BGIOSGA000613

From RiceWiki
Revision as of 10:08, 26 June 2012 by 127.0.0.1 (talk) (Created page with "{{IndicaGene| GeneName = BGIOSGA000613| Description = Putative uncharacterized protein| Definition = Oryza sativa Indica Group BGIOSGA000613, complete gene.| tag = P0432B1...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

BGIOSGA000613

Description

Putative uncharacterized protein

Definition

Oryza sativa Indica Group BGIOSGA000613, complete gene.

LocusTag

P0432B10.10

Ensembl Transcript ID

BGIOSGA000613-TA

Ensembl Protein ID

BGIOSGA000613-PA

Length

7388

Source

Oryza sativa Indica Group

 ORGANISM  Oryza sativa Indica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:37982356..37989743

Sequence Coding Region

37988865..37989743,37988621..37988692,37987883..37987920,37984350..37984407,37983857..37983893
,37983137..37983231,37982472..37982589,37982356..37982390

Genome Context

<gbrowseImage1> name=IndicaChromosome01:37982356..37989743 source=RiceIndica01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=IndicaChromosome01:37982356..37989743 source=RiceIndica01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>ATGGCGTCGAAGGCCGGAGGCGGGGGCGTCGCGCGGCGCGGAGGAGGGCGGATGCGGAGCCTGGGGAGGCAGGGATCCATGTACAGCCTCACCCTCGACGAGGTGCAGAGCCAGCTGGGCGAGCCGCTGCACAGCATGAACCTCGACGAGCTGCTCCGGAGCGTGTTCCCTGACGGCCTGGCCATCGCCGACGGTGCCGGTGCCGGTGCCGGTGCCACCACCAGTAGCCAGCAGCATCAGCCGGGCTCGGGCCTCCTGCGGCAGGGGAGCATCACGATGCCGCCTGAGCTCAGCAAGAAGACGGTGGACGAGGTGTGGAAGGGGATCCAGGCTGCTCCGAAGAGGAATGCCGAAACGGGCGGCGGCGGCGGCGGCGGCGGCGGCGGAGGTCGACGGCGGCGAGAGAGGCAGCCGACGCTTGGGGAGGTGACTCTCGAGGATTTCCTGGTCAAAGCTGGGGTTGTCACCCAAGGATCTCTCAAGGAGCTTAGTGATGTAGGCAATGTGGATCCGGTTGGAAGAGGTGTTACAGCAACCGGGACTGTGGATCTGGCACCTGGATCACACTGGATAGAGCAGTATAAGCAGCAGATTGCATCTACTGATGCTCATCACCATGGGCAGCAAGGTGTGCAGGGTGCTTATTTTCCGAATCGATTGGTCCCTCAGCCACTTAATGTTGGCCCCGGTGCTATTCTGGAGCCATCCTACTCTGATGGCCAGACTTCTTCAGGAATGATCGGCGGAATGTCCGATTCGCAGACGCCTGGAAGGAAGCGAGGCATGTCAGGGGATGTGGCAGATAAGTTGATGGAGAGAAGGCAGAAGAGGATGATCAAGAACAGGGAGTCAGCTGCCCGTTCAAGAGCCAGGAAGCAGGCCTACACTAATGAACTTGAAAACAAGGTTTCTCGTTTAGAAGAGGAGAATGTGAGGCTAAAGAGGCAAAAGGTAGTGCATCAAGTTACAATCAAGAGGTCTTCGTCATGTTTTGACAAAATTTTGCGGAAAGAGATCCCATCTCAGGTGGTTTATGAGGATGAAAAGTTCGCATTTCAAAATAGAGGGCTCAAAGGTGGAGCAGTGCAGACCCTTGCATTCAGAGACATATCACCCCAAGCTCCAGTACATATTATAATAATTCCCAAGGTTAAAGATGGATTGTCTAGGCTCTCAAAGGCAGAAGAAAGACACGTTGAGGTTATGGGCCATCTTCTTTACGCTGCTAAGACCATTGCAAAGCAGGAGAACCTTGATGATGGATTCAGGATTGTCATCAATGATGGGCCTAACGGATGTCAGTCTGATATCACCTCCATATTCATCTTCTAG</cdnaseq>

Protein Sequence

<aaseq>MASKAGGGGVARRGGGRMRSLGRQGSMYSLTLDEVQSQLGEPLHSMNLDELLRSVFPDGLAIADGAGAGAGATTSSQQHQPGSGLLRQGSITMPPELSKKTVDEVWKGIQAAPKRNAETGGGGGGGGGGGRRRRERQPTLGEVTLEDFLVKAGVVTQGSLKELSDVGNVDPVGRGVTATGTVDLAPGSHWIEQYKQQIASTDAHHHGQQGVQGAYFPNRLVPQPLNVGPGAILEPSYSDGQTSSGMIGGMSDSQTPGRKRGMSGDVADKLMERRQKRMIKNRESAARSRARKQAYTNELENKVSRLEEENVRLKRQKVVHQVTIKRSSSCFDKILRKEIPSQVVYEDEKFAFQNRGLKGGAVQTLAFRDISPQAPVHIIIIPKVKDGLSRLSKAEERHVEVMGHLLYAAKTIAKQENLDDGFRIVINDGPNGCQSDITSIFIF</aaseq>

Gene Sequence

<dnaseqindica>1..879#1052..1123#1824..1861#5337..5394#5851..5887#6513..6607#7155..7272#7354..7388#ATGGCGTCGAAGGCCGGAGGCGGGGGCGTCGCGCGGCGCGGAGGAGGGCGGATGCGGAGCCTGGGGAGGCAGGGATCCATGTACAGCCTCACCCTCGACGAGGTGCAGAGCCAGCTGGGCGAGCCGCTGCACAGCATGAACCTCGACGAGCTGCTCCGGAGCGTGTTCCCTGACGGCCTGGCCATCGCCGACGGTGCCGGTGCCGGTGCCGGTGCCACCACCAGTAGCCAGCAGCATCAGCCGGGCTCGGGCCTCCTGCGGCAGGGGAGCATCACGATGCCGCCTGAGCTCAGCAAGAAGACGGTGGACGAGGTGTGGAAGGGGATCCAGGCTGCTCCGAAGAGGAATGCCGAAACGGGCGGCGGCGGCGGCGGCGGCGGCGGCGGAGGTCGACGGCGGCGAGAGAGGCAGCCGACGCTTGGGGAGGTGACTCTCGAGGATTTCCTGGTCAAAGCTGGGGTTGTCACCCAAGGATCTCTCAAGGAGCTTAGTGATGTAGGCAATGTGGATCCGGTTGGAAGAGGTGTTACAGCAACCGGGACTGTGGATCTGGCACCTGGATCACACTGGATAGAGCAGTATAAGCAGCAGATTGCATCTACTGATGCTCATCACCATGGGCAGCAAGGTGTGCAGGGTGCTTATTTTCCGAATCGATTGGTCCCTCAGCCACTTAATGTTGGCCCCGGTGCTATTCTGGAGCCATCCTACTCTGATGGCCAGACTTCTTCAGGAATGATCGGCGGAATGTCCGATTCGCAGACGCCTGGAAGGAAGCGAGGCATGTCAGGGGATGTGGCAGATAAGTTGATGGAGAGAAGGCAGAAGAGGATGATCAAGAACAGGGAGTCAGCTGCCCGTTCAAGAGCCAGGAAGCAGGTGCAATATGTGTTTTACACCTTTCTATTTGTGGCAAATTTTTAATTAGCATTGTTCTTGCTGCATATGATGATTAAGAAGGCCACTGTTACTTTAAATTTAGTTTCTTCATGTGACCTGTGAGTTTGTGTATTACCCACATGATTGCATAATTACATTTCATTTGTGACAGGCCTACACTAATGAACTTGAAAACAAGGTTTCTCGTTTAGAAGAGGAGAATGTGAGGCTAAAGAGGCAAAAGGTACTGTCTTTTCCACTGCAATTATATCAGAATATTGCAAATTTCCCCTATCAAGTATTTTTCCCCGGTGCATGCTTGTCCTATAAATTAACCAATTAATTCTTCCCTAATTTGTCTTCACTTTCTGCCTCTGAATAGGAGTCAGACTATTTGGTAAGTGACAGGAAATAAATACTATCACTTGTACTGTCTCTTATGTCTAGTTTTTACTATTTCATATTGTCAAGCTACCTTGTTGATATGTACTTGTCATACATCACTAAGACCCTTTTATGGCCTTACTACACCTTATGACTTTTCAATGTTTCACAGCTCTATAATAATAATATAATCTTAAGTATTTGCTTCCACCACTTGAGGTGACTGTTTTTGGGTAGGACTATAGGAGTGAGCCATATACTGTTCATTCTATTAGTTGATCTAATTATTAGGCATGTCCCGTCAAGCATTTATTTGAGCCAGTATCTTATTTGTGCCTGAAGGGAGGAAACTAATTTTCTGGTGGATATTGGGGGTATCTTGTATTTTTCCTTAAATATCTTCGAAAAGACTACCTTATACTATTATTCACTCTAAGTCGATAATAAAATGGGGCAGCATTATACTAGGAGTAATCTTGTGATGGAAAACATAGAAATACATCGCAGTCTAATCAACAGCAATATTATCATCTGGTATGATGTGCTGTACTACTTCATAGGTAGTGCATCAAGTTACAATCAAGAGGTCTTCGTCATGGTCATTGTTTGTGTGTAGGAATTGTCTTCTGCATGTCAACTTTTGGATGACTGTCCAATAAAGTAACTTCTTACCTATGGCATTTGAAGAATTCTGCTTGCAGAATACTGTTGTGGACTTTGGTTCTAACATATTGCATCTCTGGTTCTAACATATTGCATCCCTCTGACTAATTGGTTAGCTCCTCAAACAAAGCAGTGTTAGCAATAAAAGATATTTTCTAAGTTATTTTGATCCCATTAACCCTGGATGGCCATGCGTCTTTTAAACATCCTTCATACTATAGGAAGATTAGCAAGGATCCAACGGACTGAATCATGTCCCTGGAAAGCTAGAAGTATTAATCTCATGTCTATTTATATTTCATATTTTTCTGGTACCACATTGTTTCAGTGCATCTGATGTGGCAAGAAAATTGGCAGTAGTACTCCTTTAATGATAATTCAAAGTTTTAGCACTTGCCACTGGATATCATTTAGCTAGTACTATATATTATGTCTAATTTTGTGCTTAATCCTACTATCAGCCAAACACTGGCCTGTTCCATATATTTTACACCATATAGTTTGGTATTCTGATGATGCCATATTGGGTTACTTATCCATACACAGCATTGACTTGTTTTCCCCTCTCATGCTATCTTCAGGAGTTGGATGAATTAATTTGCGCTGTGCCTGTACCAGAACCCAAGTATCAACTCAGGAGAACAAGCTCCGCAGATTTCTGATCATGCCCGCAGTATTTTATTTTATAGTTTTTGAAGTGCTCTTGCTTGTAAGTTTTGCCTCCTGGGGTTTAGAATCATTTCCTAGCTTCTTCTTGGCTTATGTCTAGCTTAGTGATTTGTATTGTGTAGATTAGCAGGAGCCTAGTATGTGTTCTGGTAGCACTGCTATCTTTCTGAGGCCTTGCTACTTTCCTAGCTAGGAGTATGTAAATTTGCTGGACACATCTAGGTTCTCAGAGCTTTCTTATACTTGGTGGTGACATCGGCTGCTCTTCCATAGAACTGCAGGAGGATGCAATCTTTAAGCCCAAATACTTCACTAAGATGAAGGGTTGTAACATTACTGTAAAATTCAATTTCTGGATAGAACTAGCTGGACTATGATCTGATTGTTGAGATATCTATCCTTGTCAGAAATAATTATTTTGGCTAATTTATGTTAGTGCGAAAAATCGTGGTTAACTTCATATGTCGCTGTCTGTCTCCAACATCATCTGCTATCAGTTGCTGAAACATACTTATCCTGAATGCCCCTGCTGTACTCACTGCATCACATCCTGAACCCGGTGTTCGTCAGATGCCATTTCGAGCAACAGTTCCCGCAGCAGCATCTGTTGGTGAAACATCTTTTACTCTTGGAATCTAGAATGCGATTTGTTTCTCTCTTTTTGTAATTTTCACAGCACGAATCTCATCCCATTCAAATCAGAATCTATAGAAGAAAACAAAAAAAAAACATCCGTATATGTCATTCTCACATTATCCAGATGATGATAGATTGATGCTTTGATAGGACTTGCTCCCTTGGCAGCTCGGGTCTTCTCATATGTTGTGGGCTTGAGAATCATAAGAGTTCGGATTAACACCAGCAATCAAATGCTTGTTATATATACTTCTTCGATCTGAAATAAGCTAGTAGTAATTAAATGCTTATTGTATATTTCCTCCGTTCCGAAATAAGTGAACTAGTAAAGAGCACTAGTAAAATACTCCCTCCTTCCTTAAATGTTTGACACAGTTGACTTTTTTAAACATGTTTGACCATTCGTCTTAATCAAAAACTTTTGTGAAATCTGTAAAACTATATGTATACATAAAAATATATTTAAAAATAAATCAAATGATAGGAAAAGAATAATAATTACTTAAATTTTTTAAATAAGACGAATAGTCAAAAATTTTTAAAAATGTTAACGGCGTCAAACATTTTGAGATGGAGGGAGTATGTTGGGAGCATCGTTTTAAGAAGAGCGGTTGTAATGCGGTACAGAGCAGTCTGTGCAGGCGTCTTTCACGTGTACGTTTACACTGGCAACATAGCGTAAAGCTGGAAAATACGTTTTGACCTTTAGTAAGCGGGAAAGCTGTTGAAAAGCTGAGGTGCGAGCGTGACGGTGATGGAGGCAGCAGTAAGTCAGCGATTGGGCGAGGAAGTCGGGGAAGGGGATGAGCCGGGCCAATGCCAGTCGACCGCCGCCGCCGCCGCCGCCGGCGAGCGGAAGCGGCGGCCGCCTCGCAGTTCTCGTGTCTCACTTGTCCCAATCTTCTCGGACGGCCGGCGAAAAGGAGGCCGCACTCGCCGCCGGCCCCTCCGACGGACCAACCATGTCAGTCTCTCTGTATCTCTCTCTCATCTATGCGCATCATGATGTCTTGTTCACTTGACCAGTTCTGCGAGAAATTTGTTCTAGTAAGCGCACGGAAGATATTGGATGTTGGATGAACAGATTCTATTGTGCAGTTTCGGTACCGGGGGCTGTAAAATTTGTACAAAAATGTAGCTCGAGCATGAGTTATTAGGTTAATGCAGTTCTGATCGTTATATAATTTGAATAACCCTTTAGATTGATTATGTGGGAGGAGTTGATTCGCTAAGGAGATCAAACTATCAAACCGGTGCTTAGTTTTTTTTTTTCGGTTGTAAGCATCCATGTTTATGGGCGGACACTGCAGAAACCGATCCTCTTCATAATGGGGGAGGTTAAGCACTGCTTGTGGGGGTTAAGTGCAGTAATAATAATGGATTTTGGTGCGTTTGCATAGCTATAAACATCCTGGGAAGAAACATCTGAAGATCAGGGCTAGATCAGCGCAAAATATTCTTGCTCAGAGTTAGGGGCCTGCATTTTCCTTGGATGTCTGGGTTGCTGGTTAGATTTGAATTATGTTGGATAGCTAATAGTAACTAACTTCACCTGGTTCTAGAATGAATCGAGATCTTGAGATATCTGAGAAATGTAGAATGCTGTACTGGGCTTATTCAAATGGTCCCTCATGCTGCAGTGCAGCTGTGGCCACCAATTATATACGGAGAGAGTAATTCTTCAACAGAAGCTCATTTATTAGAACAGAGCCACATAACAATTGAGCAATGCTTGATTGCATCAGCATCTGGTAGCAAAAGTACAAAATATTAATACAACAACCCATGTAGACTAGAAGTTGAGTTCCTGCACATCAAGTGATATTTATATGAACATGCATTTTTTATTCTTGCATGATATCTAATTGTAGAGAATTGTTCTGCGATAACTACTACTATATAACATAGCAAGTCAAGCTTCTTACATTTCTAAAATCTGCCTACTAGTCAGCGTTTGCTGAATATTAATTTTCATCTATTTTCTTTGAGAAGGCTTTACCACAGTTGTTCTGGTTGTGTTTACTATTTTATCCCCTTCATGAAATGTGGATTTCCATGGATGACCTTTGACCTTTCATTCAGACACCTATTTCTCTTCCTTGCAGTTTTGACAAAATTTTGCGGAAAGAGATCCCATCTCAGGTGGTTTATGAGGATGAAAAGGTGAAGTCTCTTCTGTGCTATAGGGATAATTTTCTTATATACAATGTCTATGAAAAACACCCTTTCTTCAGTCTTAAAAGTTAAAGAGCTATTTGCAGGTTTGTTTTTGTCAGCCCTACACCATAGTTCTCTTCTCCAAAACGGGAAAGAGTAAATTTCACAAAGCAACGACTTATTTTTTTGGGGTCAAAATTGTCATAAGAAAACCACAACCTTCTGTTCCAACTTCACAAAACTACAACTTTGGAACAGTAACTATTGAAAATCTACAACACTGTCACTCATCCTGTTATCGGACATCTGGAGTCATCCTGTTAGCCACACCCCACCTCCTACTTAGTACACAATAACTGGGCAAGCTGCACACAATGAACGGCCATGCCAACTCATCCCCCTATCCCCGCTACATCTGGATGTACTTATCAACCATAGCGATACATGTTCTTTTCCCTTCAGTTCGCATTTCAAAATAGAGGGCTCAAAGGTGGAGCAGGTGAGAATCATCAAGGCGGTGCTGCTCAACAAAGGCATTATCACAGAGAGCCGTTCCAGAGTTAGCAACTAGCATGTGCTAATGGAAGTTTGATTGTTTGTCGTACTAGTGGGACCAATGTCATATGATTTAGTTTTAGTTTTTCAATATTTATTCTTGCAAAGTTGTGCTTTCGTGAAGTTAAATAAAAAAAAAGTATACTTTTTAATCGGTTTTATGATTTTTTTTAATGCGGGAGAAAGCATTACTCATCTTCTGGGAACACAACAGATTTGTGTGTCATCACATTAGATGAAATGAAGGTTCCAAAGAAAGGTTCGAGATGTACATGTTATTTCATTTATATTTATCTCACTAGTCACCTGAAAGAATTTTGTGCCGTGGTCGAATTCTTTGTTCACATTCACAGCTAATATTGATATGGAAGGTTAATTATCCTCTCTCCATTCAGTGTTCATGAAAAGAACTGTTCTAGTTTTCTGGCTCGGTCCCCGTGATAACTAACTTTGGTATCTGCATTAATTAGTAATCACTGCTATGTACTAACTAATTCGTTTGTTGTTTGCTTGAACATGATTGTGAATGAAAATGAGCTGCTAATAGGTCACGTTTTGAATCTTATCAGTGCAGACCCTTGCATTCAGAGACATATCACCCCAAGCTCCAGTACATATTATAATAATTCCCAAGGTTAAAGATGGATTGTCTAGGCTCTCAAAGGTACTTAGTTTCATCTTATCTTTTAAACATCGTAATGGGTTCTATTTAGCTGATTCCATCTTGAATTCTTCATATGTGAAGTTCACAGTGAGCTATGTACCCAGTTCACTAGAATGAGTGTTATGGCAGAGTGGTAGATGCTTGAAAATAGTAGACTATTGCCTCTTTTTACTAATGGATAATAATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTAGCTTTGTACCTTAAGTTCAATATTATACCTTAGGCTTCTTGGATCTAACACAACATTTTACTTTTTTTTCATCCTCATGTCCGTAACATACTACGGATTAGTAACTATAAAACTCTACCAACTCGCTAAGAGGCCGGGCACTGCCACGCAGTTCATCCGCTCATCTACCATGTTAATATATCTTGCCGACTTGCCGTGTACACGTTGATTGTGGTAAAATAATTTACCAGAATCATGATATCACATTTCAAGAAATCATGATCCTTGAGTAGCCACATTATTTTGCTGAATGATACTACAACTGGCACCTATTTCAATTGTCATAGGCAGAAGAAAGACACGTTGAGGTTATGGGCCATCTTCTTTACGCTGCTAAGACCATTGCAAAGCAGGAGAACCTTGATGATGGATTCAGGATTGTCATCAATGATGGGCCTAACGGATGTGAGCATAAGCTTGATCCCATTGAGACGGTGAGACCTTTCTTATTAAGATAGTTGGACTGACTTTTTCTGTGTTATGTAGGTCAGTCTGATATCACCTCCATATTCATCTTCTAG</dnaseqindica>

External Link(s)

EnsemblPlants:BGIOSGA000613