BGIOSGA000567

From RiceWiki
Revision as of 10:07, 26 June 2012 by 127.0.0.1 (talk) (Created page with "{{IndicaGene| GeneName = BGIOSGA000567| Description = Putative uncharacterized protein| Definition = Oryza sativa Indica Group BGIOSGA000567, complete gene.| tag = P0439E1...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

BGIOSGA000567

Description

Putative uncharacterized protein

Definition

Oryza sativa Indica Group BGIOSGA000567, complete gene.

LocusTag

P0439E11.17

Ensembl Transcript ID

BGIOSGA000567-TA

Ensembl Protein ID

BGIOSGA000567-PA

Length

3933

Source

Oryza sativa Indica Group

 ORGANISM  Oryza sativa Indica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:38732447..38736379

Sequence Coding Region

38736321..38736379,38735720..38735777,38735428..38735526,38734459..38734572,38734097..38734245
,38733916..38733997,38733717..38733802,38733331..38733555,38732447..38733254

Genome Context

<gbrowseImage1> name=IndicaChromosome01:38732447..38736379 source=RiceIndica01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=IndicaChromosome01:38732447..38736379 source=RiceIndica01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>ATGGGGCCCGACTGGGCCGTCAACCTCGAAATCTGCGACATCATCAACGCCGACGTCTGGCAAACAAAGGATGTGGTAAAGGCAGTGAAGAAGCGACTACAGAACACAGACCCAAAACTCTTGGAGACTATGATGAAGAATTGTGGTGAATATGTTCAACTTGAAGTTGCTGAGCAACATGTTCTGCAAGAAATGGTGAAAATCATCCAGAAGAAGAATGATATGTTAGTAAGGGATAAAATATTATTACTTTTGGACTCCTGGCAAGAAGCATTTGGTGGACCTGGAAGTAAATACCCACAATATCACTTTGCGTATCTTGAAGTAAAGAGGATAGGTGCCGTGTTCCCAAGGCGTCCTATAGATGCACCACCGATATTTACACCCCCGGCGACACATACTTCTCAAAGCTATGGTTCACCCAGATATGAGGCAGGAAGTCTGAATGAGATAATGTCTTCCGATGTTGAGACACTAAGTTTGGGTGACCTGAATAACATTCGAAATGTGACAGAACTACTATGTGATATGGTGCATGCTTTGAATCCATCTGATCACATGGCTGTCAAAGATGAAATTATCACAGATCTTGTGAGCCAATGTCGCTCAAACCAACAAAAGCTCATGCAGTTTGTCAGCTCAACAGGGAATGAACAGTTACTGAAGCAAGGTTTGGAGATAAATGATCGGCTACAAAATATTATTTCAAAATATGACATTATGGCCTCCAGTACTCATTTAGCAGTTGAAGCACCTCCGGCAGACAATGTTGAGGCTCCTAAAGAGGATCCAGCAGAAAAGCCATCTGCACCTCCTATCAGCACTCTTGAGGAGGAGGAGGAGGAGGATGAGTTCACTCGACTAGCACAAAGAAAAAATAAGTCTGTGATGACTAGTGATGATTCATTATCTAGCACTGGAGACCTTGCCCTTGTACCCATTGATATGGAAAGTTCAGAATCTTCATCTTCTGTTGCAAGCAATGCTTTAGTTCCTGTTGACCCAGCTCTTGTCAGTAGCAGTCCTCAAACAAAAGAGCAGGATATGATCGACCTTTTAAGCCTCACCTTGTGCAGTCCTACACATGAAGCTTCTACAGATTCTTCAACGCAGGGTCCTAATGGACCTCAGCAGCCTGCAGTTACTGATGGGCAGCACAACCCATCGGGTGTGCCACAGTATCCTTCAAACCACCAGTCGCATCCAATAAATCAGGAATATATTCCACAGAACAGAAACTATGTTGCACCTTGGGCACAAAGTGGTCAATATTATCCAGCACCACCATGGGCTGCACCTCCAAGTGTCAATTCTAATCCTTTCCAGTCAGCTACTTACCAAGAACAACCCCCACCTGTTGGTTCTGTTTCCTCAACCTATTCAGCTCCCTCAGCATCATATACTTCCCCTTCAATGGCATATGTGCCACCTTCAGCCTCATTGCCGATATGGAATGGTTCTACTACAAGTAATGGACTAAGTGCAACACAAGCTCAAATGAATGGGAATCAACAACCGCCAGGTTCTTCAGCGGCAGCAAGCAAACCTTATTACATACCTGACAATTTATTCAGTGATTTGATTGACTTGAAGGGTCTCAGTGGTGGAAATAAGATGGGCGTACCCACTAGCATGGGTAGTGCAAATGGTGGTCAACCTATGATTGGTGGAAAGAAGTAG</cdnaseq>

Protein Sequence

<aaseq>MGPDWAVNLEICDIINADVWQTKDVVKAVKKRLQNTDPKLLETMMKNCGEYVQLEVAEQHVLQEMVKIIQKKNDMLVRDKILLLLDSWQEAFGGPGSKYPQYHFAYLEVKRIGAVFPRRPIDAPPIFTPPATHTSQSYGSPRYEAGSLNEIMSSDVETLSLGDLNNIRNVTELLCDMVHALNPSDHMAVKDEIITDLVSQCRSNQQKLMQFVSSTGNEQLLKQGLEINDRLQNIISKYDIMASSTHLAVEAPPADNVEAPKEDPAEKPSAPPISTLEEEEEEDEFTRLAQRKNKSVMTSDDSLSSTGDLALVPIDMESSESSSSVASNALVPVDPALVSSSPQTKEQDMIDLLSLTLCSPTHEASTDSSTQGPNGPQQPAVTDGQHNPSGVPQYPSNHQSHPINQEYIPQNRNYVAPWAQSGQYYPAPPWAAPPSVNSNPFQSATYQEQPPPVGSVSSTYSAPSASYTSPSMAYVPPSASLPIWNGSTTSNGLSATQAQMNGNQQPPGSSAAASKPYYIPDNLFSDLIDLKGLSGGNKMGVPTSMGSANGGQPMIGGKK</aaseq>

Gene Sequence

<dnaseqindica>1..59#603..660#854..952#1808..1921#2135..2283#2383..2464#2578..2663#2825..3049#3126..3933#ATGGGGCCCGACTGGGCCGTCAACCTCGAAATCTGCGACATCATCAACGCCGACGTCTGGTGATCACCTGCTGTCTCTCTCACCTCAACTCCGCCGCGTCGTTGCTCCCGATTTTGCCCTGTTCGGTGTACGGCTTCCTGCGTGTGAGATTGGATGTTTAGTGGAAAAATTTCGGTATTCGATTAGGGTCTATTGGGTGTTCCGACGGGTTAAATTAGTTAGTTGATTCATTGTTTGGGGCAAATTTTGGTCGACTTTGGTAAGACGGCCGTGTACGCATATTTGAAGTAGAGTCGAGATGGTTTCAAGGCCCTGGTTTCGCGATTCGATGCTTTTTGTGGTGAATAGGATGCCATTCAACTTAGCCTTCAACGTGTGCGTGGATTTTGCCCTCTCCCAACTCCCAGGCTACCTGAGAGCTCTTTTGATAATTACCTGCACTTGCAAAGGGGATGGCTTTGACTCTAATCTGAAGAAAGCAATTGGAGTGAGGGAACTCATATAGGGCCATAGATAGGTCGATAGTATGAAATAAACTAGCTTATTTTTCTACTCCAAGTAATTATCTCCTTATCAAGCTAATATTTGTGAATTCTTATCAGGCAAACAAAGGATGTGGTAAAGGCAGTGAAGAAGCGACTACAGAACACAGACCCAAAAGTTCAGTTCTATGCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCATCTTTGAACAGAATACAAATTTTATTTCACAAAAAAGTAAAGGAGAAAGTTCCCTGAATACTCTCTTACCCAACAATCTGAAGTTGTTGTTTGTCTGATGTATTTAGTTTGAAATTTGTTGCAGCTCTTGGAGACTATGATGAAGAATTGTGGTGAATATGTTCAACTTGAAGTTGCTGAGCAACATGTTCTGCAAGAAATGGTGAAAATCATCCAGAAGAAGGTCCCTTTACTCCCCTCCTCACTACTAATTACTTGCTCTTCTGAATTCCTAATTTTGTGCACATGGTGATTTTCTCAGTTGTTTTTTTAATCATATGCATTCTTAATGGCATTGCATAATTTGAGATGACACTGAATACTGCTAGTGTTTTTGGTATAAGACATTTAGAGTTTCGTGTGTTACACGAAACCCCTGTTCTTTTGGCTGGTTTTACGGTTTGTCTAATTAGCAATCAAACTAATCTTCTAATGCGATTGGATGGTTATTCTGTAGAGAGCTAATATATTAAAACAGGATAATATAAATGGTTAAACCCATTTTCTTCACGGGTGGAAGGATATTTTTCATAATAAACGCTGATTGGTTGTTTGTAGTAGAGTAATAGGGTAACTAGCCTGCAAAGGCACTTGATGTCACCAGCCTATCATTAATATCATGGTTACTTGTTCAATGCCCTGCTTAAAGTTTGATATTATGTGGTAGCACTTACAATAACCCATATTTACCTTTACTGAATAGTTTGATATTATGTGGTAACACTTACAATAACCCATATTTACCTTTACTGAATTAATCTTTGCATTCGATTAGTCCTGACCTGTGCACTAAGAAAATTTGAGCTTAACACCAATTTCTTCACCTTTACTAATTTTGTGGTTAAGTTGAATCATCGTTGACAGTGCACCTTATCTTCTTTTCTCTCAGCACCTGATGTTTACACACATCAGATTTATTTCCTGGAATATCAATTCTCATTTGGTATTTGCATGTTGTTCAATTCACATCAATGAGGCAATTACTGGACATGCCCCTACTAAAATTATTAATGTTTTCTCTTTTGTAATTTTCTTTCAGAATGATATGTTAGTAAGGGATAAAATATTATTACTTTTGGACTCCTGGCAAGAAGCATTTGGTGGACCTGGAAGTAAATACCCACAATATCACTTTGCGTATCTTGAAGTAAAGGTATGTAACAAATTCCATGATTGTTCCTTAAGAAGTATAGAAGCCATGTTTCGTCATGGTATGTGGAACGATCATGATTACAAGAGGCATGTCATGTACTCATGTGTTCAACATGCATGGCTCACGTGTTTATGCTGAAATATTCATTTCTTTTCTTTGAAAACATCCCTATAATATCTAACCATATTTGCAACTTGTCAATTTTGAATTCAGAGGATAGGTGCCGTGTTCCCAAGGCGTCCTATAGATGCACCACCGATATTTACACCCCCGGCGACACATACTTCTCAAAGCTATGGTTCACCCAGATATGAGGCAGGAAGTCTGAATGAGATAATGTCTTCCGATGTTGAGACACTAAGGTTGCTTTCTTGGCATATCGGATTCATTTGGTTTGGTCAGCTATCACCCAACTACTTCAATTTATGTTTGTAACATTTTTTTCTCTTTTTCTATTACAGTTTGGGTGACCTGAATAACATTCGAAATGTGACAGAACTACTATGTGATATGGTGCATGCTTTGAATCCATCTGATCACATGGTAGTGAAAAATGTTCCTGCCTAAAAACTGTTACTTTTGACCATATGGACTAAATGCCAGCAGATTTTGATCTAGCTCTTGACTTGAACAACCTCCCTTTTTTTTTAACCCAGGCTGTCAAAGATGAAATTATCACAGATCTTGTGAGCCAATGTCGCTCAAACCAACAAAAGCTCATGCAGTTTGTCAGCTCAACAGGGTAATGTTATCAATATTTGTTGCTGCCCCTTGTATTTTGAATTTTGTAATGTAGTGATTTCAGGGTTCTCCTTTGTTTCTCTTCATAGCATTTCATAGGCAGAGCAAAGAAGTTTGCACAAAATGTGATGTGATATCTGAATTCATTTATCTGTTGTTTAGGAATGAACAGTTACTGAAGCAAGGTTTGGAGATAAATGATCGGCTACAAAATATTATTTCAAAATATGACATTATGGCCTCCAGTACTCATTTAGCAGTTGAAGCACCTCCGGCAGACAATGTTGAGGCTCCTAAAGAGGATCCAGCAGAAAAGCCATCTGCACCTCCTATCAGCACTCTTGAGGAGGAGGAGGAGGAGGATGAGTTCACTCGACTAGCACAAAGGTATTTATAAGTAGCCTTGTAACATGCAGCTTCATTTTCATGCACAGTTAACTTATGCTTCATTGTGCATCTGCAGAAAAAATAAGTCTGTGATGACTAGTGATGATTCATTATCTAGCACTGGAGACCTTGCCCTTGTACCCATTGATATGGAAAGTTCAGAATCTTCATCTTCTGTTGCAAGCAATGCTTTAGTTCCTGTTGACCCAGCTCTTGTCAGTAGCAGTCCTCAAACAAAAGAGCAGGATATGATCGACCTTTTAAGCCTCACCTTGTGCAGTCCTACACATGAAGCTTCTACAGATTCTTCAACGCAGGGTCCTAATGGACCTCAGCAGCCTGCAGTTACTGATGGGCAGCACAACCCATCGGGTGTGCCACAGTATCCTTCAAACCACCAGTCGCATCCAATAAATCAGGAATATATTCCACAGAACAGAAACTATGTTGCACCTTGGGCACAAAGTGGTCAATATTATCCAGCACCACCATGGGCTGCACCTCCAAGTGTCAATTCTAATCCTTTCCAGTCAGCTACTTACCAAGAACAACCCCCACCTGTTGGTTCTGTTTCCTCAACCTATTCAGCTCCCTCAGCATCATATACTTCCCCTTCAATGGCATATGTGCCACCTTCAGCCTCATTGCCGATATGGAATGGTTCTACTACAAGTAATGGACTAAGTGCAACACAAGCTCAAATGAATGGGAATCAACAACCGCCAGGTTCTTCAGCGGCAGCAAGCAAACCTTATTACATACCTGACAATTTATTCAGTGATTTGATTGACTTGAAGGGTCTCAGTGGTGGAAATAAGATGGGCGTACCCACTAGCATGGGTAGTGCAAATGGTGGTCAACCTATGATTGGTGGAAAGAAGTAG</dnaseqindica>

External Link(s)

EnsemblPlants:BGIOSGA000567