGTLHKELPKAYTL TGSSDPCYIEAYHLADPTDGRITLHLKILNLTEPELNRVDIRVGLSGALYYMDGFSRT VRHLRNLVSQDPVQSSVTVGVSHFERCSLWVQVLYYPFDGSVGSTDYEGDYEESSQMT RQKRAFRAELGEPVVLRCQPYKIPLAELLLPYECSPVEYFRLWPSLPAMVECTGTYTY EGSGFKATAAQQYDSSPFLSGLKSISSKPFHQVCSHFIRTVAGFQLCYAAKTWFGGFV GMMIFGASEVSRNVDLGDETTTMICKFVVRASDESITREIESDLQGWMDDITDGAVEY MPEDEVKSAAAERLKISMERIALLKAAKPKVPPAKTKEEEEEEKKQNEDLDEFGNPKG PSTLSKLTAEEAEHRALQAAVLQEWHQLCKEKAMKAQ</aaseq>

Gene Sequence

<dnaseqindica>3980..4480#3434..3886#2321..2443#1591..1891#1069..1430#3..596#tgtctctgttcaaaagacttcttcagatggtgagaaacttgagagccgaatcagatcgtatgcatgcattggcatgtatttgtcggactgctctttgtgttgatctttttgcaaaggagagtgttcgaagaggtcagaagcctgttccaggaacagatgtgatctctctttttgaggatgtaagggcgaaggacgacctaaacagcattacaagcaaaagcttgttcagggaagagctggttgcttccctggttgaaagttgtttccagctatcgcttccactacctgagcagaataattctggcacagagagcagagttataggagcattagcctatggaactggttatggtgcattgaattggacagaacctgctttggatgtggtagaagtttgcaggccttgtgttctctgggattgtaatgggcgcacctatgcaattgattgctatctgaagttacttgttcggctttgtcatatatatgatactaggggtggtgtaaagacaattaaggctggtgcatcccaagatcagattctaaatgagacaagacttagaaatttacagctgcagcttatcagggatcttcgtgaggttgtggtcgttgttttttatcttaaatatttaaagcacgaacataatagcgtattttattttggtgcaattctacattgttctgtactattctatgctccattcatcaatcaaataaatactagtatgtcacaatttctattctatattattttccatgcgaacatttattaggtgttactttaacatgtctcgtgtatctaactcctgtaaaaacttatgcattaaaatcaacctcttctataagtcttgtatcttatttagaaaatcagaaaagcatctgcttgtcaatgctttaacagtgtatatgtgctcttgctctatgttattttacacagccatttaaaagatgccctccaagttggaactggttaataaaagaacaatagcgatgtagtttctctatttactttttgacgcttttaaagtacaggttactctgccaaattgttaaatcttaatttcttttcaggtccataccccaagaatatcatcacggttgatatgggcgatttctgaacacttcgatcttgaaggtctggatcctctcttagctgatgacccagaggatccactgaatattatcatatctaacatgcacaagattttattcaacaccgaatcctctaccactacatcgaataggatacaagatatgcagtctgtcctcatatgtgcccaacgtttgggaacaagaaatgcaagagctggccagctcctcagtaaagaattggaagaatatagagcaagtacttcagctgattttgtcaccaaacatcagtcacgttatgtcttgcagataataaaatatgtgacaagccatccagataacaggtgagtgtattttggaacttgagtaacaaattctccgcggaggttgaagtgttcacatagataaagaacgaaaatattatacctgaaagaaagttgtctactagaacatgcattatgaaataaatataataattgtctacttttctgatatgtcattcaggtgggtgggcgtaggtgatgccacaggggattatccatttagccaccacaaactcaccgtccagttttcagaggcgtctgctgctcaagacaggaaattggaggggttagtacataaagctattctggagctctggaggccaagtcccacacagttgagtctgctacagacaaaagggattggtactttgcataaagagctcccaaaagcgtatactttgaccggcagcagtgatccatgctatattgaagcgtatcatttggcagatccaactgatggcagaatcacactgcatctaaaggtaaggcctgatggacttcttttctctatttgatttcatactttttattgaattaatgtttctgtcatggtcactgttaaatgctggttctgtcatgataatttctgaacttaaaatacactaatatttgaccccagcatggcaatagtttttttttgttgtaaatttgttgtggttttctgccaaccgtacaactgtttttttattatccaagttatggagtggcgttcttatgcttatgcaagcagacatactactggaagtctgccaatatattctaatttgtggggacatgttagaacacttatccatcttggtagattactggattggtttgaagttaaaataactgcatatattgcttgctctaagatctgttattgcttgtttattattaccatgttttttgactagtttgtgttgttgcagatcttgaatttgactgagccggagctcaacagggttgatatccgagttggactctctggagcactgtattacatggatggattttcccgcaccgttcgacacctccgtaatcttgtttcccaggtgcttctatggatccaattgtacctatttttctattgttctttctatgaacttgactttcaatgacccagcaataatttgaaatagtactaatataacactattgtcaagactgcaacatcaaccagaattggagcaaacaaactctacgattatagttttgcttatgactaaatggtttgactatagtttaaactgatgttttctttccctagtaatcttttcagttttgttttgtccagaacttaaataccgctagtgatcttttcagtttagttttgaccagaacttaaatattacttcatccagtatagtaaataatctgaccagcctgttgatagttcaatattctataacgcacacttacagaacattcagcttaacttcggactatgaaatccaccattgcgctgctgtttaaacttttaatttattcttctcttctgtttattagtgcattgctgcattagaatcaaatgcctgaaataaccagcaaatgcactaaaatctctatttggcaaactttttatacttttggaagtaacagactactcctgaaaccctttcttttggagccataacagcaaaatcttttggagttaatatataggatcatactactagtaggtacctgtaaatcagtacatcaagcccgctctggccttgatggcttgtttggaaatttgagggaagaggattgggagtttagatgagggaattgatggtgagatcaacatgttaatttgatttttaatcccaaatatttttcccattcctctaaactcccaatccctcctaaaatctcccatcaaccttgagatttttaggttgtataccttgttccaggatagcattgtcaacaacatacaaacatgcgataattggcagactaaaagggtgatggtagaataattttaacattggattatagatcaactaattcaaaatttaatctattttatgtgtaaaaatgcctttttaattctgcaggatccagtccaaagtagtgtaactgtcggagtttcacattttgagagatgctccctctgggttcaagtcttgtactacccatttgatggaagtgtaggatctactgattatgaaggagattatgaagagagctcacaaatgacgaggcaaaagcgcgcatttcgggcagagcttggggagccagttgttttgcgctgccagccatacaagatccctcttgctgaacttctcttgccatatgaatgctctccagttgagtatttccggttatggccaagtttgccagccatggtggagtgcactggcacatacacatatgaaggcagtggtttcaaggccactgctgctcagcagtatgatagctctcctttcctcagtgggttgaagtcgatttcttcaaagcctttccatcaagtttgctctcatttcatcagaacagtagctgggttccaggtaagcattggataatctgttacactgttgccttgaatctttccttacagaattaccatggctattggactataacaaatgaatcttctacagttatgctacgctgcgaagacttggtttggtggatttgtgggcatgatgatctttggtgcaagcgaggtcagccggaacgttgatctgggcgacgaaacaaccacaatgatctgcaaattcgtagtgcgtgcatccgatgaatcgatcacaagagagatcgaatcagacctccagggctggatggacgatatcaccgatggcgccgtggaatacatgcccgaggatgaggtgaagagcgcggccgctgagcggctgaagatctccatggagagaatagccctgctcaaggcagccaaaccgaaggtgccgcctgcgaaaacaaaggaagaagaggaagaggagaagaagcaaaacgaggacctggatgaattcgggaaccccaagggcccctcgacgctttcaaagctcacggcggaggaagctgagcaccgtgccctccaggcggccgttctgcaggagtggcatcagctgtgcaaggagaaagccatgaaagcacagtgaggttctgttttttttttcctttttttttggcatgcggcacatgtacaattttgtatctgtttctcattttttgcccccaatttgtgtatgtattacatgtgtgtcccttttacccccattttgtgtatgtatgtattatcagt</dnaseqindica>

External Link(s)

NCBI Gene:Os11g0175900, RefSeq:Os11g0175900