BGIOSGA000853

From RiceWiki
Revision as of 10:12, 26 June 2012 by 127.0.0.1 (talk) (Created page with "{{IndicaGene| GeneName = BGIOSGA000853| Description = Putative uncharacterized protein| Definition = Oryza sativa Indica Group BGIOSGA000853, complete gene.| tag = P0638D1...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

BGIOSGA000853

Description

Putative uncharacterized protein

Definition

Oryza sativa Indica Group BGIOSGA000853, complete gene.

LocusTag

P0638D12.37

Ensembl Transcript ID

BGIOSGA000853-TA

Ensembl Protein ID

BGIOSGA000853-PA

Length

5456

Source

Oryza sativa Indica Group 

 ORGANISM  Oryza sativa Indica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:34149238..34154693

Sequence Coding Region

34154024..34154693,34152313..34152390,34151746..34152045,34151016..34151161,34150847..34150936
,34150646..34150751,34150217..34150368,34150031..34150128,34149796..34149946
,34149507..34149614,34149238..34149402

Genome Context

<gbrowseImage1> name=IndicaChromosome01:34149238..34154693 source=RiceIndica01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=IndicaChromosome01:34149238..34154693 source=RiceIndica01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>ATGCCGCCTCCCCGCCGCCGCCCGCCCGCGCCCGGGCTTCTCATCCTCCTCATCTTCCTGGCGCTCGCCTCCCCCGGCGAAGTCGCCGGTGATGACGCCGCCCCCGGCAATGTCACCGCCTCGGCGCCGCTCCCCTGCTCCGACCTCTCGCGCGTCTGCACGGCGTTCGTCGCGTTCCCGGCGGCCGGCGAGGCCGCGAACGCCTCCGTGCTGGAGTCCATGTTCGACGCCGCGCCGGGGGACATCACGGCCGACGCGGCCGCCAGCCCCGGGTACGCGTTCGTCCGCAAGAACTGCTCCTGCCTCGCCTCCCGCACATACCTCGCCAATACGACCTACACTGTCCCCTCCGCCGCCGCCGGGGCGACGGCGAACGCCACGGCGGCCGACGTGGCTGCCGCGGCGTACGCGGGGCTAGCCGTGCCGCCGCCGGGCGGACCGGCTCTGCGGCCGCCGCGCCCCGGCGCCGTGGTGGCTCTCCACCTGCTCTGTGGCTGCTCATCCGGCCACTGGAACTATCTCCTCAGCTACGTCGGCGTCGACGGAGACACGGTGGAATCGCTATCAAGTCGGTTCGGGGCCAGCATGGACGCCATCGAGGCCGCCAATGGCATGGCCGGCCCTGATCCTATAACCACGGGAAAGGTGTACTACATCCCACTCAACTCAGTTCCTGGACAACCATATCCCGTGATGTCTCCTTCCTCTCCTACTCCTGCGCCAGCACCCGCACAAAATACATTCTCAGATGTATCAGAACATCATTCCACAAAATTCCCTTATGGATGGGTTATTGGCAGCATGGGAGTTGCACTTGCTTTGATTGCTATTGCTCTCCTTGCACTTGTTCTGTGCAAGCTCTCCCAATACAATCCCCAAGCTCCAAATAACCAGGGAAAGAGCCCAGACCAGTCTATATCACACAAGTTTCAACTTCTTAAGAGTGGTAGTTTTTGTTATGGTTCTGGAAGATACTTATGCTGCCAATTTGGAAATGTGAAACAATCAAGAACGGATGGCAGTGATCATCATATGAATACCCCAAAAGGTGTTGTAGTGGACGTGTTTGATAGGGAGAAGCCCATTGTGTTTACCTATCAAGAAATACTTGCATCAACCGATTCATTTTCTGATGCAAATCTTCTGGGTCATGGTACATACGGCTCTGTTTATTATGGTGTTCTTCGAGACCAGGAGGTCGCTATAAAGAGAATGACAGCAACTAAAACTAAAGAGTTTATAGTGGAGATGAAAGTTCTTTGTAAGGTCCATCATGCCAGTCTGGTAGAGTTGATTGGCTATGCAGCAAGCAAGGATGAACTATACCTGATTTACGAGTACTCTCAAAAAGGTTCACTCAAGAATCACCTTCATGATCCTCAAAGCAAAGGTTACACATCATTGTCTTGGATCTACAGGGTCCAAATTGCTCTTGATGCGGCTAGAGGACTTGAATACATTCATGAGCATACAAAGGATCATTATGTTCACAGGGACATCAAATCGAGTAACATCTTGCTCGATGAATCCTTCAGAGCAAAGATTTCAGATTTTGGTCTTGCAAAACTGGTAGTGAAGTCAACTGATGCAGAGGCTTCTGTCACAAAAGTTGTGGGTACATTTGGTTACTTGGCCCCTGAATACTTGCGCGATGGCCTGGCAACTACGAAAAATGATGTTTATGCTTTTGGAGTAGTACTTTTTGAGTTAATATCTGGAAAGGAGGCAATTACAAGGACTGATGGATTGAACGAAGGATCAAACTCAGAAAGGCGTTCCTTGGCATCAGTTATGTTGAGTGCACTAAAGAATTGTCGTAACTCAATGTATATGGGGAGCCTGAAAGCCTGCATTGACCCTAATCTAATGGACCTGTATCCACATGACTGTGTATACAAGATGGCCATGCTAGCGAAACAGTGCGTGGAGGAAGATCCTGTTCTTCGGCCAGACATGAAGCAGGCAGTAATCACGCTATCGCAAATACTGCTGTCGTCGATCGAGTGGGAAGCGACGCTAGCTGGGAACAGCCAAGTGTTCAGTGGTCTTGTGGCTGGGAGGTGA</cdnaseq>

Protein Sequence

<aaseq>MPPPRRRPPAPGLLILLIFLALASPGEVAGDDAAPGNVTASAPLPCSDLSRVCTAFVAFPAAGEAANASVLESMFDAAPGDITADAAASPGYAFVRKNCSCLASRTYLANTTYTVPSAAAGATANATAADVAAAAYAGLAVPPPGGPALRPPRPGAVVALHLLCGCSSGHWNYLLSYVGVDGDTVESLSSRFGASMDAIEAANGMAGPDPITTGKVYYIPLNSVPGQPYPVMSPSSPTPAPAPAQNTFSDVSEHHSTKFPYGWVIGSMGVALALIAIALLALVLCKLSQYNPQAPNNQGKSPDQSISHKFQLLKSGSFCYGSGRYLCCQFGNVKQSRTDGSDHHMNTPKGVVVDVFDREKPIVFTYQEILASTDSFSDANLLGHGTYGSVYYGVLRDQEVAIKRMTATKTKEFIVEMKVLCKVHHASLVELIGYAASKDELYLIYEYSQKGSLKNHLHDPQSKGYTSLSWIYRVQIALDAARGLEYIHEHTKDHYVHRDIKSSNILLDESFRAKISDFGLAKLVVKSTDAEASVTKVVGTFGYLAPEYLRDGLATTKNDVYAFGVVLFELISGKEAITRTDGLNEGSNSERRSLASVMLSALKNCRNSMYMGSLKACIDPNLMDLYPHDCVYKMAMLAKQCVEEDPVLRPDMKQAVITLSQILLSSIEWEATLAGNSQVFSGLVAGR</aaseq>

Gene Sequence

<dnaseqindica>1..670#2304..2381#2649..2948#3533..3678#3758..3847#3943..4048#4326..4477#4566..4663#4748..4898#5080..5187#5292..5456#ATGCCGCCTCCCCGCCGCCGCCCGCCCGCGCCCGGGCTTCTCATCCTCCTCATCTTCCTGGCGCTCGCCTCCCCCGGCGAAGTCGCCGGTGATGACGCCGCCCCCGGCAATGTCACCGCCTCGGCGCCGCTCCCCTGCTCCGACCTCTCGCGCGTCTGCACGGCGTTCGTCGCGTTCCCGGCGGCCGGCGAGGCCGCGAACGCCTCCGTGCTGGAGTCCATGTTCGACGCCGCGCCGGGGGACATCACGGCCGACGCGGCCGCCAGCCCCGGGTACGCGTTCGTCCGCAAGAACTGCTCCTGCCTCGCCTCCCGCACATACCTCGCCAATACGACCTACACTGTCCCCTCCGCCGCCGCCGGGGCGACGGCGAACGCCACGGCGGCCGACGTGGCTGCCGCGGCGTACGCGGGGCTAGCCGTGCCGCCGCCGGGCGGACCGGCTCTGCGGCCGCCGCGCCCCGGCGCCGTGGTGGCTCTCCACCTGCTCTGTGGCTGCTCATCCGGCCACTGGAACTATCTCCTCAGCTACGTCGGCGTCGACGGAGACACGGTGGAATCGCTATCAAGTCGGTTCGGGGCCAGCATGGACGCCATCGAGGCCGCCAATGGCATGGCCGGCCCTGATCCTATAACCACGGGAAAGGTGTACTACATCCCACTCAACTCAGGTGAACAAATGTTTAGCGATCATTCACTCCGGCAATTTGATCAATCAAACTTCCCTATTTACACACGGTATACTGCATTTTTCTTTTTGGCTGAACCGAGAATTTACCATTTATTTCATGAACATGGTGAAATTAATTGGTCTAATAATTTATAGATGCAGCGTTATTTAATGAGGGAGGAACAGAGATGCTTGCCCATTACATAGTAATCAGCTATATTGAACTGGATTTAACAGTTCATTTCTTGCTTGAGATCACCTCAGATAGGAAGGAGCATGTGTTGGAGTGTATAAAGTGAATTGCCCGTCTTTCCCTATCAGCTTAGGCTTTTAGGTGCAACTGGCTGGTGCATGCAACTTAATATGGTATCAGAGCCAGAGGTCTCGAGTTCGAATCCTGGCTGGCGCGCAATTAAATAAAATAATTGCAGCCCACTCCAATATTCCACGCTTGAGACTTGAGGGGGTCTCGCGTGAGGGGGAGTGTTGGAGTGTATAAAGTGAATTGCCCGCTTTTCCCTATCAGCTTAGGCTTTTAGGTGCAACTGGCTGGTGTATGCAACTTAATAGCATGAACACCATCTGAAACACGTAAAGTGCTCATTACCATTTAGTTCAGCCTAAACAAATCTCTGAAAATTGTTACCACTTAGCTTAGGCTTTTAGGTGCAACTGGCTGGTGCATGCAACTTAATAGCATGAACACAATCTGAAACACGTAAAGTGCTCATTACCATTTAGTTCAGCCTAAACAAATCTCATTTAGTTCAGCCTAAACAAATCTCTGAAAATTGTTACCACTTAGGCTTTTAAGTGCAACTGGCTGGTGCATGCAACTTAATAGCATGAACACAATCTGAAACACGTAAAGTGCTCATTACCATTTAGTTCAGCCTAAACAAATCTCTGAAAATTGTTACCACCATGGAGTTGTGAGGTCCATATGATTGCCTGTAGAGACTATACTGAATGGAGTAAAATAACAATCTGAAACACGTAAAGTGCTCATTACCATTTAGTTCAGCCTAAACAAATCTCTGAAAATTGTTACCACCATGGAGTTGTGAGGTCCATATGATTGCCTGTAGAGACTATACTGAATGGAGTAAAATAATCCCTTCATTCCTAGACTGGTTGGTGGCATCTGATGATGTGCTGCTACAGACAAATTTGGCACAAACAAGGAGGCACATTGTGATATCGAATGATTGTACTCGAAACACATGCCATGCTTCTAAGTTTTACTAAGAATTTAACCAAATTGTGTTGTCACCAAACATAAGGTACTATCTGTTTGATGTATTTAATAGAATGAGACCCTAAGTTACAGGCAAGGACCACAATACGTTTAATATTTGGCAATATTGGCCTTTTTGGTTAGCTAGGTGCTTCATCTTATTTTCTTATTTTGCATTTTTGCGGGTTAACCTTGTTCAATGTTATCATTCATATCTGTATAGCACTCCCTTTTTGGTACAAATACAATGATATTATTCCACTTTGTTCTTTTATGATGTTTTATTTTGTTATTTTGGATACCTCTCTTCTAGCTTGTAAGGTTTCTTTTGGGCATAGTTCTTGCTTTTACCTTTTTTTTTTTTGGCTTCATTCCTGTAAAACTATGTCATGTGCAGTTCCTGGACAACCATATCCCGTGATGTCTCCTTCCTCTCCTACTCCTGCGCCAGCACCCGCACAAAATACATTCTCAGGTATGGAGGTACCTGTTAGAGTTGATGCACTTTGTTTTCTAGGTCTTTTTTTTTTGGCAGCTATATGATATTCTGAGAACACTTAATGCTAATAGTTGTATAACATGCTACCACATTGTTGGCACTTCATTCTGAGGATCCTGTCCTATTGTTTTCTTCAAGTATTAATGTTGAAATATTTTGGTTTTGTTAGGTTGGGTAGCCTACAATTGAGATGTTCCTTTTTATGATAAACTAACAGTGTATTTTTCTGAATTACATCGGCAGATGTATCAGAACATCATTCCACAAAATTCCCTTATGGATGGGTTATTGGCAGCATGGGAGTTGCACTTGCTTTGATTGCTATTGCTCTCCTTGCACTTGTTCTGTGCAAGCTCTCCCAATACAATCCCCAAGCTCCAAATAACCAGGGAAAGAGCCCAGACCAGTCTATATCACACAAGTTTCAACTTCTTAAGAGTGGTAGTTTTTGTTATGGTTCTGGAAGATACTTATGCTGCCAATTTGGAAATGTGAAACAATCAAGAACGGATGGCAGTGATCATCATATGAATACCCCAAAAGGTTAGTTCATCTCCTTTTAACCATCATTGTGCTGCATAACATGTTTTTTTTTTGTATATATATGATGGGAATAATTCCTGGCCACTGCATCTGCACAGCGCGGCAATGCAGTGGTGAATGGGTTTTGCTGAGTTCATTTTGCGTGGATATTAATATAGGAGTGGCCTGATGAATCTAGTGCCTTATATAGGCATATTAAAGATCGAAATGTTGTCATATGCATATCCCTTAGGGGTTTTGTTTTTTCAAAATGTTATATTGTCATTGCATATGACACTCATGTCAGCATCGCTTAGTTGCTTTTCCTGCAATGATTTAAGCAGGAATACGATCTGTTCAAATTTTTGTATGAGTTCAAGTAGCACCAAACACATCTGATGATCTGAACTTCTATACTGAAGTACATTGTCCAAATAATATCAAAGAAAACAAAACGTCAAGATACAAATTCACAACTAAACAACTTCATGATTTCTTAGTGTGACAAGCCATTTCTAGCAGCCTAGAACGCTCTGCTTTGATTTGTTCTAATTTTCTTTCGTTCCTCTCACATACAAGCTGTTCTCAATTTTCCTCTCATGCAGGTGTTGTAGTGGACGTGTTTGATAGGGAGAAGCCCATTGTGTTTACCTATCAAGAAATACTTGCATCAACCGATTCATTTTCTGATGCAAATCTTCTGGGTCATGGTACATACGGCTCTGTTTATTATGGTGTTCTTCGAGACCAGGTATGTGATCTGAGCTGACCATATCCATGCAAAACTGTTGTGATTTTCCCTTGCCAATAACAAATATGTTTTTTCATAGGAGGTCGCTATAAAGAGAATGACAGCAACTAAAACTAAAGAGTTTATAGTGGAGATGAAAGTTCTTTGTAAGGTCCATCATGCCAGTCTGGTATGCCATTTTACAGTTGTGTAAATCCTTCTAATAGATTATGTCTTATATCCTGTTTATTGAATTTCATTTGTGTTACCCATGATTTGTCAAAGGTAGAGTTGATTGGCTATGCAGCAAGCAAGGATGAACTATACCTGATTTACGAGTACTCTCAAAAAGGTTCACTCAAGAATCACCTTCATGATCCTCAAAGCAAAGGTATACCATCATTTAGGACTTGTACGAGTGATTTACTAATTGCTTTCTGTTTAACTTGGGTAATCTCGCCATGTAATGTTTCCACTTCCAGCAGTTTTGATATTGTATTTGTTGAGTAGGTACCAATCAAAAGCAACCCTTATGTACAAGTTCTAAAATATTGCTGCTTGAGAACATTTCTTGATTGCTGCTAACTCAAGTTTTGTTAACTTTTCTTTTCTGAACACACATACATTTTCTATCGTTATTGATTGATTTTGTGTTGTTTCTTTTTCAGGTTACACATCATTGTCTTGGATCTACAGGGTCCAAATTGCTCTTGATGCGGCTAGAGGACTTGAATACATTCATGAGCATACAAAGGATCATTATGTTCACAGGGACATCAAATCGAGTAACATCTTGCTCGATGAATCCTTCAGAGCAAAGGTTAATTGATTTGAAATTTGTTTACTGATTTGTTTTCTCCTGGCACCATTTAGAACAGCTTGTTTACCTGCATTTTCTGTCTCCGTAGATTTCAGATTTTGGTCTTGCAAAACTGGTAGTGAAGTCAACTGATGCAGAGGCTTCTGTCACAAAAGTTGTGGGTACATTTGGTTACTTGGCCCCTGAGTGAGTACATTTTCTGGTAGCTCAGTATGGATTTGGAAAAGAAAAATATCTAGCTCAATCCTGACATTTCATTTATTCCTGTAGATACTTGCGCGATGGCCTGGCAACTACGAAAAATGATGTTTATGCTTTTGGAGTAGTACTTTTTGAGTTAATATCTGGAAAGGAGGCAATTACAAGGACTGATGGATTGAACGAAGGATCAAACTCAGAAAGGCGTTCCTTGGCATCAGTTGTAAGTTTTCTAGGTTCAGCATAAGCAATTGAACATATATGCCCATTATAACTTACGGGCTTAGAATTATTTTGCCATCCCAAGTTGCAGTGTTTTTCACTGGCTTTATTGAAGTTTTAGTATATTTTACTTGCTATTTTGACTCCAAAAGTTTTGAACTAATTTAGTTTTAACAATGCAGATGTTGAGTGCACTAAAGAATTGTCGTAACTCAATGTATATGGGGAGCCTGAAAGCCTGCATTGACCCTAATCTAATGGACCTGTATCCACATGACTGTGTATACAAGGTATGCACAATAAAATCTGTTGGTGCTTGATGATCAACATCTCCTGCACATTTCACATACCTTTGCTTCAAAGCTAAATCTCACTCTAAATTCTTCTTATAAAGATGGCCATGCTAGCGAAACAGTGCGTGGAGGAAGATCCTGTTCTTCGGCCAGACATGAAGCAGGCAGTAATCACGCTATCGCAAATACTGCTGTCGTCGATCGAGTGGGAAGCGACGCTAGCTGGGAACAGCCAAGTGTTCAGTGGTCTTGTGGCTGGGAGGTGA</dnaseqindica>

External Link(s)

EnsemblPlants:BGIOSGA000853

Retrieved from "https://ngdc.cncb.ac.cn/ricewiki/index.php?title=BGIOSGA000853&oldid=38577"