BGIOSGA000604

From RiceWiki
Revision as of 10:08, 26 June 2012 by 127.0.0.1 (talk) (Created page with "{{IndicaGene| GeneName = BGIOSGA000604| Description = Putative uncharacterized protein| Definition = Oryza sativa Indica Group BGIOSGA000604, complete gene.| tag = OSJNBA0...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

BGIOSGA000604

Description

Putative uncharacterized protein

Definition

Oryza sativa Indica Group BGIOSGA000604, complete gene.

LocusTag

OSJNBA0085D07.30

Ensembl Transcript ID

BGIOSGA000604-TA

Ensembl Protein ID

BGIOSGA000604-PA

Length

3132

Source

Oryza sativa Indica Group

 ORGANISM  Oryza sativa Indica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:38114344..38117475

Sequence Coding Region

38117200..38117475,38116727..38116836,38116606..38116663,38116265..38116528,38116011..38116148
,38115309..38115360,38115147..38115196,38114988..38115047,38114546..38114626
,38114344..38114433

Genome Context

<gbrowseImage1> name=IndicaChromosome01:38114344..38117475 source=RiceIndica01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=IndicaChromosome01:38114344..38117475 source=RiceIndica01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>ATGGCCATGGCGATGGCGTCGCCGCCCGCTTGCCCATTCCTCCTCTCGCTCTCGGCCGGCGCCACCGCCATTTCCACCGTGTCCGCCGCCTACGGTTCCGTTTCCGCCCCGCGCGCGCCTCTCTTCCTCCTCGCCTCCCCGCGTCCCGTCCCGCCTCGCCGACCCCTCGCCGCGGGCTCCTCATCTCCCAAGGCCGCGGCACCCGCCGCCGTCGAGATCCCCGAGGAGTACGTGGACGATGTTGATGCGGTGAACATTGCGCAGGACGTCACCCAGCTGATTGGGAAAACCCCAATGGTGTATCTGAATAATGTTGTCGACGGATGTGTTGCTAATATCGCTGCAAAACTTGAGTACATGGGACCTTGCAGGAGCGTCAAAGACAGGATTGGATTAAGCATGATTGATGATGCTGAAGAGAAAGGATTAATTTTTCCAAACAAGACCATTTTGGTTGAACCAACTACTGGAAATACTGGTATAGGCCTAGCTTCTGTGGCTGCTGCTAGGGGATACAAGCTAATAGCAACTGTACCTTCATCAATAGATGTTGAGAGACGTGTTCTTCTACGTGCATTTGGAGCTGAGATTGTGTTAACTGATCCTAACAAGGGACTAAAAGGAGCTCTTGATAAAGCAGAGGAAATTGTTTCGAAGACACCAAATGCATACATGTTTCAGCAGTTTAACAATTCAGCTAATAGTGAGATCCACTTTCAAACCACAGGCCCAGAAATATGGGAAGACACCTTGGGTACTGTTGACATACTAGTTGCAAGCATTGGCACAGGTGGCACCATTACAGGCACTGGGCGTTATCTGAAAATGATGAACAAAGATATTAAGGTTATTGGGGTAGAACCTGCTGAAACTAGTGTAATCTCTGGTGATAATGCTGGTTATATTCCAAGCATATTAGATGTTCAGCTGCTTGATGAAGTTGTGAAGGTTACCACCACAGAGGCAGTCGATGTTGCAAGGGAACTTGCACTAAAAGAGGGCCTGCTGGTTGGCATTTCGTCAGGTGCTGCCACAGTTGCTGCTATTAACGTCGCTAAAAGACCTGAAAATGCTGGAAAATTGATTGCGGTTATTTTCCCCAGCTTTGGAGAAAGATATATCTCTAGCATTTTATTCCGTCCGATATATGACTCGGTCCGAAGAATGAGGAAGAGATAA</cdnaseq>

Protein Sequence

<aaseq>MAMAMASPPACPFLLSLSAGATAISTVSAAYGSVSAPRAPLFLLASPRPVPPRRPLAAGSSSPKAAAPAAVEIPEEYVDDVDAVNIAQDVTQLIGKTPMVYLNNVVDGCVANIAAKLEYMGPCRSVKDRIGLSMIDDAEEKGLIFPNKTILVEPTTGNTGIGLASVAAARGYKLIATVPSSIDVERRVLLRAFGAEIVLTDPNKGLKGALDKAEEIVSKTPNAYMFQQFNNSANSEIHFQTTGPEIWEDTLGTVDILVASIGTGGTITGTGRYLKMMNKDIKVIGVEPAETSVISGDNAGYIPSILDVQLLDEVVKVTTTEAVDVARELALKEGLLVGISSGAATVAAINVAKRPENAGKLIAVIFPSFGERYISSILFRPIYDSVRRMRKR</aaseq>

Gene Sequence

<dnaseqindica>1..276#640..749#813..870#948..1211#1328..1465#2116..2167#2280..2329#2429..2488#2850..2930#3043..3132#ATGGCCATGGCGATGGCGTCGCCGCCCGCTTGCCCATTCCTCCTCTCGCTCTCGGCCGGCGCCACCGCCATTTCCACCGTGTCCGCCGCCTACGGTTCCGTTTCCGCCCCGCGCGCGCCTCTCTTCCTCCTCGCCTCCCCGCGTCCCGTCCCGCCTCGCCGACCCCTCGCCGCGGGCTCCTCATCTCCCAAGGCCGCGGCACCCGCCGCCGTCGAGATCCCCGAGGAGTACGTGGACGATGTTGATGCGGTGAACATTGCGCAGGACGTCACCCAGGTGCATGGCCGCTTCCCCATCCACGCATATGCTCCATTTTTTTTGCTTTAACATGGGAATGGGTTTCCATCTAAAACAGTACAGTGAAATTGGTTAAGGTCACTAGGATCATCTCGTTTAGCTTCCAGTATTGTGGTGGTTGAGTCTGTGAGGTACTGGAATTCCATGGTAAATTTTGGTATTTTTCTGTAAGCTCGCAATGGGCATGGGGGATAAATGATAATTGGCTTAGATCTCATTTTTTGTTCTGGCTAGGTCAAACTCACAATGGGCATGAAGTATAATTGGTTAGATCTCATTTTGTTATTCTACCCATGAGCATGACCACTCCCACTTCTGATCAAACATTTACTTGTTAATCAGCTGATTGGGAAAACCCCAATGGTGTATCTGAATAATGTTGTCGACGGATGTGTTGCTAATATCGCTGCAAAACTTGAGTACATGGGACCTTGCAGGAGCGTCAAAGACAGGTATGTTTTTGTCATTTGTGTATTCTTTTCTGCCAGTGCCACCTCTCATTCATGTCTTTTCAGGATTGGATTAAGCATGATTGATGATGCTGAAGAGAAAGGATTAATTTTTCCAAACAAGGTTAGATTATCCTGATAGTATTTGCAATACTACCATCATGAAGATTCTAACTTGTGCATATACTTCTACCTATGCAGACCATTTTGGTTGAACCAACTACTGGAAATACTGGTATAGGCCTAGCTTCTGTGGCTGCTGCTAGGGGATACAAGCTAATAGCAACTGTACCTTCATCAATAGATGTTGAGAGACGTGTTCTTCTACGTGCATTTGGAGCTGAGATTGTGTTAACTGATCCTAACAAGGGACTAAAAGGAGCTCTTGATAAAGCAGAGGAAATTGTTTCGAAGACACCAAATGCATACATGTTTCAGCAGTTTAACAATTCAGCTAATAGTGAGGTTGAAACTTAAGCCATATCATTTGCTCATTTTTACTTCTGTTATGTGGCACATTTAAAATCCATTTGCCAAAATCTTCTTTAGAAATTTATTGAGAAGCCACTTGGTAATTACAGATCCACTTTCAAACCACAGGCCCAGAAATATGGGAAGACACCTTGGGTACTGTTGACATACTAGTTGCAAGCATTGGCACAGGTGGCACCATTACAGGCACTGGGCGTTATCTGAAAATGATGAACAAAGATATTAAGGTCCGTACTCTTGTCTTCATTAAGCTCTTATTCTATCTTTGAAGAAAACTGGGATATGTTGTGTCCAAATGACAAGTGCTGCAACTTCCATTTTCACTAGGTCTGCATGAAATAAAGAATATGCCATTCTCATCCCTAGTAACTTTATCAGAATTTTCGGAGATATTTGGAGTGGAAATGGAATTTGAAACACATGCCGTTTACACATGATACATGACCACAACTGTGTCAGAATGATTATCTTATTTTGTTCTAAACTAAGATATACTTTTCCACCAAATTCAGTCATTCAGCGATGTTGCTTTAGAATTTATTCTGTTATCATTGTTACTCACTAACTGGTTGATGGTACCAATTACTCCTTAATTTAACTTTGGAAGTGCTTGTGTGCTCTTCCAAAAAGTGAAAAACACAGCTTCTAAAGAAATTTATGTCTTAGTTGCAGAAACTCACCACGTGTTAAATATCTGTACTATTCAATGATTTGAGGACAACAAAGCAGGGAAATCCTTTGATCTTATTATACCTTTTTTGTAAATTACTTGTTGGACAATTGGTTTCCTCAACCACAGAGATTTCCATTAGGTTAATATCAATATATCTTTGTTTTAAATTCACTTATGTGTTTGGCACTGCCCTTTAATTATCAGGTTATTGGGGTAGAACCTGCTGAAACTAGTGTAATCTCTGGTGATAATGCTGGTAAGTTCAATAACCCCATTCCAATTTAGCAATCAACATATTTGGGAATTGAGCATATTAAGAGTATATTCCTTGGCATTGACATCCTTTTGGTTGATGTCAATTAAAACAGGTTATATTCCAAGCATATTAGATGTTCAGCTGCTTGATGAAGTTGTGAAGGTCCGCAATGGCAACTTTAATTGTCCTTTTATTTTTGAAAAAAAATGTTGACAGTTGACAGTTCCTGCAGTGACTTAATTATGATTTTGAAAAATGCAGGTTACCACCACAGAGGCAGTCGATGTTGCAAGGGAACTTGCACTAAAAGAGGGCCTGCTGGTGAGCTGCTGCACATTAAACCCTGTTATTTTCAGCTACTTTATCAGATTATTGTCGCCGATTATTTGCTACAGGCCTCTAAAAATACGTTCTCTAAAAAAGCTTTATTCTACATTTCTACTGCATTGCTTATATCGTTTGTTCTAAGCTATTTGTTAAGTTTATCATCAAAACATTTAATTTATATATCTATAATTGTGTAGATAATCCACTACAATAATCCGGTCAATAATCTATTTCAAACTGGGCCTAAATGTATTAACTTTGGAGTTATTATTGATTCGATATTATCTTGATGTCAGCATCTTCCTCAAATTGCCATATATGTGATACATAACTTGTTATGGGGATTATTTTACAGGTTGGCATTTCGTCAGGTGCTGCCACAGTTGCTGCTATTAACGTCGCTAAAAGACCTGAAAATGCTGGAAAATTGATTGCGGTGAGAGCTTTTATCTATTAAAAGATGTTGCAGCTTAGTGAAGTTTGTTCATTTGTAACACAATGATCTTATTATAATCAACTCAGATGGTTAATAAATAATGAATTTGCAGGTTATTTTCCCCAGCTTTGGAGAAAGATATATCTCTAGCATTTTATTCCGTCCGATATATGACTCGGTCCGAAGAATGAGGAAGAGATAA</dnaseqindica>

External Link(s)

EnsemblPlants:BGIOSGA000604