BGIOSGA001198

From RiceWiki
Revision as of 10:17, 26 June 2012 by 127.0.0.1 (talk) (Created page with "{{IndicaGene| GeneName = BGIOSGA001198| Description = Putative uncharacterized protein| Definition = Oryza sativa Indica Group BGIOSGA001198, complete gene.| tag = B1040D0...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

BGIOSGA001198

Description

Putative uncharacterized protein

Definition

Oryza sativa Indica Group BGIOSGA001198, complete gene.

LocusTag

B1040D09.1

Ensembl Transcript ID

BGIOSGA001198-TA

Ensembl Protein ID

BGIOSGA001198-PA

Length

2136

Source

Oryza sativa Indica Group

 ORGANISM  Oryza sativa Indica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:27631599..27633734

Sequence Coding Region

27633672..27633734,27633375..27633542,27633076..27633279,27632792..27632964,27632614..27632710
,27632371..27632524,27631599..27631774

Genome Context

<gbrowseImage1> name=IndicaChromosome01:27631599..27633734 source=RiceIndica01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=IndicaChromosome01:27631599..27633734 source=RiceIndica01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>ATGGCGGAGCAAGCTCCACTGGCGCCGATGCCTCGAGTCAAGCTCGGCACCCGGGGCCTAGAGGTGTCCAAGCTGGGGTTCGGGTGCATGGGGCTCACGGGCGCGTACAACTCGCCGCTCGACGACGACGCCGGCGCCGCCGTCATCGCGCACGCCTTCCGCCGCGGCGTCACCTTCTTCGACACCTCCGACGTCTACGGCCCCCTCGCCAACGAGATCCTCCTCGGCAAGGCGCTGAAGCAGCTGCCGCGGGAGCAGGTGCAGGTGGCCACCAAGTTCGGGATTCGGCGGGGCGCCGACGGCGTGCGCGCCGTGTGCGGCCGGCCGGAGTACGTGCGCGCCTGCTGCGAGGCCAGCCTCGGCCGCCTCGGCGTCGACTACATCGACCTCTACTACCAGCACCGCGTCGACACCACCATCCCCATCGAGGACACGATTGGTGAGCTCAAGAAATTGGTGGAGGAGGGGAAGGTGAGGTACATTGGGCTATCGGAGGCGAGCCCTGACACCATCAGGCGAGCTCATGCCGTGCACCCAATCACTGCAGTTCAGATGGAGTGGTCTCTCTGGGCTCGTGACATTGAACCCGAAATTGTGCCGCTCTGCAGGGAGTTGGGCATTGGAATTGTTCCCTACAGCCCTATCGCCCGCGGGTTTTTCGGAGGGAGAGGAGTGACAGAACAATTGTCTGCTGAATCTAATTTGCAAGGACATCCACGATTTTCTGCTGAAAATTTGGAGAAGAATAAACAGCTTTATCTGAAAACGGAAGAGCTGGCCAAGAAGCACCAGTGCAGCCCTGCTCAGCTAGCTTTAGCTTGGGTTCTTCATCAAGGGGATGATGTGGTCCCAATACCAGGAACAACCAAGATAAAAAACCTAGATGCCAACATTGACTCCTTAAAGGTGAACCTCACGGATGATGACCTGAAAGAGATCTCTAGCCAGGTACGCGAAGAAGATGTCGCTGGTGGAAGACAGTATACCTCATTTGCACATTACACCTGGAAGTATGCTGACACGCCAAAGAAGTAA</cdnaseq>

Protein Sequence

<aaseq>MAEQAPLAPMPRVKLGTRGLEVSKLGFGCMGLTGAYNSPLDDDAGAAVIAHAFRRGVTFFDTSDVYGPLANEILLGKALKQLPREQVQVATKFGIRRGADGVRAVCGRPEYVRACCEASLGRLGVDYIDLYYQHRVDTTIPIEDTIGELKKLVEEGKVRYIGLSEASPDTIRRAHAVHPITAVQMEWSLWARDIEPEIVPLCRELGIGIVPYSPIARGFFGGRGVTEQLSAESNLQGHPRFSAENLEKNKQLYLKTEELAKKHQCSPAQLALAWVLHQGDDVVPIPGTTKIKNLDANIDSLKVNLTDDDLKEISSQVREEDVAGGRQYTSFAHYTWKYADTPKK</aaseq>

Gene Sequence

<dnaseqindica>1..63#193..360#456..659#771..943#1025..1121#1211..1364#1961..2136#ATGGCGGAGCAAGCTCCACTGGCGCCGATGCCTCGAGTCAAGCTCGGCACCCGGGGCCTAGAGGTGAACATGCCCGCTTGCTCGATCGTCAATTCCTACTTCCCCGTATTTCCGTTCGTTCGGTTTGCGCTGAATCGGCCAGTGACAGTGAGTGTGAATCGATGGATGTTGAATTCGACGACCTTGCTGTAGGTGTCCAAGCTGGGGTTCGGGTGCATGGGGCTCACGGGCGCGTACAACTCGCCGCTCGACGACGACGCCGGCGCCGCCGTCATCGCGCACGCCTTCCGCCGCGGCGTCACCTTCTTCGACACCTCCGACGTCTACGGCCCCCTCGCCAACGAGATCCTCCTCGGCAAGGTCTGGTCGGGGCCCTTCCCTTCCTTCATCGTTCGTGGTTTCTTGTGGTTGGATTGGATGATGATGAGCTAACCCCATCGCCTTCGGATTTCCAGGCGCTGAAGCAGCTGCCGCGGGAGCAGGTGCAGGTGGCCACCAAGTTCGGGATTCGGCGGGGCGCCGACGGCGTGCGCGCCGTGTGCGGCCGGCCGGAGTACGTGCGCGCCTGCTGCGAGGCCAGCCTCGGCCGCCTCGGCGTCGACTACATCGACCTCTACTACCAGCACCGCGTCGACACCACCATCCCCATCGAGGACACGGTCTCTTGCTCCACCTCGCCCCCTTTCTTGATTTCTTTCTTCAGTTCTTTACCCTTCCTCACACACACCTTGTAAATTCTTGTATTGCCATTCGGGTTGGTGCTGAACTAGATTGGTGAGCTCAAGAAATTGGTGGAGGAGGGGAAGGTGAGGTACATTGGGCTATCGGAGGCGAGCCCTGACACCATCAGGCGAGCTCATGCCGTGCACCCAATCACTGCAGTTCAGATGGAGTGGTCTCTCTGGGCTCGTGACATTGAACCCGAAATTGTGCCGCTCTGCAGGTGAATTCCGCATCGCAGGTTTTACTAATGATTGATTGCTCATGCAAGTAAACTCATCGCAATCCATGGACTCCATTCCAGGGAGTTGGGCATTGGAATTGTTCCCTACAGCCCTATCGCCCGCGGGTTTTTCGGAGGGAGAGGAGTGACAGAACAATTGTCTGCTGAATCTAATTTGGTACACTCTACTCTAAGTGCCATTCCTTGATCTGCAGCATACAATTACTTTCAGTTACTTAGGTATGAACTTTGTTTTATTCTTTCCAGCAAGGACATCCACGATTTTCTGCTGAAAATTTGGAGAAGAATAAACAGCTTTATCTGAAAACGGAAGAGCTGGCCAAGAAGCACCAGTGCAGCCCTGCTCAGCTAGCTTTAGCTTGGGTTCTTCATCAAGGGGATGATGTGGTCCCAATACCAGGTGAGTGCTATAACCCCGTCCTGATGTAACTGATAGTGCACAATGCAGATCTATATGGCCAATGCTTTCTCCCTTTTCTTTTTTACCTTGAGATAAAGGGATTGATGGATATTCAAATCTCTTTCCTTGTTAGTGAAATGTGTAGTTCTGACAATAGAGCAAGATACACAAAGAGATAATATAATCGGATCAGCATGTAGTTTAATGTGAATTGTGATAGTGTTTGTTCGGGGAAAAAAAACATGGCTGCGAAGCATTTCATGGTAACATTGAGGTTTCAATTGTGATATACTTGTAGTAGTTTATTTGGTTGTAAAACAAAGGAGAAACACCCCTCTTTTGCCTCACAGTTTGTGCTACATGATGTTAACTTCAAACTTGTAGTGATGCATCTTTTTTTACTAATCTATAGCCCAAAAAAAATTGTGGCTCCAAAAAATGGTATGATTCTACAATATTGTTCCTCTTAATGCTTGTTGTTACCTTCAACTCTTCAAGTCCCAAGCACGGACATAAGCAGCAAAGCTCGTTGTTTGTATGCTCTAATATGCCGTGATTGATCCATCACTGAGAAACAATTCGTTACATTTTCTCAGGAACAACCAAGATAAAAAACCTAGATGCCAACATTGACTCCTTAAAGGTGAACCTCACGGATGATGACCTGAAAGAGATCTCTAGCCAGGTACGCGAAGAAGATGTCGCTGGTGGAAGACAGTATACCTCATTTGCACATTACACCTGGAAGTATGCTGACACGCCAAAGAAGTAA</dnaseqindica>

External Link(s)

EnsemblPlants:BGIOSGA001198