Os11g0293300

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Revision as of 09:07, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os11g0293300| Description = Survival motor neuron interacting protein 1 family protein| Version = NM_001074244.1 GI:115485136 GeneID:4350305| Le...")
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Gene Name

Os11g0293300

Description

Survival motor neuron interacting protein 1 family protein

Version

NM_001074244.1 GI:115485136 GeneID:4350305

Length

6379 bp

Definition

Oryza sativa Japonica Group Os11g0293300, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 11

Location

Chromosome 11:10736478..10742856

Sequence Coding Region

10736516..10736792,10736903..10737152,10740841..10741018,10742181..10742576

Expression

GEO Profiles:Os11g0293300

Genome Context

<gbrowseImage1> name=NC_008404:10736478..10742856 source=RiceChromosome11 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008404:10736478..10742856 source=RiceChromosome11 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcggacaacgccgccgccgccgccgacagcgcggcgcggacgaggtacgcgaggggccagctcgaggcgctgagggccgccccgtcggaggaggcgcaggcgcggctatgggccgaggtgtccgccgccctcgccgccgccggcttctccggcgagtacgacgggctgatggacgcagaggatccgtcgattaggaagccggggaggaaggggaagaaggccgccgggggcgggtggaagaggcacgacgcggcggcggcgacccaattcctggaaacggatgaggttggtgcctggaggaatggggattcaggggtccgctacgagcattacgtggatgagcctcgttccgtgcttcaagtgattgaggagccatttgttcagggtggaaatgcggagtacgaagatgctgacagcgatgatgattatgatggaattttgaagcccgccttcgcagttgatggggatcccgatttcgagtcgggtgagccgctcgatggctttgagtaccttcggcgtgtcaggtgggaagctaaccaaattcccagagtgaaggtggcgaagatagatttgaatacggctagaaatgaacagacgccttacatgccagaaattcctgatatagcaaagtgttctcctgatttgtgtgcatcaaagccctgggaagatacatttattacttatttctctgagacaagactggcattttcagagcttgacagctcagatggaccatcggtttctggtggaacaaaaaacttgttgaaaccaagcaacagatctgagccacagactgacccaacactgaccatgattcgcaacatggatgctgtctcaagagctgcaacactacggaactacatcgatatgattcaaagcttggataagctatcaaggaatgactgcctgtggctgttttcactgtgtgtcgccgtggacactcccttggacgccgagacatgtgcttcgctgaggtcgctgctgcgcaagtgcgcaaatgtccttgccgccaagttggagatggatgatgaagtcgctatgctgaacatactgatcacaatctctggacggttctttggacagtatgataatcattag</cdnaseq>

Protein Sequence

<aaseq>MADNAAAAADSAARTRYARGQLEALRAAPSEEAQARLWAEVSAA LAAAGFSGEYDGLMDAEDPSIRKPGRKGKKAAGGGWKRHDAAAATQFLETDEVGAWRN GDSGVRYEHYVDEPRSVLQVIEEPFVQGGNAEYEDADSDDDYDGILKPAFAVDGDPDF ESGEPLDGFEYLRRVRWEANQIPRVKVAKIDLNTARNEQTPYMPEIPDIAKCSPDLCA SKPWEDTFITYFSETRLAFSELDSSDGPSVSGGTKNLLKPSNRSEPQTDPTLTMIRNM DAVSRAATLRNYIDMIQSLDKLSRNDCLWLFSLCVAVDTPLDAETCASLRSLLRKCAN VLAAKLEMDDEVAMLNILITISGRFFGQYDNH</aaseq>

Gene Sequence

<dnaseqindica>39..315#426..675#4364..4541#5704..6099#ttctcgaaccttcgtcccctttcccctctcccatccccatggcggacaacgccgccgccgccgccgacagcgcggcgcggacgaggtacgcgaggggccagctcgaggcgctgagggccgccccgtcggaggaggcgcaggcgcggctatgggccgaggtgtccgccgccctcgccgccgccggcttctccggcgagtacgacgggctgatggacgcagaggatccgtcgattaggaagccggggaggaaggggaagaaggccgccgggggcgggtggaagaggcacgacgcggcggcggcgacccaattcctgggtacggctccctttctgttccctcctagtatcaatttagctgcaattactatttcccgttccatttcgggccagtttacggtttctagggttcttgttgcaatattgtagaaacggatgaggttggtgcctggaggaatggggattcaggggtccgctacgagcattacgtggatgagcctcgttccgtgcttcaagtgattgaggagccatttgttcagggtggaaatgcggagtacgaagatgctgacagcgatgatgattatgatggaattttgaagcccgccttcgcagttgatggggatcccgatttcgagtcgggtgagccgctcgatggctttgagtaccttcggcgtgtcaggtatgctttgatcatctggctagttagttctacaagggcattaaatattctgctaagatttgatagaagtgcgtaaaatgcttattatcgcagtattcttttgtgttcttagctatccattacttagccgttctactagtttctctagtgtgcttgaaccttaaatgctttagtatcaactagctacatcatctgcgtgttgatgcggatctgattgggaaatttccgagaatttgtcaaagaatcccaccaatacatgagaagaaatgcattttttctttcctggtactactagcatttaaatgtaagcatctggtgcttacatggagtattctcttctatggagaaagaggaggtcctggggtccttttttgtagaatggaaggaacagagagaaagagagggataggctggatttggcctgagaaaaggaggattttaaagcttttcgtttcaggaaattgcagaaatgaactttggtttatcaaaggcagttattatgtcctgaaaattcaagtaaaacctagtaaatgttttaaagcatgaagagttcaattaaaatatctccaagccacattaaattgcatcaaaacacaaatgtagtggtatcagtattgtgttgctaaacagttgtacccctgttcatttcagattatccaccggattattgccacggattatttgctccacacttctaaaatgtgttttctcaaaatatattaaaatttggtcagtgggatactactgtttgatgctaaataacctcacatctaagtatgatggttgtcttgcccattttttgcctataagtggacatatcaaaattttaggcaaatgtgaaattatcaaattaccaaccaatgcctgcttcaattgacagagggctgtcaaacagaaggctagcaattaagtgttatttagagaaacatttagtatgtcttgctcttactttatcatttccatgacaaccaggcaaaccacatgtctgactgtacactgcaacaacagagggtcatgctttgataatgattaagtggtcagtactgaaggggttatccaatagtttgtcttcattaccatattaaagaaacaaaatagtgccacacatgatcatacaccttttcatgaacagacagtttttgacacctccttaatgttcagaactcacttttaacccatatgaattacttttggtcatgataactaacccaattatctaatggctgtagtttaaatcaataattatctaatggtcaatgtcattgataatgtggcccaatgtgtgacttatcttgttgccaataatataggagagaaaagttgtatgaagaatgcattgtactaaactaccaatatggcctgactggctgacacttatcaacaatgcaattgagaactaatatatctgtcaatatttcatttattttggtatctgtatccctgcgtatttcagctctaaactctttgtttaacacctcaaggctataatagttaacgtttctggacccatgctgtcaccataatcagaatggttgctgactttgtccactcaaagcattgagttaatctcttgatcagatgagatatatcgatattcattcacgacatttcatgttgcacttcttgctccttcaactccacaagttagcttgatcattttgcacatgactgccagaaattgagtttcttcattctctctactccacgggtcctgtctcgctgtttgtcacctcagagtctttcatgaatttattcacgcaagctctgaattttaacatggtcaaatatgaaaaatgtttcgtattgtcttggcgacaaccatcatatttttgtcttggcgacaaccatgtggtgaaatccaaggtactgatcactctctgtcaccagcaggaagatgatctcttttctgtcccctgtagtacagtttcatatatgtgcacactccaagattaaatatatacattttcctttctcatatgttttcaatacatttcttactcagaagcccatagcatcagtgcatcactcgttaaaagcataataatagcaaaaaagagttttatttgagttagcatttggctgtaagatggaaagtcttatatgttttctgcattagcacagtgataagccacccagttgttgggctgctgaccatggttcaatcccttggtctcaacaaaagaaaggccctcactgagataactgttttgagagttataaatgaacgtcctggcaagccagcatttgggcctttcttgacctaattacagtgcattgtgggacgtttctccccaagggtcttttttttttgtctatgtgatgtatttttcagttgatctatcatcttcattttggtttcccagcctcccaggatattaagtactccctccagctccataattcttgatgttttggacaaggtttaagtcaaactcttatagctttgactagcaataactttaaaaatatttagcttaaatgcactagaacaacatatatagatttgtcttacaaagtactatgacaaaactaaaaatttatttatttattgtatacgtaatagaaaaatatagtcaaagatatattttggagaccgtgtcgttgtccaaaacgtgaagaattatggaaccggagggaatactgaaaatgtgagaaatgggaggaaattagtataaaaccaaccatcttcacgaccatttcaggtatttaatgtgttaaaacaggcatatccatgtataacatagtaaggcatatgttgcaagggcttcagggcttggtacatagaaaatgttggaggtgtaatctgttgttgccaccagaaatatgctagaaatttgtacagtgctttgtgccatagaatatggaacactaaaaaattggcagcttccttttctcttctcccttcctttccagatatcgaacttactttagaatgctacacaatcaaatatgtaagctttgcctctcagtaagagaaagcatgtccataccataatttgctgccaataatatgcctgtactgtctatgggaacaccatcatgtcatcatgcttctcaagacttcagaattcaaatgagaaacaaatctctgattttgttgcatgacggatggcagtttggaggatataagccatttgcttggtgtggataataatgagtaaaactttgtttcgatgtgtttgggaaatggtgggatttcaaccagttccagatgaatcctgagctaggactgcccattgcaggctcatccaagcaaaacatagagggcacaagcaagtagcaaacatatatatagcccatgttttttttatcaccaataaaacgaagccattgtttgctaaagcactactaacgttttacataaagacaattcaataccaccaaagtaaaacctcttgtttcagtaccataagaactctggtactaaattaatatctatgcaaaccctttatcgcctttccttcaaattatctcaactgatgtatctacagacaaaaattagggtatgcaacccaatagaaaacaacatcatctatgtgttctttatctgttgaattgattacagcagcaaaaaagaattacattattgttttcttatgagtttccgtggctaaaaaattggccatgtttctttctttgaaaaaaactacatttccttgttagtaacccaatcaacttcattttacaggtgggaagctaaccaaattcccagagtgaaggtggcgaagatagatttgaatacggctagaaatgaacagacgccttacatgccagaaattcctgatatagcaaagtgttctcctgatttgtgtgcatcaaagccctgggaagatacatttattacttatttctctgagacaagactggtaagctatattgtacaagttatgtaattacatacattaacattgtaatttcaaatatgcaaccatgcctaaccatatattatttttttataataaaaatacattctacacattttgcagctattttctgaagaaaactgttgtaattatatacttccatttggtgtgttttacatgatatatttcctctgttcgtgtttacatgataccctagactctgtgctctgaacctttgttaagtttgaccattaatgtgtttgaaactaatcattagatttatattaaaaacgctttcacaatattataattttattattgcagcttatttaaagtaataaaaagtgatggtcaaagttgcatcttgaagaccacaaattaaaaaccgacaagtaaaagaacatgtgtatattttactgcttagtcaagccctttatctaaatgaacattttcagtagagctataaacatattctcttgtttcctctttgttccatatgttttttcatgctatgaacttagtcgttggtgtcctgtattctatttttaatacgtattttgtgttcggtggtggcatgaatgcgtaaccttgaatgtgtatcctctagtctaaggacagttgtgttataacatggtttaacttataatgatacaaatctgcatgcattggtcttttatactttgtaaaactagccatatattttttggactttttcaagtctgttgtcaggtgtggtttcaaccatgttattcagctaatggctggtatgatcagacttgttaggcctgaaacttgagtaacattttgaggcttctagcatgtactgtaactgcacaaactggagcacaattagccaatgactcgttgtaatgtgagatgcaccaattggtagatttgaaatgagtacactcattgtgaatagaaagcagaagcagtgtcacctgttggaaactagtatgccaaaatttgcattgctcgcttgtatgttaaacaagaatagtgtcactttcgaccatcttctcttctttacgactcctgcaaagtacatggaaattgttttgcaatgagaagaacatgaaactgatacatgcacagttttgtatataatccttctgacaattagctgcttatttaaaacactaactggtatgttatgtttcttcaggcattttcagagcttgacagctcagatggaccatcggtttctggtggaacaaaaaacttgttgaaaccaagcaacagatctgagccacagactgacccaacactgaccatgattcgcaacatggatgctgtctcaagagctgcaacactacggaactacatcgatatgattcaaagcttggataagctatcaaggaatgactgcctgtggctgttttcactgtgtgtcgccgtggacactcccttggacgccgagacatgtgcttcgctgaggtcgctgctgcgcaagtgcgcaaatgtccttgccgccaagttggagatggatgatgaagtcgctatgctgaacatactgatcacaatctctggacggttctttggacagtatgataatcattaggatagcaaaggtaccccatcttgtgatatctcccttttgttagtatgcctagacgaagttttgtctccttactccttagactgcctatatagtgatggaatgtgcacaatcagttctctgaaattctggatgccttcatcactataatggctaatatagcgaggcaccttgagatgggcgtcgtaagttcaaagttcacgcctacggtatggttttcgaaacctaacattatcttctgtagtgactatgaattttgaaattaaacaactgacttcctgct</dnaseqindica>

External Link(s)

NCBI Gene:Os11g0293300, RefSeq:Os11g0293300