Os11g0195100

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Revision as of 09:03, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os11g0195100| Description = SecA protein family protein| Version = NM_001073955.1 GI:115484558 GeneID:4349987| Length = 9061 bp| Definition = O...")
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Gene Name

Os11g0195100

Description

SecA protein family protein

Version

NM_001073955.1 GI:115484558 GeneID:4349987

Length

9061 bp

Definition

Oryza sativa Japonica Group Os11g0195100, complete gene.

Source

Oryza sativa Japonica Group 

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 11

Location

Chromosome 11:4745232..4754292

Sequence Coding Region

4745232..4745625,4745741..4745805,4745925..4746045,4746498..4746589,4746752..4746817
,4747008..4747027,4747049..4747141,4747260..4747347,4747472..4747537
,4747630..4747745,4748312..4748402,4749035..4749136,4749244..4749327
,4749453..4749545,4749630..4749725,4749816..4749901,4750430..4750508
,4750577..4750690,4750792..4750887,4750962..4751025,4751123..4751412
,4751803..4751858,4751962..4752079,4752189..4752269,4752585..4752664
,4752903..4752957,4753044..4753113,4753181..4753370,4753469..4753592
,4753957..4754031,4754119..4754292

Expression

GEO Profiles:Os11g0195100

Genome Context

<gbrowseImage1> name=NC_008404:4745232..4754292 source=RiceChromosome11 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008404:4745232..4754292 source=RiceChromosome11 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcgttcgccggcgccaccgccgccgccgcctctctctcctcctccgccccttccatcctcctcgtctccgccgtcactcccccgccccgcctcctccccacaagctccatactctcgccggtatacagcgccaggcccaagcggcctcctactctctcctgcaacgccgccgccgccaccgtcgcggccgccgctgcggggaagcccgggtcgtggagggacctatgtagcctcaacgcctgggtggtgcgggactaccgtcgcctcgtggacgccgtgggggcgctcgagccgcggctccgggggctcaccgacgagcggctcagggcgaagacggacgagttccgcgcccgcctcgcccgtggggagacgctcgccgacgtccaagcagaggcgtttgccgtggtgagggaggcggcgaggaggacgctggggatgcgccacttcgatgtccagataataggtggtgctgtactgcatgatgggtgcatcgcggagatgaagactggcgaggggaagacgcttgtgtctaccttggcggcttatctcaatgcgctcacaagcgaaggcgttcatgttgtgactgtaaatgattatttggcacagcgagatgctgaatggatgggtcgtgtgcatcgttttcttggtctttccgtgggtctaattcaggctggtatgaaggctgacgagagaagagccaactataggtgtgacattacatacactaacaactcgtacttttatggtattatttggttctcaaagattactcataacttacaggagcttggatttgactatcttcgtgataacttatcacggaacaaagaacagctagttatgagatggccgacaccattccattttgcaattgtggatgaagtggactcagtgcttattgatgagggaagaaacccattgttaataagtggagaggataatagagatgcggcacggtatccagtagctgctaaagctgcagaccttcttatggagggttttcattacactgttgaactaaagagcaataatatagatctcacagaggatggagttacttgtgctgagatgattcttgagacaaatgatctatgggatgagaacgatccatgggcaagatttgtgatgaatgcattgaaggccaaagagttttaccgcagggatgtccaatatattgtgagggatggaaaagctctcataattaatgagatcataatgtggaacctttccttcaaggttgtcatgcccatcctacagtactgcattgttccaattaatggcattagtatcattattcttactctttttgagctaactggccgagttgaaccaaaaagaaggtggtctgatggtattcatcaagcagtagaagcaaaagaaggcctcaaaattcaggcagattcagtaatcgtggctcagattacatatcaatcgttatttaagctttatcctaaactttctgggatgacagggacagctaaaacagaggaaaaggaatttctgaagatgtttaagacgccagttattgaagtgcccacaaatctgccaaatatacgggtggacttgcctatccaagcttttgcaactgcaagaggtaaatggcaatatgtgcgggcagaggtagagtccatgtttcatttgggtcgtccagttttagttggcactacaagtgttgagagttcagagtacttgtcagatcttcttaaagctcgcaatattcctcacaatgtccttaatgcaaggccaaagtatgccgcaagagaagctgaaattgttgcacaagccggaaggaaacatgctattacaatttcaactaacatggctggcagaggaacagatattattttaggtggtaaccctaagatgcttgcaaaagaaattatagaagataatgtgcttccatttcttacccatgaacccccagatgttgaaaccgtaggcgaatccacatcccacaagggtctctccaaaattaaacttgggccatcatcgctaggcctgcttgctaaagctgcaatcatagcgaaatatgttcagagaagcgaaagaaatgaatggccttttcagaaggcaaaatctactattgctgagtctgtagaaatgagtcatactattgggatggagaaactgcaagatcgcttggctgaagagtctgagatgtatcctctttgtgatacaataggacttgcttatcttactgtattgagggattgtgaaattcattgttctactgaaggtgctgaggtgaaggcattagggggtctccatgtaataggaacttctttgcatgagtcacgccgaatagataaccaattacgtggcagagctggcagacaaggtgatcctgggtcaacaaggtttatggttagcttacaagatgaaatgttccggaaattcaatttggacactgaatgggctgtgagacttatatcaaggataacaaatgatgaagacatagctattgagagcaatgctgttgtaaaacagcttctaggtcttcaaatcaatgcagaaaagtattattttggtattaggaaaagtcttgttgagtttgatgaagtcttggaggtacaaagaaagcatgtttataaccttagacaggttatattatcaggtgactctgaaagctgcagtgagcaaatctttcagtacatgcaagctgtagctgatgatattatcttgggaaatgctgatccccagaagcctcctaacacgtggaagttggcaaaccttttggacgagtttggcagtctaggtggaacgttacttgatgaaccattcaaggaaattcaagaggaagacttgctatcatcacttgagcaaattcatgaatatggccctgtgaatgttgataattttactcttccaaatatgccagtatcacctaattcattcagaggaatctggaagagaacatcttcaatgatgcggtggcttgccatatgtgttgatgatgcatcgaagaaaggaagatacacgtacattgtcaatatgcttcgcaaatattttggggattttctaatagctacatacttggatgctgtgcaagagtcccgttatgatgatgcatacattcgaggaattgagagggaaatactactgaagactcttgatactctgtggaaggaccatttggtgaacatgaacaagcttagttctgcggtgaatgtgcggagctttggacatagaaaccctttagaagaatacaagattgatggttgtcggttcttcatctcgatgttgggtgccacacggagattgacagtggaatcactactccattactggtcatctccaatggagtctgaggaaatcttcaatacaggtgataaatag</cdnaseq>

Protein Sequence

<aaseq>MAFAGATAAAASLSSSAPSILLVSAVTPPPRLLPTSSILSPVYS ARPKRPPTLSCNAAAATVAAAAAGKPGSWRDLCSLNAWVVRDYRRLVDAVGALEPRLR GLTDERLRAKTDEFRARLARGETLADVQAEAFAVVREAARRTLGMRHFDVQIIGGAVL HDGCIAEMKTGEGKTLVSTLAAYLNALTSEGVHVVTVNDYLAQRDAEWMGRVHRFLGL SVGLIQAGMKADERRANYRCDITYTNNSYFYGIIWFSKITHNLQELGFDYLRDNLSRN KEQLVMRWPTPFHFAIVDEVDSVLIDEGRNPLLISGEDNRDAARYPVAAKAADLLMEG FHYTVELKSNNIDLTEDGVTCAEMILETNDLWDENDPWARFVMNALKAKEFYRRDVQY IVRDGKALIINEIIMWNLSFKVVMPILQYCIVPINGISIIILTLFELTGRVEPKRRWS DGIHQAVEAKEGLKIQADSVIVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFKTP VIEVPTNLPNIRVDLPIQAFATARGKWQYVRAEVESMFHLGRPVLVGTTSVESSEYLS DLLKARNIPHNVLNARPKYAAREAEIVAQAGRKHAITISTNMAGRGTDIILGGNPKML AKEIIEDNVLPFLTHEPPDVETVGESTSHKGLSKIKLGPSSLGLLAKAAIIAKYVQRS ERNEWPFQKAKSTIAESVEMSHTIGMEKLQDRLAEESEMYPLCDTIGLAYLTVLRDCE IHCSTEGAEVKALGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFR KFNLDTEWAVRLISRITNDEDIAIESNAVVKQLLGLQINAEKYYFGIRKSLVEFDEVL EVQRKHVYNLRQVILSGDSESCSEQIFQYMQAVADDIILGNADPQKPPNTWKLANLLD EFGSLGGTLLDEPFKEIQEEDLLSSLEQIHEYGPVNVDNFTLPNMPVSPNSFRGIWKR TSSMMRWLAICVDDASKKGRYTYIVNMLRKYFGDFLIATYLDAVQESRYDDAYIRGIE REILLKTLDTLWKDHLVNMNKLSSAVNVRSFGHRNPLEEYKIDGCRFFISMLGATRRL TVESLLHYWSSPMESEEIFNTGDK</aaseq>

Gene Sequence

<dnaseqindica>1..394#510..574#694..814#1267..1358#1521..1586#1777..1796#1818..1910#2029..2116#2241..2306#2399..2514#3081..3171#3804..3905#4013..4096#4222..4314#4399..4494#4585..4670#5199..5277#5346..5459#5561..5656#5731..5794#5892..6181#6572..6627#6731..6848#6958..7038#7354..7433#7672..7726#7813..7882#7950..8139#8238..8361#8726..8800#8888..9061#atggcgttcgccggcgccaccgccgccgccgcctctctctcctcctccgccccttccatcctcctcgtctccgccgtcactcccccgccccgcctcctccccacaagctccatactctcgccggtatacagcgccaggcccaagcggcctcctactctctcctgcaacgccgccgccgccaccgtcgcggccgccgctgcggggaagcccgggtcgtggagggacctatgtagcctcaacgcctgggtggtgcgggactaccgtcgcctcgtggacgccgtgggggcgctcgagccgcggctccgggggctcaccgacgagcggctcagggcgaagacggacgagttccgcgcccgcctcgcccgtggggagacgctcgccgacgtccaagcaggtactcaacccgccgccgcccgcccgcccgcccagtgctgaaactgctgcattctggcgtttttgtttggtccccatctgattgcgtcggtgcgttgcttgcttctgctgtccagaggcgtttgccgtggtgagggaggcggcgaggaggacgctggggatgcgccacttcgatgtccaggtatcctgacctcagcttggtcagttttatgttcagtaattggttggggatgattgagcatttgagctggtgttgattgtgggagtgattcagctgtgtttccttgatgtttgtgttagataataggtggtgctgtactgcatgatgggtgcatcgcggagatgaagactggcgaggggaagacgcttgtgtctaccttggcggcttatctcaatgcgctcacaagcgaaggcgttcatggtactatctgagttgatatcgtattttgttgatcatctgtctactttaagttgttctgtggaatctgttgcgccatgtgcaattaggcatttaggcttagtgtatgactgcacattttgtatttgtagctgtcacattccatacattgactactgtctgctgcttcttcacaatgtgttaaagagttaagacatttagtggatcacatctttaccttgtcattacctttagataactacgcacaaaagacgtgctagtcatttatgtaatcactgttagtatgaaatatatgcttcttggtcatgtttaaagatccgaacaaagacaattatctaaggtcgattttctttgtcgcgtatgcattgatctgtcgcacttagaacatttcatattaagctctatttatcttttcctttcattcagattttataagcactgtgatcctttttcagttgtgactgtaaatgattatttggcacagcgagatgctgaatggatgggtcgtgtgcatcgttttcttggtctttccgtgggtctaattcaggtattgacattatggtgaacaatgcttttgttgtactttctacaccttcctcttgctggcattgaaatacctggtagtgttactttattttgtagaaatcattggaggcaaacatataacattataactttgtgtcactctgtttttttacatatcctcaaggctggtatgaaggctgacgagagaagagccaactataggtgtgacattacatacactaacaactcggtaagatgtccaatagaggatcaacatttaaatagtcttatcacgtggttatctagatttaggggacaatctttttctccgtggtatctttgtgtatttcttcaagttgactttgacactttgattagatgctaattgtgaccagcacatacaaatacttgtatatgtgaccttttaccttcttatttagtacttttatggtattatttggtgagttctccatacatctaggttctcaaagattactcataacttacaggagcttggatttgactatcttcgtgataacttatcacggaacaaagaacagctagttatgagatggtacattttatactttcacttttacattgcagaactttgttcttcatgtttccttttgattcgaagggaacacattaggagaaaatttcactattaaaattaacacatgatttaacaggccgacaccattccattttgcaattgtggatgaagtggactcagtgcttattgatgagggaagaaacccattgttaataagtggagaggtttattgctaattctttctctaggcttattcttttagacatttgttgtttctcaactggtcaaaatgtaatatatttaccaaacttattgtaagacatttgctaattcctgccctgttattaggataatagagatgcggcacggtatccagtagctgctaaagctgcagaccttcttatggagggttttgtgagtattgttcttgtatgccaaacctaagtattacaaggggtcatggttttctagtaattgctaaactgttgtattaatttattctgcagcattacactgttgaactaaagagcaataatatagatctcacagaggatggagttacttgtgctgagatgattcttgagacaaatgatctatgggatgagaacgatccatgggcaaggtgcaatcactgtttatttctttatgtagtttttgtctgaatgtggttttcttgctttgtgcaagtgcaagtattgcaagacaactaatgaagtgcatttctttgtacttttgtggaatgcattaaaattgatgagccctaaccaagcaaggcagaaatgtcattgttcttccatggcaaccttgagttgtttagaatggattggtagagctaaagaatgtgaactatacacacagtaccctttgatgaaatgaaagaaagggctccgtgtatagcgagcgcctcgccgtttaaaagggaaccatagaaacgatgaacccactattttttagtatagttagaattttttatttctatgcgaaataactgaagggagtagaagagaattgtggttggaaaataataattttatgctgatgcacatcttttatcacctccacatccaaaaaactgctgaacctatagagttaatgaatgctgctacatgataggtacaaccaatataatagcaacttgtgcatgcattaactagtgattttaaccataaacttgtcacaatgctacagatttgtgatgaatgcattgaaggccaaagagttttaccgcagggatgtccaatatattgtgagggatggaaaagctctcataattaatgaggtaatatctctgtttcggtattgttgacaaggattctgttagtttcatacttaccataaatccataatacagagacaaagctgtctgttgcgcaaaatattggataagagcataacattctctttcaaagaaccaactcggcagatgttaatttcaaaacaaggttgcttctctaaaggatatgttcacagcaaggcttttttggtggataggaagcagaaatctatcattgttacactgtatcatcctaatatcatgtaaaattagattgcaggagtcccaaacaattgtcaatgtgttaggtacaaatatacaatgctttcagttgtattgttgtaaatctggtagaacgttcgagaataacatagctctgttagctcaaaccttcattgtatccaggatgtgctattcctttgtgacactttccatttcttcaatcttggggtacatctcctctggtaatggtagcagtacaacacccatctaacaaccactgaacagatcccattacaatacaccaatgcaattctaatgctgacgtgccttgataggctttgcaaagtaatctactttatcatgggatgactaagacttccaattgttgatttggaacttcatttcatgctttatagatcataatgtggaacctttccttcaaggttgtcatgcccatcctacagtactgcattgttccaattaatggcattagtatcattattcttactctttttgaggttatgttctatatatcctcttgatcttaaatttgcctatgggtccgttaccattacatattttgggaagcctatgatctgggacaataatgctaatgcttttccagctaactggccgagttgaaccaaaaagaaggtggtctgatggtattcatcaagcagtagaagcaaaagaaggcctcaaaattcaggtcagtattgacttatgcatagccggtttatacaaatggatctagtatcagattacaccgattagtttcctttttttttaatttatgacaatttctgtgaccaatgctaattgcaatttcattaggcagattcagtaatcgtggctcagattacatatcaatcgttatttaagctttatcctaaactttctgggatgacagggacagctaaaacagaggtacagatatctatttaactattttctgggttattttttactttttataatttgtgctcaaatggcatgatgatgattttacaggaaaaggaatttctgaagatgtttaagacgccagttattgaagtgcccacaaatctgccaaatatacgggtggacttgcctatccaagcttttgcagtaaggattgtgatgattagttcataaaataatatgcagtttctctctttggtgacaaaaaaaaatgatctatatcattactctttgtagactgcaagaggtaaatggcaatatgtgcgggcagaggtagagtccatgtttcatttgggtcgtccagttttagttggcactacaaggtgaacttccttatagcaaatccattttgttgcaatccaaaacaatatgttcacgactgcttgaaataacatcaaatgtactttatgaactatgactattagattccatcacctgaattttgaagtgtgcaatattttgattttatacttttttcgtagagtgatagttgcttctgttcatctgttgtaacttgtttctatggttgttgggattatgaatatataattgtgtagcaaacaattttcaccacatcatcttatctcttagggggttatgagttgatgggtgggatgcaggagtgcagatcccatgtttgctttagagagattctgccaattcaacacaatcctgattagctactcttgtatgataggaatacagttaaaagaattctaagtagttagcctagccctggcagagagcaaattttgtgaggatgtaactgtatgctcccgtatatgttagtttgtgcttgtttatttgtctgttttcttgtttgaagctaatggtgtatatacctgttacagtgttgagagttcagagtacttgtcagatcttcttaaagctcgcaatattcctcacaatgtccttaatgcaaggccaaaggtttgatatcttgcttttagttcaacttattcctcctcgtttatagctaattgcatcattctcaacagtatgccgcaagagaagctgaaattgttgcacaagccggaaggaaacatgctattacaatttcaactaacatggctggcagaggaacagatattattttaggtggtaaccctaaggttagttatccatacttttagtctcttaccattgcattttcttatatccgaaaaccactaacaacattatcttcatggtctgatttttttccctttactagatgcttgcaaaagaaattatagaagataatgtgcttccatttcttacccatgaacccccagatgttgaaaccgtaggcgaatccacatcccacaaggtggttcattttagagccttctccgcctaaaaacctcacaggtgtttcacactgtttccctttattttctgtagggtctctccaaaattaaacttgggccatcatcgctaggcctgcttgctaaagctgcaatcataggtatgtattgaagtatcaatgacagtacattatagaacttctagaaagcttttatttatttatttttgtttggctcaccctttcttgttacttgtagcgaaatatgttcagagaagcgaaagaaatgaatggccttttcagaaggcaaaatctactattgctgagtctgtagaaatgagtcatactattgggatggagaaactgcaagatcgcttggctgaagagtctgagatgtatcctctttgtgatacaataggacttgcttatcttactgtattgagggattgtgaaattcattgttctactgaaggtgctgaggtgaaggcattagggggtctccatgtaataggaacttctttgcatgagtcacgccgaatagataaccaagtaaggggatactttctacctgcgatgctgcttaggtttttgtatcacatgaaaccctacgggtcaggtgatttgatgtttgagatcaaataattttaaatttagtaaattagtactgaactgcaaatatgacatgttgagatcagatactgcttctctcttcattttctttttatatataaatacagtcggtgattttgtgttcatgttttgctattgtctcccctttgactagtctgtagtgctctgcagatgtgtcacatgcaaaatttgttcttctgatacaatctttgacttctaaagcttgtggagttactgaatatggccctgagttatgaaatgttttgctgctacagtgtcattaaatctgtatgtttttttcccctgtagttacgtggcagagctggcagacaaggtgatcctgggtcaacaaggtttatggttaggtatgtctcttcccaaacataagcatttatctctataaattttggcatacactctgatcttatctattcacttgaaactaactgcccctaattggtcaaccagcttacaagatgaaatgttccggaaattcaatttggacactgaatgggctgtgagacttatatcaaggataacaaatgatgaagacatagctattgagagcaatgctgttgtaaaacaggtcatactgcctttttctagccatgctgaacgttagcaattcagtgtttcttttgttttgatatgacagtgttttgtcttgtttacatgcattgccttttcaaatgcagcttctaggtcttcaaatcaatgcagaaaagtattattttggtattaggaaaagtcttgttgagtttgatgaagtcttggaggtatattattattcccagttaacatacttatccctacttctatacccaatttgagtatttgaactctgatttattttactggtagccacacactactgttaatgtgcatgcccctcttgagtgttgattcatatcaactgtgctgtgtgctactttctaatccggaattctataccaaatggttttgctttcattgtgcttattactggggccttaattccccaattgacataacttggctaagttcttagccaaattttgtattttttcttccttgcatacttattaacagggcactgtttatattattgataggtacaaagaaagcatgtttataaccttagacaggttatattatcaggtgactctgaaagctgcagtgagcaaatctttcagtaagtttaccttctcttattaaattcaaaatgtagctaataaaatggttaaccaagagctagacacattcagacatattctaacatagtcattctcttggatcaaaactgcagaatagataatatatttttaagggtatagatggatagagataatctatttaaagggtttagcctgataggtttcagaagcacgttactgactgggatatcattgtgtcccttgaaatacttataggtacatgcaagctgtagctgatgatattatcttgggaaatgctgatccccagaaggtacttcagcagatctgattcttaagttcctttctaggatgcatatttttgttctatatcagttgctcaccttaccttttcttcagcctcctaacacgtggaagttggcaaaccttttggacgagtttggcagtctaggtggaacgttacttgatggtaatagacatgatatttagcccctgctaatatttagtagatatcctgaccttgagatgctttgcagaaccattcaaggaaattcaagaggaagacttgctatcatcacttgagcaaattcatgaatatggccctgtgaatgttgataattttactcttccaaatatgccagtatcacctaattcattcagaggaatctggaagagaacatcttcaatgatgcggtggcttgccatatgtgttgatgatgcatcgaagtgagttgtgacaccatttatgcttttgcttgaagtgtggttttacatccatctacagttaccaatagtttttctgtactccgtgacaaacaatccaggaaaggaagatacacgtacattgtcaatatgcttcgcaaatattttggggattttctaatagctacatacttggatgctgtgcaagagtcccgttatgatgatgcatacattcgaggaattgaggtttgcttctatcactaatttgtttatgcagttttgttggagataaaacccaactaaacctgtgtattctgtggaggtctatattgggcacttcgcaatcaacgaatcattctgggcgtaatgttattctatgttcatttttaagtcctgaacaatctatgtattgcagattattagttctacaagcaaatatgtgattaaaatgaaaaaaaaaccctcaacttatgggctaatgtgatcatgccaactatagggaattacggtgtttattgacaaatgctatgccttgttgatatgactgtactctttttctgtaatcaaagcatatttgttgcccactatcttcattttccttgaattgcagagggaaatactactgaagactcttgatactctgtggaaggaccatttggtgaacatgaacaagcttagttctgcggtagttccaatatgttcctttaaatcttctgatttactcttctcctgtcacagctttctggtgttgattttgattttctttttctaggtgaatgtgcggagctttggacatagaaaccctttagaagaatacaagattgatggttgtcggttcttcatctcgatgttgggtgccacacggagattgacagtggaatcactactccattactggtcatctccaatggagtctgaggaaatcttcaatacaggtgataaatag</dnaseqindica>

External Link(s)

NCBI Gene:Os11g0195100, RefSeq:Os11g0195100

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