BGIOSGA000556

From RiceWiki
Revision as of 10:07, 26 June 2012 by 127.0.0.1 (talk) (Created page with "{{IndicaGene| GeneName = BGIOSGA000556| Description = Putative uncharacterized protein| Definition = Oryza sativa Indica Group BGIOSGA000556, complete gene.| tag = OsI_042...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

BGIOSGA000556

Description

Putative uncharacterized protein

Definition

Oryza sativa Indica Group BGIOSGA000556, complete gene.

LocusTag

OsI_04295

Ensembl Transcript ID

BGIOSGA000556-TA

Ensembl Protein ID

BGIOSGA000556-PA

Length

2597

Source

Oryza sativa Indica Group

 ORGANISM  Oryza sativa Indica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:38912417..38915013

Sequence Coding Region

38914680..38915013,38914402..38914568,38914198..38914295,38913978..38914112,38913640..38913829
,38912417..38913532

Genome Context

<gbrowseImage1> name=IndicaChromosome01:38912417..38915013 source=RiceIndica01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=IndicaChromosome01:38912417..38915013 source=RiceIndica01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>ATGGAGTCGGTCGGCGACCCGCGGGATGGGCCGTCGACGGAGCACGCGTTCGAGGGGCAGCCCGTCCCGCCGTGGACGGAGCAGGTGACGCTGCGCGCCGTGGTGGCGAGCGCGGCGCTGGGCGTGGCCCTGAGCAGCGTGATGATGAACCTGGTGTTCACGTCGGGGATCATCCCGTCGCTCAACATCTCCGCCGGCCTCCTCGGCTTCTTCCTCCTCAAGGCCTGGACGCGCCTGCTCGACCAGCTCGGCTCGCCGGGCCGCCCCTTCACCCGCCAGGAGAACGCCGTCGTCCAGACCTGCGTCGTCGCCTGCGCCAGCATGACATACAGCGGTGGGTTTGGATCGTATCTGCTGGCCATGGATCGGAAGACGGCGGAGAAGACGAGCACCGGGGACGACTCCAGCGCGAGCGTCAGTGAGCCGGAGTTCGGTCGGATGATGGCCTTCTTCTTCCTCGTTAGCTTCGTCGGTCTCCTCGCCATTGTCCCCATGAGGAAGACAATGATCATCCGCCACCGGCTGACGTTCCCAAGCGGCTCGGCGACGGCTCACCTCATCAACAGCTTCCATACCCCTCACGGCGCTAGACAAGCGAAGAGGCAAGTCTCGCTCGTTCTCCGGTCGTCGTTGGCGAGCTTGTTCTGGTCCATCTTCCAGTGGTTCTACACCGGAGGTCCAAACTGCGGCTTCACTTCCTTCCCAACGTTTGGGCTCAGCGCCTTCAATCGCGGTTTCTACATCAGTTTGAACGGAACTTATGTGGGAATCGGGATGATCAGTCCTCACCTGATAAACGTCTCGATGCTCTTCGGGTCCATCATCTCCTGGGGGATCATGTGGCCGTACATCCGGAGCAAAAGAGGAATCTGGTACGACGCCGATCTCCAGGAGACGAACTTGAAGAGCTTCAGTGGATACAAGGTGTTTTGCGCCATAGCAATGATCCTCGGCGACGGCATCTTCCAGCTCGTCGCGATCTCGCTGAGGACGATACACACGGTGCGCCACCACCAGGTAGCGGCGGAGACGCTCAGGTCCTTCTCCGACGTCGACGCCATGCCGCGGCCGGTGATGAGCTTCGACGACCGCCGCAGGACGCAGGTGTTCCTCAGGGAGCACATCCCGAGCACCTTCGCCATCAGCGGGTACGTCGTCCTGGCCACCGTCTCCACCGTCGTCATCCCGCTCATGTACGGCCAGGTGAGGTACTACCACGTCGCCGCCGCGTACGCGTTCGCGCCCGTCCTGGCCTTCTGCAACGCCTACGGCACGGGCGTCGCGGAGACCAACTTCTCGGCGCAGTACAACAAGCTGGTGATCCTCATGTTCGCGTCGTGGATCGGGATCAAGAACGGCGGGATCGTCGGGAGCCTCGTCATCTGCGGCATCGTGTCGTCCATCGTCTCCACCGCCTCCGACTTCATGTCGGACTTCAAGACGAGCTACCTGACGCTCACCTCGCCGCGGGCCACGCTGGTGAGCCAGGTGATCGGCACGGCGATGGGGTGCGTCGTCAACCCGGCCGTGTTCACCGTCTTCCACCACTTCTACGAGATGAACCCCAACAAGACGTACCAGGCGCCGCTGGCCAAGATCTACCGGGGCATCGCCGTGCTCGGCGCCGGCGGCCTCGAGCTGCCCAAGTACTGCCTCGCCATCAGCGCCACCTTCTTCGTGCTGGCGCTGGCCGTCTGCGCGATGCGGGAGGTGGCCGCGCACGGCAAGTGGCGCGCCGAGCCGTACATCCCGAGCGTCACCGGCATGGCCGTGTCGTTCCTGCTGGTGCCGGCGGTGTCCATCGACATGTGCATCGGCAGCCTGATCGTGTTCCTGTGGAACCGCAACGACAAGCTGGGATCGCAGGTGTTCGGGCCGGTGCTGGCGTCCGGGCTCATCTGCGGCGACGGCCTCTTCTCCATACCGTACGCGCTGCTCGCGAGGTACGACGTCACGCCGCCCATCTGCATCAGGTTCCTCGGCCGGGTGCAGAACGACAAGCTGGACGCTTTCTTGGCGAGTAAGGCTAAAGCTGGATGA</cdnaseq>

Protein Sequence

<aaseq>MESVGDPRDGPSTEHAFEGQPVPPWTEQVTLRAVVASAALGVALSSVMMNLVFTSGIIPSLNISAGLLGFFLLKAWTRLLDQLGSPGRPFTRQENAVVQTCVVACASMTYSGGFGSYLLAMDRKTAEKTSTGDDSSASVSEPEFGRMMAFFFLVSFVGLLAIVPMRKTMIIRHRLTFPSGSATAHLINSFHTPHGARQAKRQVSLVLRSSLASLFWSIFQWFYTGGPNCGFTSFPTFGLSAFNRGFYISLNGTYVGIGMISPHLINVSMLFGSIISWGIMWPYIRSKRGIWYDADLQETNLKSFSGYKVFCAIAMILGDGIFQLVAISLRTIHTVRHHQVAAETLRSFSDVDAMPRPVMSFDDRRRTQVFLREHIPSTFAISGYVVLATVSTVVIPLMYGQVRYYHVAAAYAFAPVLAFCNAYGTGVAETNFSAQYNKLVILMFASWIGIKNGGIVGSLVICGIVSSIVSTASDFMSDFKTSYLTLTSPRATLVSQVIGTAMGCVVNPAVFTVFHHFYEMNPNKTYQAPLAKIYRGIAVLGAGGLELPKYCLAISATFFVLALAVCAMREVAAHGKWRAEPYIPSVTGMAVSFLLVPAVSIDMCIGSLIVFLWNRNDKLGSQVFGPVLASGLICGDGLFSIPYALLARYDVTPPICIRFLGRVQNDKLDAFLASKAKAG</aaseq>

Gene Sequence

<dnaseqindica>1..334#446..612#719..816#902..1036#1185..1374#1482..2597#ATGGAGTCGGTCGGCGACCCGCGGGATGGGCCGTCGACGGAGCACGCGTTCGAGGGGCAGCCCGTCCCGCCGTGGACGGAGCAGGTGACGCTGCGCGCCGTGGTGGCGAGCGCGGCGCTGGGCGTGGCCCTGAGCAGCGTGATGATGAACCTGGTGTTCACGTCGGGGATCATCCCGTCGCTCAACATCTCCGCCGGCCTCCTCGGCTTCTTCCTCCTCAAGGCCTGGACGCGCCTGCTCGACCAGCTCGGCTCGCCGGGCCGCCCCTTCACCCGCCAGGAGAACGCCGTCGTCCAGACCTGCGTCGTCGCCTGCGCCAGCATGACATACAGCGGTACGCCACCGCGCGCGGCACGACGCCGCGCTCTTGCCTCTTCCTGCATTGCCTCTTCCATTGATCTCGCCGTCGTAACGCCGACGTCGCTGGCGGCTGGCCTGTTCTTAGGTGGGTTTGGATCGTATCTGCTGGCCATGGATCGGAAGACGGCGGAGAAGACGAGCACCGGGGACGACTCCAGCGCGAGCGTCAGTGAGCCGGAGTTCGGTCGGATGATGGCCTTCTTCTTCCTCGTTAGCTTCGTCGGTCTCCTCGCCATTGTCCCCATGAGGAAGGTACGATCCACGAACGCACCTAAAAATACAAAAAAAAAAAAAAAAGAAGAAGAAGAGATCATAGCTCCCTGATTCTTCGCCGATTTACTGGTTCATCCGTCCGTAGACAATGATCATCCGCCACCGGCTGACGTTCCCAAGCGGCTCGGCGACGGCTCACCTCATCAACAGCTTCCATACCCCTCACGGCGCTAGACAAGCGAAGTGAGCAGATTATCACTAGCTTGGTGAGTTATAGCCATGTTGTCACATGATTTACGGTAATATCTGCGTCTACTTGTGATCACAGGAGGCAAGTCTCGCTCGTTCTCCGGTCGTCGTTGGCGAGCTTGTTCTGGTCCATCTTCCAGTGGTTCTACACCGGAGGTCCAAACTGCGGCTTCACTTCCTTCCCAACGTTTGGGCTCAGCGCCTTCAATCGCGGGTAAGCTGAGCCGAGCCTGAGCTAGGCAACGAACCGAGGAAACCGACGAATTCGAACACTGAATTCATGCAAAGTTTTTATTCGGGCTGGAGAAATTAATCGATCATCGGCTTGAGTGACTTGTGTTTCGTTGTTTGTTGCGTTGCAGTTTCTACATCAGTTTGAACGGAACTTATGTGGGAATCGGGATGATCAGTCCTCACCTGATAAACGTCTCGATGCTCTTCGGGTCCATCATCTCCTGGGGGATCATGTGGCCGTACATCCGGAGCAAAAGAGGAATCTGGTACGACGCCGATCTCCAGGAGACGAACTTGAAGAGCTTCAGTGGATACAAGGTACTACCAATGATCGAATATTTGTTGTTAGACAAAAAAAAAAAAAAGACGACGTCGATGATGTGCATCAAGAATCAGTCAGACTTCACTTTGTTGTGATCGAGAAGGTGTTTTGCGCCATAGCAATGATCCTCGGCGACGGCATCTTCCAGCTCGTCGCGATCTCGCTGAGGACGATACACACGGTGCGCCACCACCAGGTAGCGGCGGAGACGCTCAGGTCCTTCTCCGACGTCGACGCCATGCCGCGGCCGGTGATGAGCTTCGACGACCGCCGCAGGACGCAGGTGTTCCTCAGGGAGCACATCCCGAGCACCTTCGCCATCAGCGGGTACGTCGTCCTGGCCACCGTCTCCACCGTCGTCATCCCGCTCATGTACGGCCAGGTGAGGTACTACCACGTCGCCGCCGCGTACGCGTTCGCGCCCGTCCTGGCCTTCTGCAACGCCTACGGCACGGGCGTCGCGGAGACCAACTTCTCGGCGCAGTACAACAAGCTGGTGATCCTCATGTTCGCGTCGTGGATCGGGATCAAGAACGGCGGGATCGTCGGGAGCCTCGTCATCTGCGGCATCGTGTCGTCCATCGTCTCCACCGCCTCCGACTTCATGTCGGACTTCAAGACGAGCTACCTGACGCTCACCTCGCCGCGGGCCACGCTGGTGAGCCAGGTGATCGGCACGGCGATGGGGTGCGTCGTCAACCCGGCCGTGTTCACCGTCTTCCACCACTTCTACGAGATGAACCCCAACAAGACGTACCAGGCGCCGCTGGCCAAGATCTACCGGGGCATCGCCGTGCTCGGCGCCGGCGGCCTCGAGCTGCCCAAGTACTGCCTCGCCATCAGCGCCACCTTCTTCGTGCTGGCGCTGGCCGTCTGCGCGATGCGGGAGGTGGCCGCGCACGGCAAGTGGCGCGCCGAGCCGTACATCCCGAGCGTCACCGGCATGGCCGTGTCGTTCCTGCTGGTGCCGGCGGTGTCCATCGACATGTGCATCGGCAGCCTGATCGTGTTCCTGTGGAACCGCAACGACAAGCTGGGATCGCAGGTGTTCGGGCCGGTGCTGGCGTCCGGGCTCATCTGCGGCGACGGCCTCTTCTCCATACCGTACGCGCTGCTCGCGAGGTACGACGTCACGCCGCCCATCTGCATCAGGTTCCTCGGCCGGGTGCAGAACGACAAGCTGGACGCTTTCTTGGCGAGTAAGGCTAAAGCTGGATGA</dnaseqindica>

External Link(s)

EnsemblPlants:BGIOSGA000556