Os11g0229500

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Revision as of 09:05, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os11g0229500| Description = Similar to NBS-LRR protein (Fragment)| Version = NM_001074089.1 GI:115484826 GeneID:4350133| Length = 7943 bp| Defi...")
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Gene Name

Os11g0229500

Description

Similar to NBS-LRR protein (Fragment)

Version

NM_001074089.1 GI:115484826 GeneID:4350133

Length

7943 bp

Definition

Oryza sativa Japonica Group Os11g0229500, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 11

Location

Chromosome 11:6871293..6879235

Sequence Coding Region

6876234..6878939

Expression

GEO Profiles:Os11g0229500

Genome Context

<gbrowseImage1> name=NC_008404:6871293..6879235 source=RiceChromosome11 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008404:6871293..6879235 source=RiceChromosome11 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggaggctgtaatcctcgctgtctcaaagattggttctgttttagtggaggaagccaccaaagctgctataaccaagctatctgaaaaagctacaaatcttaaggaactgccatcaaaggttgaggaaatagaggatgaactgaagacgatgaacaatgttataaaacagatgagtacaacaaatcttacagacgaggttgtcaagggttggattgcagaggtgcgaggtctggcccaccgtgttcaggacataatggacaaatattcataccatgctcttaaattggaagaagaaaattctgtcaagaaactcttcaccacaccgaattatgtcacggttttcagtgaaattgctgaagagattagcaagatagagaaaaaaattgaaaatgttgcaatgcggaaaaaacggtggcagcagcagtctcaacacactcccaatccgcttgcagatattgaaaggaaacggtcccaagactgccttctagctccagatgatctagttgggatagaagacaacaggaaactgttgactgactggttgtactccaaagagcaagataacacaataataacagtatctggtatgggtggattggggaaaaccaccctggtcaataatgtatatgagcgggagaagaacaatttcgaagttagtacttggattgtcgtgtcacagtcatatgatgtcgttgatttgctgaggaaattgcttaggaagattgtgcctgatgatcaaacacagctattagatttggatgctcatgacttgaaaattagaataaaggaaaagcttaaggatgaaaattttctaattgtattggatgatgtctggaaccgagaagcatacactcaaatagcagatgcattcccaaacttccaagcaagtcgcataatcatcacaacacgacagggtgatgtagcaactcttgctcagtcagcacgccaactcaaactcaacccattggagcacactgacgcgcttgaactcttctgtagaagggctttctacagaaactgcaagtgtccacagaaccttgagaaactgactaatgatatagtagttaggtgccaaggtctgccactggcaatcgtatctataggtggcctattgtcttcattgccaccagagaatcaagtctggaatgaaacatacaagcaacttcgaagtgagctcacaaaaaacaataatgttcaagcaattctaaatatgagctatcatgacttaccgggagatcttagaaactgcttcttgtattgtagcctgttccccgaagatcatgaattatcacgtgagaccgttgtacggttgtgggtcgcagaagggtttgcagtacaaaatgaagaaaacacaccagaggaggtggctgaaaaatatcttcgtgaattgatacaaaggaatatgttggaagttcttggaaatgatgagctaggcagggttagtacctttaagatgcatgacctcgtgcgggacctggctctttctattgctaaagaggagaagttcggctctgcaaataattatgacactatggagaggatggataaggaagttcgtcgcttgtcatcatatggatggaagggcaaacctgtgttgcaagttaaattcatgcgtctccggaccctagtggcacttggaatgaaaacaccctctcgtcacatgttatcctcaattttgtctgaatccaactatcttactgttctcgagttgcaagattctgaaataactgaagtgccagcatccataggagagctatttaatctacgctacatcggcctgcagcgcactagagtcaaatcacttccagaatctattgggaagctctcaagcctcctgactctcaacatcaagcaaaccaaaatacaaaagctaccacaaagcattgttaagattaagaagctgaggcaccttctagctgacagatatgaagacgagaagcagtcagcgtttcgctatttcattggaatgcaagcacccaaagagctatccaacttggaagaactccagacccttgagactgtggaagccagcaaagaattggctgagcagttgatgaaacttatgcaactacggagcgtgtggattgacaacataagaactgatgattgtgcaaatctttttgctacactatcaaagatgccacttctttccagcttgcttctatctgcaagtcatgaaaacgagacactttgcttggaagctctcaaaccagaatcagaggagcttcataggctgattgtcagagggtgctgggcagctaggacacttgagtacccaatatttcgtgaccatgggaaaaatatcaagtatctggccataagctggtgccgtcttcaggaagatcctctactcctccttgcaccctatgtgccaaaccttgtctttcttagccttaacagggtgaatagtgcaagcaccttggttctttctgcagattgcttccctcagctgaagacacttgtcttgaagcgtatgcctgatgtaaaccacttggagattataggcggtgccctccaacacattgaaggtttatatgttgtgtcattgccaaagttggacaatgtccctcaaggcattgagtctcttaggtatctgaagaagctgtggctcttgggtctgcataagaatttcaggtctcagtggcaaaaaaatggaatgcaccaaaagatgcaacatgttccagagctgcatgtcaaggactag</cdnaseq>

Protein Sequence

<aaseq>MEAVILAVSKIGSVLVEEATKAAITKLSEKATNLKELPSKVEEI EDELKTMNNVIKQMSTTNLTDEVVKGWIAEVRGLAHRVQDIMDKYSYHALKLEEENSV KKLFTTPNYVTVFSEIAEEISKIEKKIENVAMRKKRWQQQSQHTPNPLADIERKRSQD CLLAPDDLVGIEDNRKLLTDWLYSKEQDNTIITVSGMGGLGKTTLVNNVYEREKNNFE VSTWIVVSQSYDVVDLLRKLLRKIVPDDQTQLLDLDAHDLKIRIKEKLKDENFLIVLD DVWNREAYTQIADAFPNFQASRIIITTRQGDVATLAQSARQLKLNPLEHTDALELFCR RAFYRNCKCPQNLEKLTNDIVVRCQGLPLAIVSIGGLLSSLPPENQVWNETYKQLRSE LTKNNNVQAILNMSYHDLPGDLRNCFLYCSLFPEDHELSRETVVRLWVAEGFAVQNEE NTPEEVAEKYLRELIQRNMLEVLGNDELGRVSTFKMHDLVRDLALSIAKEEKFGSANN YDTMERMDKEVRRLSSYGWKGKPVLQVKFMRLRTLVALGMKTPSRHMLSSILSESNYL TVLELQDSEITEVPASIGELFNLRYIGLQRTRVKSLPESIGKLSSLLTLNIKQTKIQK LPQSIVKIKKLRHLLADRYEDEKQSAFRYFIGMQAPKELSNLEELQTLETVEASKELA EQLMKLMQLRSVWIDNIRTDDCANLFATLSKMPLLSSLLLSASHENETLCLEALKPES EELHRLIVRGCWAARTLEYPIFRDHGKNIKYLAISWCRLQEDPLLLLAPYVPNLVFLS LNRVNSASTLVLSADCFPQLKTLVLKRMPDVNHLEIIGGALQHIEGLYVVSLPKLDNV PQGIESLRYLKKLWLLGLHKNFRSQWQKNGMHQKMQHVPELHVKD</aaseq>

Gene Sequence

<dnaseqindica>4942..7647#atatactctggtcgtctctcgccagctctgctcttcgagatactctcgatctgcacctcaggttagattggttaatcttgctttgtatcaagcagttcgtagctgtaatcagcttttacttttgtacttatgtctgctggaaaattctgccttttcttcctgtgaattttgcctcgatgaggtgaggaactgttaagtctctttgcttgaaaatattgggaaattatttctgaaatttcaccctgagcgagcatatcacttcatacactacatgtttcccgtatttttcaccttttattatcttattgttggttatctgctgcaaggatatcttaagctaggtgccaagcaagtgttgcatctccatactttgttcctgctgaaatgattagtactaatagtttccatgggcattcaaaccataatccaaagaaatgttcatatggtcaatcaatcctgacatatacgttgctatatagtagttgaattgttgctttacaaaataaccagtgtttctatagaggcaaaataattccttagtagaaagatggaaactggaaaggctgaaaacattagattgagtacacttgaattatcacctgccatagaaaacataggtgatcgccaagattcatcttctgagatatactgcgtaacgtgaatagattgtattgagcctcaggggatcttcaggggaccggtgtatataggaatacatgggaaagagataaggaaggattacatatatgtaaaaaatccacacaaatcaatcctatcttaatatgactttacctaccatacactctatcgccttcaaggctgatagctgggtatagctggtacttcaaaatattaagcagtaggtctcaggctaaatacaaatatgaaaactacaaacaaatggcacataaaaacacggaccctcagtgacagtaaatgttggagaccctgtaaacggaacagttctcaggttatagattttacgattacgattacaattgcgtgatctgccagcgagtccgagcggctgcctagggtcgtcgggtcttgttatagatggccaaaaggcccgctcggcccggcccggcccaggcatggccaggcatggcccaccatccatcgggccggcacggcccgatcagcacttcgtgctgggccgtgccggcccatgggctgcgcctcccgcccaggcacggctcaccagccgtcaggccgtgccgggccgacacgaaggcgcgggtggctcattgtgcctttttctaaataagtctatttttcgtccctcctctttgggctgtgacatatgtatagcgaaaataagtctatttttcgtccctcctctttgggctgtgacatatatatagtgaaaataagtctattttccatccctcctctttgggctgacatatatatagctaaaataagtctattttacatccttattctttcgaccgtggcatataatatgtctatttttactccgtattgtttatgtgtcgggcctggcctgcggcccatcgtgccgtgccggtggagaggcccaggcacggcctggtggtcgggccgggccggcacgggcccgacccttgacgggccgtgtcgtgcttgggccgggccaaaacgccgtgccgtgggccgggccttgggccttttggctatctataggtcttgtatccacccctggttcatagcgtcgcaccaaagtatttggcgtcaggcggccttgtaggatggtcaatgaagccatagaggttctacatgccaccccacatgacgccaagtcttgcagcactaggctacatataaactgcgccaaaatttcatggctctatgtttaaggtatgtttcagagaagttttatcagggggttaatttataataaaactagtaatatgcccgtactaacattacgggggaacttataatgtaaataaaagagtgaaataaatggtcggtctctaaacttgtgtgctggtgtcacttagatcagtgaacttgaaaattgcacgtttagatatgtgaacttggtttaatgtatcacccctagtccaatcgtcctttgattgcattcggccgctaatgtggcacaccacacagataacccttttgcgtctcagccccctccacatataccttctcaagcctggccgttagggtttcgacggtggagttagtggcaggaggcggtgaggtagcggttgtggcggccttggcggcgagattagtggcaagagacggtgccgtgtggcgaggttagcggtggcgtgacgtgtagaggggaccaagggcaaaagtgttacttgcgtgacgtgtcacgttgacggtcaaacgtggtcaaaaggcaattgaaagggatggtacattaaaccaagttcatgaatcttgacatgtaatttttaagtttagggatctaagtaacaccgccctacaagtttaagaactggacatatattttactctaaataaaataactaaaagatgataatttaaagttcacgtaagaaagaaactttctagatctttgagcaaagctatacgtccattaaggaacgttatgagatgagatctacataatggttgtgcttttcatgatgtaacattttctcggattcagtcaactttgttgcacggtgtaaagcatcaaccagatcaacactccaagaatttaccctgaaagaaccactaaaagacgggaaactcatacataattagtgggcttgtgatggcagtttgtgtcactcctctggcattatccaactcatcattttttatatggtatcacattcataacatccctcgcaacatttacaataacaatcagatacataataaaatgcagtattttcattaaaacaatatatgatggtcaataaggacgaggcttgtaatctactttcattgcttcctcttgacttccactgtgtttctttctggattgacaatttgtacaaggacaacctctgatatttggattcctatctgagaagtatctccaacctaagcagttcaaaaccaaaacatgcatagtgcttggacttgattaaggtaacaaatctgatatgatcctgttcgacagggcattcatcatttgatcctgtacacttacaatatcatgtcaatagatatttctaaaatgaccagcagacaattgcaagcttataagcttgaacaaaatttttataacttccataaccaataaatagattaccaggggtttttcatcagcaagcgatacaatctttggatgttaaccagaaaccagtccattatccaaagtctaacctttattttttatgcaacataacaaaaagagtataagatattagtccttgtacaatcatcatatttaataaaaaaaagtgtccccctttccataccaatgaggttcttgttagagcaaatatctgaaatttagagctaacacatgtcaattcagaaatgtgcaaaatactaaccgcttgttttccagtaactgaaaaaacatccagaataatcctgattcaccttgctatgaagatttttcttgcaaaagatagataataatttcatgagaaacaaatttcccctggttaacagtttcaggtttcaacgagctgcaaaaagaaggggatccaaaatctgttattatagtaaaatttgcacacctattaatacaagtgttattcaaaactcaattgaagtgtgatggattggggatataacctcaggagttacgtgtgattcaaaagtcaatttaagatttacttccaggcctcgaatataatattcagacctcaatttcagtcacacttccagtcttcaaattcatttttttattatggtgtaacatatatgctaggagtaaaatctgtcacggttaaatgcatggtaatggtaaggtaaagtgacaatgtatatcagtcatatagcacttctggaagcatataccattaagtaagaagaatagaatgacctaacttctcatatagtcatatgatcgctttcccgtatggcactccttaagaatactaaccagatattgttgatattgcgattaaccttacaaccaattgagttacttagaaatctgtccagaccagtctaatggaaaatataatgcactaaatagagcatgggaattgggaaagtgtcaagtatggcaatatgttcagattaaccaaatgggaaacaacaaggggtctgaagaacggaagcaggtggttggtgcgacaatgggtaggttctgctcctgctagatgatggtgatggatacacaaaataaatgtggaaaagttagagtgcaaatcattcatgattaaaatcaaaatcagtatcttgaaaattcacttagaaaaaatccagaactgatatcgccaaattcagaaaaattcagaacttgaaagaacagggatgccctgatttggtgtaaatacggtcaaattgttgcttgcacaaatttattgactgcaattaatatataagagatcattatactgataatgacctagctcgtcgggtcttgtatccacccctggttcatagcgtcgcaccaaagtatttgtcgtcaggcgaccttgtaggatggtcaatggagccatagaggttctacatgccaccccacatgacgccaagtcttgcagcaccaggctacatataaactgcgccaaaatttcatggctctatgcttaaggaatgtttcagaaaagttttatcagggggttaatttataataaaatatgtaaaaattaccctcatgtaacagggtgggcacatagaggatgaaaataaattaaaactcaagataatgtaagggatgaaacgaaactgagtggcacataagtatttattttcatagcctttttgctaattaactcctacaaggactgatgccctgtgttctgttagtttgctttagtttgttactgcattatgtaatacaatctgtgcctttgttcagcacacatggaggctgtaatcctcgctgtctcaaagattggttctgttttagtggaggaagccaccaaagctgctataaccaagctatctgaaaaagctacaaatcttaaggaactgccatcaaaggttgaggaaatagaggatgaactgaagacgatgaacaatgttataaaacagatgagtacaacaaatcttacagacgaggttgtcaagggttggattgcagaggtgcgaggtctggcccaccgtgttcaggacataatggacaaatattcataccatgctcttaaattggaagaagaaaattctgtcaagaaactcttcaccacaccgaattatgtcacggttttcagtgaaattgctgaagagattagcaagatagagaaaaaaattgaaaatgttgcaatgcggaaaaaacggtggcagcagcagtctcaacacactcccaatccgcttgcagatattgaaaggaaacggtcccaagactgccttctagctccagatgatctagttgggatagaagacaacaggaaactgttgactgactggttgtactccaaagagcaagataacacaataataacagtatctggtatgggtggattggggaaaaccaccctggtcaataatgtatatgagcgggagaagaacaatttcgaagttagtacttggattgtcgtgtcacagtcatatgatgtcgttgatttgctgaggaaattgcttaggaagattgtgcctgatgatcaaacacagctattagatttggatgctcatgacttgaaaattagaataaaggaaaagcttaaggatgaaaattttctaattgtattggatgatgtctggaaccgagaagcatacactcaaatagcagatgcattcccaaacttccaagcaagtcgcataatcatcacaacacgacagggtgatgtagcaactcttgctcagtcagcacgccaactcaaactcaacccattggagcacactgacgcgcttgaactcttctgtagaagggctttctacagaaactgcaagtgtccacagaaccttgagaaactgactaatgatatagtagttaggtgccaaggtctgccactggcaatcgtatctataggtggcctattgtcttcattgccaccagagaatcaagtctggaatgaaacatacaagcaacttcgaagtgagctcacaaaaaacaataatgttcaagcaattctaaatatgagctatcatgacttaccgggagatcttagaaactgcttcttgtattgtagcctgttccccgaagatcatgaattatcacgtgagaccgttgtacggttgtgggtcgcagaagggtttgcagtacaaaatgaagaaaacacaccagaggaggtggctgaaaaatatcttcgtgaattgatacaaaggaatatgttggaagttcttggaaatgatgagctaggcagggttagtacctttaagatgcatgacctcgtgcgggacctggctctttctattgctaaagaggagaagttcggctctgcaaataattatgacactatggagaggatggataaggaagttcgtcgcttgtcatcatatggatggaagggcaaacctgtgttgcaagttaaattcatgcgtctccggaccctagtggcacttggaatgaaaacaccctctcgtcacatgttatcctcaattttgtctgaatccaactatcttactgttctcgagttgcaagattctgaaataactgaagtgccagcatccataggagagctatttaatctacgctacatcggcctgcagcgcactagagtcaaatcacttccagaatctattgggaagctctcaagcctcctgactctcaacatcaagcaaaccaaaatacaaaagctaccacaaagcattgttaagattaagaagctgaggcaccttctagctgacagatatgaagacgagaagcagtcagcgtttcgctatttcattggaatgcaagcacccaaagagctatccaacttggaagaactccagacccttgagactgtggaagccagcaaagaattggctgagcagttgatgaaacttatgcaactacggagcgtgtggattgacaacataagaactgatgattgtgcaaatctttttgctacactatcaaagatgccacttctttccagcttgcttctatctgcaagtcatgaaaacgagacactttgcttggaagctctcaaaccagaatcagaggagcttcataggctgattgtcagagggtgctgggcagctaggacacttgagtacccaatatttcgtgaccatgggaaaaatatcaagtatctggccataagctggtgccgtcttcaggaagatcctctactcctccttgcaccctatgtgccaaaccttgtctttcttagccttaacagggtgaatagtgcaagcaccttggttctttctgcagattgcttccctcagctgaagacacttgtcttgaagcgtatgcctgatgtaaaccacttggagattataggcggtgccctccaacacattgaaggtttatatgttgtgtcattgccaaagttggacaatgtccctcaaggcattgagtctcttaggtatctgaagaagctgtggctcttgggtctgcataagaatttcaggtctcagtggcaaaaaaatggaatgcaccaaaagatgcaacatgttccagagctgcatgtcaaggactagaaactttgcttacttttgcagtattatttctgtctggtgattatgggctcagccacattatgcatttagtcttttccaacaaatgatcagtttatgacagatgagctagcggcaccactacatcgcaacctcgttattggaaataagtcctgaaatattggctttcatggccatcaggaaactactttgtcatatgtcctattgtttttgcttcacaactttgcagaatttatgaaactggtccttttattgttgacctgcattcttgattaatggtgtcactctttttcatctcc</dnaseqindica>

External Link(s)

NCBI Gene:Os11g0229500, RefSeq:Os11g0229500