BGIOSGA033930

From RiceWiki
Revision as of 08:44, 26 June 2012 by 127.0.0.1 (talk) (Created page with "{{IndicaGene| GeneName = BGIOSGA033930| Description = Japonica Group Os11g0508600 (Os11g0508600) mRNA,| Definition = Oryza sativa Indica Group BGIOSGA033930, complete gene....")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

BGIOSGA033930

Description

Japonica Group Os11g0508600 (Os11g0508600) mRNA,

Definition

Oryza sativa Indica Group BGIOSGA033930, complete gene.

LocusTag

NM_001074487.2

Ensembl Transcript ID

BGIOSGA033930-TA

Ensembl Protein ID

BGIOSGA033930-PA

Length

2201

Source

Oryza sativa Indica Group

 ORGANISM  Oryza sativa Indica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 11

Location

Chromosome 11:14915289..14917489

Sequence Coding Region

14917438..14917489,14916674..14916710,14916005..14916377,14915786..14915905,14915339..14915633
,14915289..14915323

Genome Context

<gbrowseImage1> name=IndicaChromosome11:14915289..14917489 source=RiceIndica11 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=IndicaChromosome11:14915289..14917489 source=RiceIndica11 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>ATGGCTGGCATGTCTCTTCAGCATCCCTGGGCCTTCGCCTTTGGTCTCCTAGGCAACATCATCTCCTTCATGACCTACCTGGCCCCACTGCCGACGTTCTACAGGATCTACAAGAGCAAGTCGACGCAGGGGTTCCAGTCGGTACCCTACGTGGTGGCGCTGTTCAGCGCGATGCTGTGGATCTACTACGCGCTGCTCAAGTCCGACGAGTGCCTCCTCATCACCATCAACTCCGCTGGCTGCGTCATCGAGACCATCTACATCGCCGTCTACCTCGTCTACGCCCCCAAGAAGGCCAAGATGTTCACCGCCAAGCTCCTCCTCCTCGTCAACGTCGGCGTCTTCGGCCTCATCCTCCTCCTCACCCTCCTCCTCTCCGCCGGCGACCGCCGCATCGTGGTTCTTGGTTGGGTCTGCGTTGGCTTCTCCGTCAGCGTCTTCGTCGCCCCCCTTAGCATCATCAGGCTGGTGGTGCGCACCAAGAGCGTGGAGTTCATGCCGTTCTCGCTCTCCTTCTCCCTCACCATCAGCGCCGTCGTCTGGTTCCTCTACGGCCTCCTCATCAAGGACAAATATGTCGCTCTTCCCAACGTGCTGGGCTTCTCCTTCGGCGTCATCCAGATGGGGCTGTACGCCATGTACAGGAACTCGACGCCCAAGGCCGTGCTGACCAAGGAGGTCGAGGCGGCGACGGCCACCGGCGACGACGACCACTCCGCCGCCGGCGTCAAGGAGCACGTCGTCAACATCGCCAAGCTCTCTGCCGCCGTCGACGTCGTCAAGACCCGCGAGGTGCACCCCGTCGACGTCGAGTCCCCGCCGGCAGAGGCGCCGCCGCAGGAGGACGACAAGGCCGCCGCCGCCACCGCCGCCGCCGTCGCCGGCGCCGGCGAGAAGAAGGTAGCTGCATGA</cdnaseq>

Protein Sequence

<aaseq>MAGMSLQHPWAFAFGLLGNIISFMTYLAPLPTFYRIYKSKSTQGFQSVPYVVALFSAMLWIYYALLKSDECLLITINSAGCVIETIYIAVYLVYAPKKAKMFTAKLLLLVNVGVFGLILLLTLLLSAGDRRIVVLGWVCVGFSVSVFVAPLSIIRLVVRTKSVEFMPFSLSFSLTISAVVWFLYGLLIKDKYVALPNVLGFSFGVIQMGLYAMYRNSTPKAVLTKEVEAATATGDDDHSAAGVKEHVVNIAKLSAAVDVVKTREVHPVDVESPPAEAPPQEDDKAAAATAAAVAGAGEKKVAA</aaseq>

Gene Sequence

<dnaseqindica>1..52#780..816#1113..1485#1585..1704#1857..2151#2167..2201#ATGGCTGGCATGTCTCTTCAGCATCCCTGGGCCTTCGCCTTTGGTCTCCTAGGTGTGTTGCCTTTGATCTGATCCAAGGAATTCTCTTGAGAATTAATCTTGCATGGTTATTTACTTTTGTTGTTATTATTCTCTACATTTTTAATCATGTACTTTTCCATGTTCCACTTTTGTTGCCAAAGCTACTATATTTTTCCTACCAATTCATCCAAAACTACTATATTATAGCAAGGCAGCTAGTGGATCGACTTTGCACTTTTGGATGCAATTGTGAGTGGTTTACATTAGAGGGGCCATGCATAGCCAAATAAATTGTTTGGCAAAATATGATTTCCCTTGTAGTTAGCACAATATTGTGATCTTTCATTCCTTTACTCTTTTTGTTCCACCACCCTCATTATTGCAAGCCCCCTCTTTTAGAACCAACTAAAGATAAGAAACATTTGATTCATCATTAGAGGAGATTNAGATATACATACATACTACACATGCTTGCTGTGATAAGCCTAGCCAGGCACAGAAAGAGCCAAGACAAAAGGAGCTCAAAAGAAAAGGGGCTCCAATATCTTGCCCTGATCAGTGTAACATGACGTCACCCACACAATTATTAAAAGGATAGATGCATATGTGTTCGTTACGTATCTCCTTGTGTCACGTTGCTGTGCATGGTTCACTCGCTTAATTATAACGTCCGTCGCATTTTATGCATGCACTTCGTTATTAGTTAATCAAATTAAACAAGATCCTAACATATGATTTCTATTTTATTCTCTTTGCAGGCAACATCATCTCCTTCATGACCTACCTGGCCCCACTGTAAGTCCCACACATCCGGATATTTTCTTTTCTTTAGCGAAATTTTACATTGCTCCAGAAAGTACCTTTTACACTAAAAATTCTTATACACCACCATAAAATCAATGTGGTACTATTGGTACCTTATCAAAAATGATAAAATTACCTTTTTCTTCAGATAAAAACACTCCCCGTCTCTGTATAACTAAGATGTAGACAACCAATACACATGTCTAGAGCTAATCCTATCAATTAACATTGCTAGTAAATACAAGGAAAAATATAAAGAATTAACCAATTGCTTGGATGTCTTGCAGGCCGACGTTCTACAGGATCTACAAGAGCAAGTCGACGCAGGGGTTCCAGTCGGTACCCTACGTGGTGGCGCTGTTCAGCGCGATGCTGTGGATCTACTACGCGCTGCTCAAGTCCGACGAGTGCCTCCTCATCACCATCAACTCCGCTGGCTGCGTCATCGAGACCATCTACATCGCCGTCTACCTCGTCTACGCCCCCAAGAAGGCCAAGATGTTCACCGCCAAGCTCCTCCTCCTCGTCAACGTCGGCGTCTTCGGCCTCATCCTCCTCCTCACCCTCCTCCTCTCCGCCGGCGACCGCCGCATCGTGGTTCTTGGTTGGGTCTGCGTTGGCTTCTCCGTCAGCGTCTTCGTCGCCCCCCTTAGCATCATCGTAAGAAACCCTAGAATTGCCTGTAAACAATAATAACTTTCGGTCTCTGCACCAACTAAGGATGCACATATTTACTCACCGCTTTTGCTATCTCTGCAGAGGCTGGTGGTGCGCACCAAGAGCGTGGAGTTCATGCCGTTCTCGCTCTCCTTCTCCCTCACCATCAGCGCCGTCGTCTGGTTCCTCTACGGCCTCCTCATCAAGGACAAATATGTCGCTGTGAGTAGCTCCGATTCGACCCGCTCTTCTTCCTAAATTTTCCGCTGCTCGATTTAATTTCTATTTCTAATTGTGGAAGATTGTTTAATTATAGTGATTATGGCTAGCTGATAACCGATTTTAATTTCTGATGGTGATCCAAAATGGAACAGCTTCCCAACGTGCTGGGCTTCTCCTTCGGCGTCATCCAGATGGGGCTGTACGCCATGTACAGGAACTCGACGCCCAAGGCCGTGCTGACCAAGGAGGTCGAGGCGGCGACGGCCACCGGCGACGACGACCACTCCGCCGCCGGCGTCAAGGAGCACGTCGTCAACATCGCCAAGCTCTCTGCCGCCGTCGACGTCGTCAAGACCCGCGAGGTGCACCCCGTCGACGTCGAGTCCCCGCCGGCAGAGGCGCCGCCGCAGGAGGACGACAAGGCCGCCGCCGCCACCGCCGCCGCCGCCACCGCCGCCGCCGTCGCCGGCGCCGGCGAGAAGAAGGTAGCTGCATGA</dnaseqindica>

External Link(s)

EnsemblPlants:BGIOSGA033930