BGIOSGA000846

From RiceWiki
Revision as of 10:12, 26 June 2012 by 127.0.0.1 (talk) (Created page with "{{IndicaGene| GeneName = BGIOSGA000846| Description = Putative uncharacterized protein| Definition = Oryza sativa Indica Group BGIOSGA000846, complete gene.| tag = P0439E0...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

BGIOSGA000846

Description

Putative uncharacterized protein

Definition

Oryza sativa Indica Group BGIOSGA000846, complete gene.

LocusTag

P0439E07.32-1

Ensembl Transcript ID

BGIOSGA000846-TA

Ensembl Protein ID

BGIOSGA000846-PA

Length

5597

Source

Oryza sativa Indica Group

 ORGANISM  Oryza sativa Indica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:34277195..34282791

Sequence Coding Region

34282739..34282791,34282524..34282643,34281265..34281352,34280977..34281018,34280525..34280614
,34280312..34280434,34279376..34279447,34279114..34279226,34279010..34279031
,34278841..34278906,34278547..34278603,34277921..34277967,34277748..34277829
,34277474..34277563,34277195..34277329

Genome Context

<gbrowseImage1> name=IndicaChromosome01:34277195..34282791 source=RiceIndica01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=IndicaChromosome01:34277195..34282791 source=RiceIndica01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>ATGAGCCGCACGCTCCTCTCCCACATCCTCCACCGCCCGCCGCCGCTCCTCGCGTCGAGGGGTGGTGGGCGAGGAGGAGCGCTCCCGTCCCGCCTCCGCACTCTCCGACTCAACTGCAGCGTGGCTGAAGCGACTGCCTCCGGCGACGAGGCGCCTGCTCCTCCGGCTAGGAAGAAAAGAGTAGTTTCTGGTGTACAGCCAACAGGATTGGTACACCTTGGAAATTATCTTGGTGCTATTAAGAATTGGGTTTCACTTCAGGATCTATACGAGACATTATTTTTCATTGTGGACTTGCATGCGATTACGTTACCATATGAAGCACCACAGTTGTCAAAAGCAACAAGAAGCACTGCTGCAATATATCTGGCTTGTGGCATCGACAGTTCAAAGGCTTCTATATTTGTACAGTCTCATGTTCGTGCTCATGTTGAGTTGATGTGGCTTCTGAGTTCTTCTACTCCTATTGGTTGGCTCAACAGAATGATCCAATTCAAAGAGAAGTCACGCAAGGCGGGTGATGAAAATGTTGGAGTGGCACTTTTGACTTATCCTGTTTTAATGGCTTCTGACATTCTCCTGTACCAGTCCGATCTGGTGCCTGTTGGTGAAGATCAGACACAACATTTGGAATTAACTCGCGAAATCGCTGAGCGTGTAAATAATCTATACGGTGGAAGGAAATGGAAGAAAATGGGAGGGAGAGGTGGTTCACTATTTAAGGTTCCTGAAGCCCTTATACCTCCAGCAGGGGCTCGTGTTATGTCCTTAACCGACGGTCTCTCCAAGATGTCGAAGTCTGCTCCTTCAGATCAGTCTCGTATTAACCTTCTTGATCCAAAAGATGTTATCATGAATAAGATTAAGCGCTGCAAAACTGACTCGTTCCCAGGCTTGGAATTTGACAACCCAGAGAGGCCTGAATGCAACAATCTTCTCTCGATCTACCAGATTATTACAGGGAAAACTAAAGAGGAAGTTATCAGAGAATGCGAAAATATGAACTGGGGGTCGTTCAAAACAACTCTTACAGATGCATTGATTGATCATCTGCAACCTATCCAGGTCCGCTACGAGGAGATAATGTCTGATCCTGGTTATTTGGATGGTGTTCTCTTAGAAGGATCAGGAAAAGCTGCTGAGATAGCAGACATCACCCTCAACAACGTATACCAAGCCATGGGTTTCTTGCGCAGATAG</cdnaseq>

Protein Sequence

<aaseq>MSRTLLSHILHRPPPLLASRGGGRGGALPSRLRTLRLNCSVAEATASGDEAPAPPARKKRVVSGVQPTGLVHLGNYLGAIKNWVSLQDLYETLFFIVDLHAITLPYEAPQLSKATRSTAAIYLACGIDSSKASIFVQSHVRAHVELMWLLSSSTPIGWLNRMIQFKEKSRKAGDENVGVALLTYPVLMASDILLYQSDLVPVGEDQTQHLELTREIAERVNNLYGGRKWKKMGGRGGSLFKVPEALIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIMNKIKRCKTDSFPGLEFDNPERPECNNLLSIYQIITGKTKEEVIRECENMNWGSFKTTLTDALIDHLQPIQVRYEEIMSDPGYLDGVLLEGSGKAAEIADITLNNVYQAMGFLRR</aaseq>

Gene Sequence

<dnaseqindica>1..53#149..268#1440..1527#1774..1815#2178..2267#2358..2480#3345..3416#3566..3678#3761..3782#3886..3951#4189..4245#4825..4871#4963..5044#5229..5318#5463..5597#ATGAGCCGCACGCTCCTCTCCCACATCCTCCACCGCCCGCCGCCGCTCCTCGCGTACGCCGCGCGCTCCGCCGTGCTCCGAGACCTAGCGGCTGCTTCTGCTTTGCTTCCGAGTCCCTAACTTTCCTCCCTGTTGTTTGGCTTCGCAGGTCGAGGGGTGGTGGGCGAGGAGGAGCGCTCCCGTCCCGCCTCCGCACTCTCCGACTCAACTGCAGCGTGGCTGAAGCGACTGCCTCCGGCGACGAGGCGCCTGCTCCTCCGGCTAGGAAGTAAGCCCCTGGCCGCCTAGTGTTCGGCGTAATGCGTCTGGTAGGAAGAGGATTGCGGCAGGTTTCTGTGGTATTTTGTTGTTATGCGATGGCGTAGCCTATGATGCATAAGTAAGCGTTTGCTCTGGTTCAAGGCTAGTATGCGTGAGAAGTCACGGATGAAATTCTGTAAGGCTTGTAGCTTGACTGTGGTAGGACCAGCTTGTGATGTAATGCGCCTGCAGGGTGTTGTAATGAGTGAGTACAGAATTACTGAGGTGTTGGGAGGGGCTAGGAATGGCAATGCAGGAATTGAATTGCTGTTGAAGCCTGCAGTTCACTTGCTGCTCTTAGTGTATATACTTGTTTGTTAGAATACTTAACTGGTGTTGGATGAAGCAAGCTACCCATACCATTTGATCTGAATTCATTTATTTTTCTCCACTAGACACTAGTTGTTAAATTAACCGTCACTTAATTTTTTTCGTGCTTGAAATGACTCGATGATAAATTCCACAGAAAAATTGTACATATCCTAGTATCCAACAGGCTAAAGTGAACTTATTTTTTGCGCACCAAGGAAGAGAGCATGCCATCACAGCTCGCTTCTCTTGGTGTGCACAAAATGAAGGTGTACTCAGTTGACTGATTGTTTTTGTATTTACAACTTCCACAATTGGTGCCTCATATACAAATTCAGTGTTCATTTCATGTAGTATCAAGAAACAATGACATTTTTTCAGTCCGATGAATATCTTGATCCTAAGTTAGTTTACACTGTCAAATTAATTAGTTTCTTCATGATCTTATATATACACTTGTTTGCACTGCTCAAAGTCATGAAAATATTATTGATGGCTAGTGTGAAGCCAGAATAGCAAAAATAGCTATTTTGGATATGTTTCTCATAGGGAATATTTTTAGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGCCCAAGTCCATAGTAGCATCTATTCCCACGGGTCTACTAGTTGTAGTTGTGATTTTCTTCTTCTTTTTTTTTTCAGATAACAAAGTTCTGGCCTAGTCCTGATTAAAATATTTATACGCGTTTCACTAATTTGAACATCTATATTTATCTCTACTGACTGCAGGAAAAGAGTAGTTTCTGGTGTACAGCCAACAGGATTGGTACACCTTGGAAATTATCTTGGTGCTATTAAGAATTGGGTTTCACTTCAGGTAGTGGTTTGAGAACTGCATCTTATTATTCTTTAATTTTGATGGTAATAATCTCAAAAGAAAATTTTTCAGAAACCATGAAGCTAGTGATAAATAATCAATCTGTAGCTCAGTAACAAGGCAACCTCAAATTCTGACATTGTTCCATCTAATTGAGATGCATTTGAGAGCTAAGCTAACTTATTGACTGATAATACACACTTTATCTGTGATACTTGACATCTTATGCATAGAAATTCCTTGCAGGATCTATACGAGACATTATTTTTCATTGTGGACTTGCATGCGGTAAGTTCTATCTGACCTCTTGGCATCCTACCAAAAAAATAATATTTATATTGTTTGTACAAGGTGTCACTTATTTTGTACTTTTATCTTTTCCTTGGTCAAATTAGTATGTTTCATTTTCCTTTAACACAAGCTGCTACATATTTGTGTAATATGTGGTGTCCATCTTTCACCAATGTTATTTATGGTAACCAAAGTGTTCATGATGTATATCCAAATTGCCGAGTTACCTTGCAGGATCAAGCAAGTGGTTCATGCTCATGTCTGATTTGTTTGTAGTTCATATTGCAATTTTTTTTTTGTCTTTACGATTAATTTTGTGGTCCTTTGTAAGCTTATCACGTTGTTTAAAATGTCTGCAGATTACGTTACCATATGAAGCACCACAGTTGTCAAAAGCAACAAGAAGCACTGCTGCAATATATCTGGCTTGTGGCATCGACAGTTCAAAGGTCTGCTTCACATATTTACATTATATGATGATGTTTGTTGCAGGTGCCCTTGTGGAGCTGAATGTTTTATGTTGTTTTGTGTCTTTACAGGCTTCTATATTTGTACAGTCTCATGTTCGTGCTCATGTTGAGTTGATGTGGCTTCTGAGTTCTTCTACTCCTATTGGTTGGCTCAACAGAATGATCCAATTCAAAGAGAAGTCACGCAAGGCGGTGCGTCATTCGCTGTATGACAGCTTCACCATCATCTTTTGTTTGAGCTGAATTCCTTTTCATATTACATAAGGGTCTAGAAAATGCAACAGCTCAATTCACAAGAGCACATGTTTTCAACATTTCCGAGATTGAATATTTGATGATTCCATAACACTGCCTGCTCAACAGATATGATATCATGTAGTTAAAAAACTGTTCTGCACCAGTAATATTCACATGGTGTGTTCCCTACTTAATTTTAATACCCTATCGAACCAGAGGAAGGGAAAGCATTACATAAAAATATCTTTTAGTGTATGCCTTCTACTTGTACACCACTACCATATGATTAGCGTAACAGCATTTTTGAGGCAGTAGTCATGTGAAGATCGTCCATAGTTCTAGTTTGTAACTTTCACACTGGACGCATTAACTCTTATTAATAGATCATAGGCACAGATAAATACCATTCTAACATTAGATTCTTTGCTTGGGTGTAACATCACTTATCTATCAGTTGGCTTTCCTATGTTCTGAACAATGTTTGGTCCTCAAGATTGCTTACCTGATTCAGTTAAAAAAAAAAAGATTGCTTACCTGACTGACACCAAATGATATTCATGCATCTCCCCTGATTTCTAAATTACTAGTAGACCACCTCTGTCATTCCTGAATGTGATGTGTAGTGCTTCTAAAAGTTTGAACCTCTGGCATTGCCATTTTACTGGAGCATTTATTCCACAATATTAGGAATCATGTGGTGCAGTTTCTTTTTTCTGCGTGCAAAACCCTCAACTCCTTATATCATGGTGTTGTACTGTTTAATCCGTCCTATTTTGGCAAATTTTTATTTTGTTGGGTTTATTTTTTTCTTATTTATAGGGTGATGAAAATGTTGGAGTGGCACTTTTGACTTATCCTGTTTTAATGGCTTCTGACATTCTCCTGTACCAGGTAAATATTACTCGTGGCTATTATTTTTCTGGGTTGTATTCTCAGTGATGTGTAGAAGCTAATATTAATAGATGTAGTTTAACAATTCAACTTTGTTATGGTTCTGCTTCTCTCCTTTCTATGATGCCAATAATAGCTAATGATTGCAGTCCGATCTGGTGCCTGTTGGTGAAGATCAGACACAACATTTGGAATTAACTCGCGAAATCGCTGAGCGTGTAAATAATCTATACGGTGGAAGGAAATGGAAGAAAATGGGAGGGTGAGAAAATTATATTATTTTATTCCACTTTTTTGTGTAAATAATCTATTGTAACGATTCTTTTTTGTATTTGTTCTTGCAGGAGAGGTGGTTCACTATTTAAGGTGTGTGCCATATTATTTATATATGGTTCAGCATCCATTTTATACCCTCGGAAGTCAGAACTGAACTTTGTTTTGCTTATTATACTTTCTTTTTGTTTATTAGGTTCCTGAAGCCCTTATACCTCCAGCAGGGGCTCGTGTTATGTCCTTAACCGACGGTCTCTCCAAGGTAGTTAGCCATACTCATTATCATTTTAATCCTGATCACAAAAAATGAAACTACTAGGACTTTTTTGTTATTAAATTACTTATTGAAGTGTCATTACACCACTAGTATTGATGCTCATTCATTAACATATAAACAATAACTTGCAGAGCTGATTCCAGGCATCTATATTTTATACTTTCTGCTCAGTGTGCTGTATATCTCTGCCATACTGACCTTTGTTCTGTTTATTCATGTTAGATGTCGAAGTCTGCTCCTTCAGATCAGTCTCGTATTAACCTTCTTGATCCAAAAGATGTAAGGGCACCAAGAATTGAATTCCCTGATGTGTTTCGTAAATATAGTGCATAACTAATATCAAATTTTATTACGCTAGCACATGGTAGAAGGTGCATTTTTGTGGGATAAGTTGCCAACAAACATGAAGTAATACAGACCAGTCTATTAGAAGATGATGTAAATTTCTTTTCCTAGGTTCTTGGCATCGCACTTTCTCTAAGACAGCACAGACTTCAGATCTTTAACCTGAGCCCGTTAGAAGGCCTCTTGTATTTGTGAACCAACTTCCCACCAGTTATGAACTCTGACTGAATGCACCCATTTAGTTGTAACAGTCTATCAGAAATCCCAAAGATTTTTTTTTCCTCGGCAAAAGTCTTTTACCTGAGCCTGGTCTAGCCTTGTGATTGAAAAATCGTTTCCCACATTTGTGAACTCTGATTGGATGCACCCATTCGCTTGTAAGATGAAATTTTACACAAAAATAAAAATCTGGGCCTAGATACTAGGTAGGTCATGTTTCCATCTACCAGGGACCATGCTTATGTTGTTTGTTCTGCATCTGGATTTATCCTGACAGTTGTCTGTGTTTTGCAGGTTATCATGAATAAGATTAAGCGCTGCAAAACTGACTCGTTCCCAGGGTCTGTAGTCTGTGACCTCTCACACGCTCTCACACACATATGTAGCCTTTGGTACATAAGAAACTCATTCATTTGACCTTGTACCTTCCAGCTTGGAATTTGACAACCCAGAGAGGCCTGAATGCAACAATCTTCTCTCGATCTACCAGATTATTACAGGGAAAACTAAAGAGGTGGCCAATCTTTACATGCATGCTTTGCAAACCTAACCAACCAGAGCGTGAAGCAGGGCCACCTGCACATGATGGTTTCTTTCGTGTCCAGTCCAGCGTCATGTTTTCTTGTTGACGATGACAAGATAATTTTCCTAGTTCACTATCCAAGAAGTTGATCGTTTCAATAATTTTATTTTGACAGGAAGTTATCAGAGAATGCGAAAATATGAACTGGGGGTCGTTCAAAACAACTCTTACAGATGCATTGATTGATCATCTGCAACCTATCCAGGTATTCCAATCCCAGGAAACGTTCTGATAGCACAGCTCATTGCTTACCATAATTATTGTACTTGATACCGTGGTCTGCTAATCATTTTTTTCTGGGTCGAGTAATCAATTTCGTTTTTACATCTCCCTCTTTTCACCCGTCTAGGTCCGCTACGAGGAGATAATGTCTGATCCTGGTTATTTGGATGGTGTTCTCTTAGAAGGATCAGGAAAAGCTGCTGAGATAGCAGACATCACCCTCAACAACGTATACCAAGCCATGGGTTTCTTGCGCAGATAG</dnaseqindica>

External Link(s)

EnsemblPlants:BGIOSGA000846