BGIOSGA000642

From RiceWiki
Revision as of 10:09, 26 June 2012 by 127.0.0.1 (talk) (Created page with "{{IndicaGene| GeneName = BGIOSGA000642| Description = Putative uncharacterized protein| Definition = Oryza sativa Indica Group BGIOSGA000642, complete gene.| tag = P0003D0...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

BGIOSGA000642

Description

Putative uncharacterized protein

Definition

Oryza sativa Indica Group BGIOSGA000642, complete gene.

LocusTag

P0003D09.23

Ensembl Transcript ID

BGIOSGA000642-TA

Ensembl Protein ID

BGIOSGA000642-PA

Length

3158

Source

Oryza sativa Indica Group

 ORGANISM  Oryza sativa Indica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:37366606..37369763

Sequence Coding Region

37369112..37369763,37368279..37368500,37367672..37367919,37367426..37367565,37366606..37366747

Genome Context

<gbrowseImage1> name=IndicaChromosome01:37366606..37369763 source=RiceIndica01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=IndicaChromosome01:37366606..37369763 source=RiceIndica01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>ATGGGCGGGGCGGAGGACGCGCCGCGCGCGGCGGCGGCGAACGGGCACGGGAATGGGGCCACCGTGGAGGAGAAGCTGGACGAGCTGCGGCGCCTGCTGGGCAAGGCCGACGGCGACCCGCTCCGGATCGTCGGCGTCGGCGCCGGGGCCTGGGGGAGCGTCTTCTGCGCGCTGATGCAGGACGCGTACGGACACCTCCGCGACAAGGTGCAGGTCCGCATCTGGCGCCGCCCGGGCCGCGCCGTCGACCGCGCCACCGCCGAGCACCTCTTCGAGGTCATCAACGCCCGGGAGGACGTCCTCCGCCGCCTGATCCGCCGCTGCGCCTACCTCAAGTACGTCGAGGGCCGCCTCGGCGACCGCACCCTCTACGCCGACGAGATACTCAGGGACGGCTTCTGCCTCAACATGATCGACACGCCGCTCTGCCCGCTCAAGGTCGTCACCAACCTCCAGGAGGCCGTCTGGGACGCCGACATTGTCATCAACGGGCTGCCGTCCACGGACACCAGGGAAGTCTTCGGGGAGATTGGGAGGTACTGGAAGGAGAGGATTACTGCCCCCATAATCCTCTCTCTGGCCAAAGGGATAGAGGCCTCCCTGGATCCCCTGCCACGGATCATAACTCCCACACAGATGATTAGCAATGCAACGGGGGTTCCATTGGAAAACATTCTTTATCTTGGAGGCCCTAACATTGCTTCAGAAATTTACAATAAAGAATATGCAAATGCTCGTATATGTGGAGCTGACAAATGGAGAAAACCTCTTGCTAAATTTTTGAGGCAGCCTCATTTTATTGTATGGGATAATAGTGATCTCATTACACATGAAGTCATGGGAGGTTTGAAAAATGTGTATGCCATTGGTGCCGGTATGGTGGCAGCTCTAACAAATGAGAGTGCAACCAGCAAATCCGTTTACTTTGCTCTTTGCACATCTGAAATGATTTACATAACCCACCTTTTGGAAGAAGAGCCTGAAAAACTTGCTGGGCCATTATTGGCTGACACTTATGTCACATTGCTGAAGGGTCGTAATGCATGGTATGGGCAGAAACTAGCTAAAGGTGAACTGACACTAGAGATGGGTGACAGCATAAAAGGCAAAGGAACCATTCAGGGTGTCTCTGCAGTCGATGCATTTTATGAACTCCTGAGTCAGGATAGCTTAAGCGTAATGCATCCTGAAGCCAACAGATCTGTTGCACCGGTTGAGATGTGCCCAATCCTGAAGGCACTGTACAAAATTTTGATCAAGAGGGAACTTCCTCCTAATTCGATCCTTCAGGCCATAAGAGATGAAACAATGTATGATCCACGTGAAAGAATTGAGATGGCGCAGGGCCATTCACTTTACCGGCCATCTCTTCTTGGTCAACCTAAAGGAGATGCCAAAGCTTAG</cdnaseq>

Protein Sequence

<aaseq>MGGAEDAPRAAAANGHGNGATVEEKLDELRRLLGKADGDPLRIVGVGAGAWGSVFCALMQDAYGHLRDKVQVRIWRRPGRAVDRATAEHLFEVINAREDVLRRLIRRCAYLKYVEGRLGDRTLYADEILRDGFCLNMIDTPLCPLKVVTNLQEAVWDADIVINGLPSTDTREVFGEIGRYWKERITAPIILSLAKGIEASLDPLPRIITPTQMISNATGVPLENILYLGGPNIASEIYNKEYANARICGADKWRKPLAKFLRQPHFIVWDNSDLITHEVMGGLKNVYAIGAGMVAALTNESATSKSVYFALCTSEMIYITHLLEEEPEKLAGPLLADTYVTLLKGRNAWYGQKLAKGELTLEMGDSIKGKGTIQGVSAVDAFYELLSQDSLSVMHPEANRSVAPVEMCPILKALYKILIKRELPPNSILQAIRDETMYDPRERIEMAQGHSLYRPSLLGQPKGDAKA</aaseq>

Gene Sequence

<dnaseqindica>1..652#1264..1485#1845..2092#2199..2338#3017..3158#ATGGGCGGGGCGGAGGACGCGCCGCGCGCGGCGGCGGCGAACGGGCACGGGAATGGGGCCACCGTGGAGGAGAAGCTGGACGAGCTGCGGCGCCTGCTGGGCAAGGCCGACGGCGACCCGCTCCGGATCGTCGGCGTCGGCGCCGGGGCCTGGGGGAGCGTCTTCTGCGCGCTGATGCAGGACGCGTACGGACACCTCCGCGACAAGGTGCAGGTCCGCATCTGGCGCCGCCCGGGCCGCGCCGTCGACCGCGCCACCGCCGAGCACCTCTTCGAGGTCATCAACGCCCGGGAGGACGTCCTCCGCCGCCTGATCCGCCGCTGCGCCTACCTCAAGTACGTCGAGGGCCGCCTCGGCGACCGCACCCTCTACGCCGACGAGATACTCAGGGACGGCTTCTGCCTCAACATGATCGACACGCCGCTCTGCCCGCTCAAGGTCGTCACCAACCTCCAGGAGGCCGTCTGGGACGCCGACATTGTCATCAACGGGCTGCCGTCCACGGACACCAGGGAAGTCTTCGGGGAGATTGGGAGGTACTGGAAGGAGAGGATTACTGCCCCCATAATCCTCTCTCTGGCCAAAGGGATAGAGGCCTCCCTGGATCCCCTGCCACGGATCATAACTCCCACACAGATGATTAGCAATGCAAGTGAGATTCCTTTCCTTTTCTTTACACAATCTTACCATCATGTGCACTCTTTGCTTGAATTAACTTGTTCTTTGTTCTTTGTTTGTGCTTATCCGTAACTAGGATATTCTTTAATCTGGTATTGACAAATGCAGTTTATCTTTGCTTTAGACTACATTAGAAATTTGTAACTTTGTATGATTTGAGGATGAATAGTTTGTTTACTTCAGCTCTATGCCCTAACATAATTTACACAAAAGTAAGTCTATGTTGAACATACAAAGGCACAAGTCTGAAAATGACAACGCTGGCAAAAAAAGAACTGGATGGGACAAACATTGCCTTTATTCATGTCCTCTGTTGTTCAATAGTCCTTTAGCTGTTTAGCTGCTAGATATGTTACATGAATTGGTATAACTCCAGTTTCTGTCTTTCCACATAAATAAAATGAATTATTTAGATTCTCCCTTTTATTTTAAACTCAATTCAGGTTAATATGTTTAAACCTGATCATTTGTGGTGTGTGTTACTGTTAACGGCCGAGTGTTCATGCTTGGTTTTACTTCTTAACTGTTTTGAATTATATCCTTCCAATTTATTTCTGCAATTTATATTTGTTTTGTTTTCTGCAGCGGGGGTTCCATTGGAAAACATTCTTTATCTTGGAGGCCCTAACATTGCTTCAGAAATTTACAATAAAGAATATGCAAATGCTCGTATATGTGGAGCTGACAAATGGAGAAAACCTCTTGCTAAATTTTTGAGGCAGCCTCATTTTATTGTATGGGATAATAGTGATCTCATTACACATGAAGTCATGGGAGGTTTGAAAAATGTGTATGCCATTGGTGCCGGTAATTTCTATTTCCTCTCTTGATTGTTTTTGCTATCTTCTGTAATCACGGTAGAGCATATACTGTTGTGATATTTAGCATGGGGTACGTTGGAATGCACTGGTCAGCTTTAGTTGATGTTTTGCGTACTCTGCCTTGTTTTATATTTTTCAGAATGCACTGTTACCATCAAGATATATACAATGTTTTCTCCAGGAAGAAATATACCATAAATACAACTATAGAAATATGTGCTGTATATTGTGGCTTCATCTATGTTGCTATGCTTTACGTCGCGTTTTAATCTTGTCGTGGTCATCTGCCTTTTTTTTTCTTGGTTTATGCTTCTGTTAATTTTCTGAAATTTTGTTATCCTGCAGGTATGGTGGCAGCTCTAACAAATGAGAGTGCAACCAGCAAATCCGTTTACTTTGCTCTTTGCACATCTGAAATGATTTACATAACCCACCTTTTGGAAGAAGAGCCTGAAAAACTTGCTGGGCCATTATTGGCTGACACTTATGTCACATTGCTGAAGGGTCGTAATGCATGGTATGGGCAGAAACTAGCTAAAGGTGAACTGACACTAGAGATGGGTGACAGCATAAAAGGCAAAGGAACCATTCAGGTTTGCCCTTCCGTCTTGGTTTCTGAAATATCAATAACTGAGGAAATGATGCACCTTATGATGGTCTGATGGCCATGTACTTAATTTTGATATCATTTTATTCCAGGGTGTCTCTGCAGTCGATGCATTTTATGAACTCCTGAGTCAGGATAGCTTAAGCGTAATGCATCCTGAAGCCAACAGATCTGTTGCACCGGTTGAGATGTGCCCAATCCTGAAGGCACTGTACAAAATTTTGATCAAGAGGTTAGTATGTTCTTTTTGGATGTTATATCAATATCCCATACTTTTTTCAACATATTTAAACCCACGTGACCGAGCAAAGTTCCCTTTAGTCCTTATTGAATTCGTACTCTAGTAATTATAATCACAGCAGACATTTGAAAGTCTAGTTCTCTTGGTCAGTTCCAGCTGTTATCGTCATTTTCTCAAGGCACTAAATCAGTGGCAGCTAAAATGTAGGATTGTGCAAGGGTGTAGCTATATTTATGGCGCCATATTTTTCATAAAAAAATAGTCGACATGTATTTACATTGTAAGTTTCTAAAGTACATATGTAATTTTAGTATATTTACAATGTAAGTCTCAAAATTACATATGTAAGTACTAAAATTACATATGTAAATTCGAAAATTACATACTAATTACATATGTAAGTGGGTGTAAATGAGGTGTAACTACTGTGTAAGTGGCTGAAAAAAATCGACTGTAGCATATGGCGCCATATTTCTAGCAATTCCGTTGTGCAAATAGAGGAGGCCAGCAGTGCCAATATTTTGAGATTTGCTCAAATTTGAATAAATTCCATATTTTTTTTCAAGCTTTTGGGGGGCTCCTTTTCTCCACCCTCATACTACTAGCTGACAGTGCAGTCGTAGCGTATTTGTGCCACAGCCTACTCAATTTGTTCATTTGTATTTACAGGGAACTTCCTCCTAATTCGATCCTTCAGGCCATAAGAGATGAAACAATGTATGATCCACGTGAAAGAATTGAGATGGCGCAGGGCCATTCACTTTACCGGCCATCTCTTCTTGGTCAACCTAAAGGAGATGCCAAAGCTTAG</dnaseqindica>

External Link(s)

EnsemblPlants:BGIOSGA000642