Os11g0209200

From RiceWiki
Revision as of 09:04, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os11g0209200| Description = Similar to Ribosomal RNA apurinic site specific lyase| Version = NM_001074009.1 GI:115484666 GeneID:4350046| Length ...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os11g0209200

Description

Similar to Ribosomal RNA apurinic site specific lyase

Version

NM_001074009.1 GI:115484666 GeneID:4350046

Length

2937 bp

Definition

Oryza sativa Japonica Group Os11g0209200, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 11

Location

Chromosome 11:5598388..5601324

Sequence Coding Region

5598681..5598703,5599428..5599617,5599698..5599853,5600042..5601097

Expression

GEO Profiles:Os11g0209200

Genome Context

<gbrowseImage1> name=NC_008404:5598388..5601324 source=RiceChromosome11 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008404:5598388..5601324 source=RiceChromosome11 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgcctcctaggcgaaggggctcgagaggcgaggagatggcggaggccagcaaggagggcgggatcaacgccctccccgacgagctcctccagcacgtcctgtccttgctgtcagccgatgaggccgtcaagacctgcgtcctgtcccggcgatggcgccacctctggagatccacggacgtcctgcgccttgatgctgataaggagagatggaagagctccaagcggttcaagaagtttgtcaaccatctagtgctcttccggggctgctcgcctctacgcgagtttgatttggaattcagttcatgtcgagagaaggatgaaaagggtgaagacagtgacgaggatgaatcagacgatgacagaggtgaggatgaatcagatgaagacagtgatggcgatgaatcagatgaacacagtgacgacggtgaatcagatgacgacagtgacgaggacgaagacagtaatccattccaatgtgtcatgatgtgggtcatgtatgctctaatatgccaagttcaggtgctcaaaatccacaacttcaatgaaagatacattgaaatagatggcggcatgcctctcgtctcacagcacttgactaagatagaactttctggtatagtgttaaaggattgttttcttaacttctcaagctgtcccgcattgaaagagctatatttcaccaagaattgctgctttgactctgtcaagaagatcttctcccagtcaatgcaatgccttcggatcttctgttgtcaattcagtgaatatcaccgcacactcatttatgcaccaagcctcattaggctctttcttgaaggtttttggggcagaactccttttctggaaagaatgccctcattagttgaagcatctgtcagaccccaccaggattgtgatgactggtgtagtaatacttacactggtaattgtgaagatgaagactgtgatggttgtcatggtatgatagataagatcggcaacagttccaattgtgtgctccttggaggtctatcagaagctaagagtttgaagttgatagctggacctgaaataattatttttggaagtgatttgagatggtgccctatgtttagcaagctgaagaatttgttactcaatgagtggtgtcttctgtctaatttctgggcactagcctgtattcttgaacactcaccagttctacggaagctcactcttcaaatttccaaggaagctaaatctatgatgcaaacagaagagaatgacaatccattgcggaaaccagctgcaatatctgaacaccttaaggtagtgaaagtccactgtaaagaagttgatgaggtggtttacaaaattgggaagtggttgagtacattggacataaaagttcttatcaaacggaggaatcaatcaccaaaacgtttctgttcaagtaaggtctaa</cdnaseq>

Protein Sequence

<aaseq>MPPRRRGSRGEEMAEASKEGGINALPDELLQHVLSLLSADEAVK TCVLSRRWRHLWRSTDVLRLDADKERWKSSKRFKKFVNHLVLFRGCSPLREFDLEFSS CREKDEKGEDSDEDESDDDRGEDESDEDSDGDESDEHSDDGESDDDSDEDEDSNPFQC VMMWVMYALICQVQVLKIHNFNERYIEIDGGMPLVSQHLTKIELSGIVLKDCFLNFSS CPALKELYFTKNCCFDSVKKIFSQSMQCLRIFCCQFSEYHRTLIYAPSLIRLFLEGFW GRTPFLERMPSLVEASVRPHQDCDDWCSNTYTGNCEDEDCDGCHGMIDKIGNSSNCVL LGGLSEAKSLKLIAGPEIIIFGSDLRWCPMFSKLKNLLLNEWCLLSNFWALACILEHS PVLRKLTLQISKEAKSMMQTEENDNPLRKPAAISEHLKVVKVHCKEVDEVVYKIGKWL STLDIKVLIKRRNQSPKRFCSSKV</aaseq>

Gene Sequence

<dnaseqindica>2622..2644#1708..1897#1472..1627#228..1283#accccgactccccgaagcactaggccctagaagcggggggcacgcggcgccagagccaccgactccgccggcggcggccggatccggcgagcttgcggcgccaggctagggctcctcctcgccgtcgtcgtcgaccggcggctaatccaccagcgcctgggtgatcggtgagtcggctcttcgtttcttgccgcgcggtgcccttcgcccgccacctgttcgacggaatgcctcctaggcgaaggggctcgagaggcgaggagatggcggaggccagcaaggagggcgggatcaacgccctccccgacgagctcctccagcacgtcctgtccttgctgtcagccgatgaggccgtcaagacctgcgtcctgtcccggcgatggcgccacctctggagatccacggacgtcctgcgccttgatgctgataaggagagatggaagagctccaagcggttcaagaagtttgtcaaccatctagtgctcttccggggctgctcgcctctacgcgagtttgatttggaattcagttcatgtcgagagaaggatgaaaagggtgaagacagtgacgaggatgaatcagacgatgacagaggtgaggatgaatcagatgaagacagtgatggcgatgaatcagatgaacacagtgacgacggtgaatcagatgacgacagtgacgaggacgaagacagtaatccattccaatgtgtcatgatgtgggtcatgtatgctctaatatgccaagttcaggtgctcaaaatccacaacttcaatgaaagatacattgaaatagatggcggcatgcctctcgtctcacagcacttgactaagatagaactttctggtatagtgttaaaggattgttttcttaacttctcaagctgtcccgcattgaaagagctatatttcaccaagaattgctgctttgactctgtcaagaagatcttctcccagtcaatgcaatgccttcggatcttctgttgtcaattcagtgaatatcaccgcacactcatttatgcaccaagcctcattaggctctttcttgaaggtttttggggcagaactccttttctggaaagaatgccctcattagttgaagcatctgtcagaccccaccaggattgtgatgactggtgtagtaatacttacactggtaattgtgaagatgaagactgtgatggttgtcatggtatgatagataagatcggcaacagttccaattgtgtgctccttggaggtctatcagaagctaagagtttgaagttgatagctggacctgaaatagtaagcttacattgacatcttatctcctttatgttaattgctgtaacttacctttgttgcctacttgccttacctatatgcaccattttgtcaccttaacaaaattcatgcattgctactgtcttggctcttaaattattgtattcacaacaaaaattggttgactttgtcgcttgcactttatccagattatttttggaagtgatttgagatggtgccctatgtttagcaagctgaagaatttgttactcaatgagtggtgtcttctgtctaatttctgggcactagcctgtattcttgaacactcaccagttctacggaagctcactcttcaaatttccaaggtatttgtttttacaactgctgcactgttaaagttgttgtgcatgattaattaaatgtgatatttattttcgtgctacaggaagctaaatctatgatgcaaacagaagagaatgacaatccattgcggaaaccagctgcaatatctgaacaccttaaggtagtgaaagtccactgtaaagaagttgatgaggtggtttacaaaattgggaagtggttgagtacattggacataaaagttcttatcaaacggaggaatcaatcaccaaaacgtaagcttgctattgacatttttcattcttccactttttctgaaatttgcattatttatttgttaatgaaagaaataaattactaaaaatgcaaatacagatttaacaaaagaaaaggaaaagtaaaaaaaaagaatgaaaaaaactatctagaagggataaaaaggaaacatcatccagtatattttgttgtcaagtatgatccatgaaattgtacagagttttccctgttgcactgagtaataatataaatagacacaaagtatgttggcttctacaatttgaactgtttacttgttgaatagctttcatttcctgttaatgttgttaacattcattctgattgagtagttctggacagcaacacaatatgttgacttgtcgaatagctcttaaatatacatgttttctgacatcatatggctattatttaccttcatctttgaaatttaccttcgagaggtcattgagtgttgcagacattgttgactgaatcacccatctgtgccctgtaaacttattttgcataaatatgctagtttatggagcactttgccttagaaactagggttatatgaaacaaattgctaaacctcagactctttgaaattaactcgttttgtagtatgtcctgggatttcaagtttcttgtcaagtaactgaacattttaattgctgccgattattaccagactgtgaacttaccttgcatttttactgacaggtttctgttcaagtaaggtctaaaaactggattgtccatggatctacaggtctaaaatggtttcaccgcgttggtgcttactgcttaatttgctgtgacaactgagaaggttgccattttctgtctgtaggtgtcatatgtcagttccagtcatattgacagttggaaatataagtcagaatttgtaattgtagggccctaaaaaaaaggatttggaagtgcaggtaatctatgggtttctggtttgataaatctgctacctttaacatgtctagctctgtgaacattgctccgtctgaaatgtttgatagtatgc</dnaseqindica>

External Link(s)

NCBI Gene:Os11g0209200, RefSeq:Os11g0209200