BGIOSGA001562

From RiceWiki
Revision as of 10:23, 26 June 2012 by 127.0.0.1 (talk) (Created page with "{{IndicaGene| GeneName = BGIOSGA001562| Description = Putative uncharacterized protein| Definition = Oryza sativa Indica Group BGIOSGA001562, complete gene.| tag = OS11G04...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

BGIOSGA001562

Description

Putative uncharacterized protein

Definition

Oryza sativa Indica Group BGIOSGA001562, complete gene.

LocusTag

OS11G0447300

Ensembl Transcript ID

BGIOSGA001562-TA

Ensembl Protein ID

BGIOSGA001562-PA

Length

6420

Source

Oryza sativa Indica Group

 ORGANISM  Oryza sativa Indica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:19355496..19361915

Sequence Coding Region

19361754..19361915,19361121..19361225,19360894..19360971,19359450..19359591,19359300..19359370
,19358458..19358554,19358036..19358247,19355496..19355741

Genome Context

<gbrowseImage1> name=IndicaChromosome01:19355496..19361915 source=RiceIndica01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=IndicaChromosome01:19355496..19361915 source=RiceIndica01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>ATGCGGGGGCTGGCGCGGGCGGGGAAGCGCGCCAGCGAGATGGCGTTCAACGCCGGGGGAGGCGCCGTCAACTGGTTCCCCGGCCACATGGCCGCCGCCTCGCGCGCCATCCGCGACCGCCTCAAGCTCGCCGACCTCGTCCTCGAGGTCCGCGACGCCCGGATTCCGTTGTCCTCAGCGAATGAAGACCTTCAACCTGTGCTTGCATCTAAGAGGCGTATCCTTGCTCTAAACAAGAAAGATCTAGCAAATCCTAATATAATGAATAGGTGGCTTCATCATTTTGAATCATGTAAGCAGGATTGCATTTCAATAAATGCACATAGCACCAGTTCTGTTAGTCAGCTTCTTGGGCTAGTGGAGTTCAAACTAAAGGAAGCAATCTCAAAAGAGCCGACACTTCTTGTTATGGTTGTTGGTGTTCCCAATGTTGGCAAGTCTGCCCTCATAAATTCCATTCATAGAATTGTCACTTCTCGTTTTCCAGTGCAAGATAAGAACAAGCGAGCTACAGTAGGACCATTGCCTGGTGTTACTCAAGATATTGCAGGATATAAGATTTCAAGCCAGCCGAGCATTTATGTACTTGATACACCAGGTGTTCTAGTACCAAGCATTCCAGACATGGAGACTGGTTTAAAGCTTGCTCTGACAGGAGCCGTCAAGGACTCTGTGGTTGGAGAGGAGCGTATAGCGAAATATTTATTGTCTCTTCTTAATATTAGAAAAACCCCTCTACATTGGGAGCGACTAGTTTACCGAAGAGAACAATTCAATGAAGAGGCATTCAATAGTAATGAAAAAGACTATAGAGATTCACCACGAAGGAGGAGGCGACCAAATAACTCTGACGCCTTATATGTACAGGACATGGTGATGGAGGTCCAGAGAACACTTTGCAGTACATTTATGGACTTCGCGGACAACACTGAGGATGAGAACGAGCTTGAAAGCCTGATAGACTCACAGCTTGTCGCTCTTCGCAAGGTGTTCAGGATACCTCACAAACCGTTTGATGAAACGCATGGTCCGGCCTCCAAGAAGTTGTTGACTCTTTTCAGATCAGGGAAGCTTGGCCCTTTCATCCTCGACGACCTTCCAGATAATCAGTAA</cdnaseq>

Protein Sequence

<aaseq>MRGLARAGKRASEMAFNAGGGAVNWFPGHMAAASRAIRDRLKLADLVLEVRDARIPLSSANEDLQPVLASKRRILALNKKDLANPNIMNRWLHHFESCKQDCISINAHSTSSVSQLLGLVEFKLKEAISKEPTLLVMVVGVPNVGKSALINSIHRIVTSRFPVQDKNKRATVGPLPGVTQDIAGYKISSQPSIYVLDTPGVLVPSIPDMETGLKLALTGAVKDSVVGEERIAKYLLSLLNIRKTPLHWERLVYRREQFNEEAFNSNEKDYRDSPRRRRRPNNSDALYVQDMVMEVQRTLCSTFMDFADNTEDENELESLIDSQLVALRKVFRIPHKPFDETHGPASKKLLTLFRSGKLGPFILDDLPDNQ</aaseq>

Gene Sequence

<dnaseqindica>1..162#691..795#945..1022#2325..2466#2546..2616#3362..3458#3669..3880#6175..6420#ATGCGGGGGCTGGCGCGGGCGGGGAAGCGCGCCAGCGAGATGGCGTTCAACGCCGGGGGAGGCGCCGTCAACTGGTTCCCCGGCCACATGGCCGCCGCCTCGCGCGCCATCCGCGACCGCCTCAAGCTCGCCGACCTCGTCCTCGAGGTCCGCGACGCCCGGGTGAGTGCCACGCTCCGCTCCGCTCCGTTTGCGCTCCTCGGTATACCTGCCTCTTTCTTCGCCTTCTCGAATAAATGCCGCTCGGTGGGTGATTCTAGTCGCTCCGACGGTGTTCGACGAAATGTCTCGCCTGTCTGTGAGTGTGTCATGTAGGAATGCGGTGGAACGTGAGTAGTGGAATCAACTCCGAAACAGCACTTGATTGTGCAGAGTTTCATACTCTATGTACTATAATTGTGATCCTCGTGCTTAAGTAGCTTCTACTTACTTTAAAACTAGTTCTTTTTTTTCTTTTAGAAATTGTCTTTTACAAGTTGGTGAATAATTTGGCTGTGTGCCTACGGGCAGAGGCTGGAGATGTAACCCATTTCCATTATCTAAAAAAAAACAAGTTGGTGAATAATGTTCCATTCAATTCAATTATCATCTTTTGATTTTTTATTGCTGCATTTTCATGTGCAGTTCGTTTGTTCGTCTGTATTGTATTCCTCTGATTACTGATGTACACCTATTGTAAGTTATGTCCAGATTCCGTTGTCCTCAGCGAATGAAGACCTTCAACCTGTGCTTGCATCTAAGAGGCGTATCCTTGCTCTAAACAAGAAAGATCTAGCAAATCCTAATATAATGAATGTAAGTGTACACTGATTTTTAGCTCAGCTCCTCAAACTTATTTGTCAATTCATGTTGAAACATTATTACTTTCATGTACCTTCCCAGTTATGTTGTTTGGCAAATATGATTTATTATTTACTCACAAGAATTTTACATATTATTTGCAGAGGTGGCTTCATCATTTTGAATCATGTAAGCAGGATTGCATTTCAATAAATGCACATAGCACCAGTTCTGTTAGTCAGGTCAGTTGACTGTTAATTCCTATTTTATCCATTTTTTTTCTATTGTAAACTTAACATAATATATGTCTCTAAGCTTTAAGAAGAGGAGTTGACAATGCTTTTGGTGTACTCTATACTGATTCTCTATAGATGAATCTATGTAATAAGATGTGGCATTCTTAGGGTTTTCTAAAATTATTGCATCCTCTATATAATGTATATGTTTGATTCATATGATTCTATTTAGTTTCAGATTTCAAGTTGATCATTTTGTCATTTTAAAATTAGAATATACTCCCTCCTATTCTTTGTTGTGTTCCTCTATGCTCAAATTCCTAGAAATCCAGTCACTTACCAAAGTAACCAATAAAAACATGCAGTGGTCAAGATGCAAGTATGAATGCCTTGCCTCCAACTGCATCCATGCATGAATTGATAATAAGTATCTTGTAGAGGAGCATTACTGTATCAGAGAAACATAACAAAGCTAGGTGCTTTCGAAATTACATGCATCATGCATGCAACGGCCATTCCTGAGTATCAGGAAATTAATTTTACAGCACTGTTCAACGAAAGAAGTAGAATGGTATATACTTACATGAAAACCAGTGCAATACACAGGAGGTAGCTACCTATATCATAAGTGGCAGGTGGTGATGTGCTCCAAAACCTTAGCGTAATGTTGAGAGTAGGCTATTGTTTATCCTATTAGCATTTAGAATACTGATTGGTGTTTGCTGAAATTTGTATAACTGGTATTCCTAAGGTGCAGTGGACCAATCGTTTTGTAAAGTATTTTAAATAGTTTCCAACAAATTAGTAAATTTACACTGCATTCAAATTTATTTGATTTTTTTAAGTTTTCTTGGGGTCATTTAGTGGAAGTGTACTATCTTTATTTTTATAAGGTAATTGCACTTTGCATATAAGTAACATTGCTCCTCCTTGGTGCATCCATCCGAAAATTCAAAACAATGCTTCTTGAAATGAATGAAGGAAGCAAATCTTTTTTGTTTCGTACAAAATGCTGATACATATGTCTATCTGCGCTAGTAAAGTCCTCAATTATTACATTTAACCACCTAAATTTGCTCTCCTTACCCCCAGACATTTTCTATAGGAAAAACTAAAAACTTGAATGAAATGCAGCTGTATATCAGTATATGTTCTGCAACAATGCTATTCTATTCATGCAAACATCCTTCATCCTTGCAGCTTCTGTATGGTACAGACTGTGTTCTGGCTAATTTAACATTCCATATGACTTAACCAGTTAAGATACTTTACATTCTTAGTATTTTTATAACTCTTGTAAATTAACAGCTTCTTGGGCTAGTGGAGTTCAAACTAAAGGAAGCAATCTCAAAAGAGCCGACACTTCTTGTTATGGTTGTTGGTGTTCCCAATGTTGGCAAGTCTGCCCTCATAAATTCCATTCATAGAATTGTCACTTCTCGTTTTCCAGGTATAATATTTACAGAGTAAAATATCTATGCATCTAATTTATGATTGACTATTCATGTTTGTTGTTTCTCTACTCCCAGTGCAAGATAAGAACAAGCGAGCTACAGTAGGACCATTGCCTGGTGTTACTCAAGATATTGCAGGATATAAGGTGAGTCTGTAAGTCCAATATTTTCTCAACATCTCTTAGTTTGCTAGATTGATGAATCCAGTCCGTCGGTAATATTGAACTAGATATGAGAAATATTCATGATAGCACATGTTAATCTGACGTTTTTCAGTTGTATTATTCTATCCCACATGTGTTATATCTGCGTTTTGTTTTGCTTGTTGCTCTTTAATTTTCATATTAAATACTAGATGTGACAAAATGAATGGATGAGGCTCAAGTCCATGGATATGGATGGTAACAAGCTTAGACTCTTTTCCCTTTCTTTGTCTGAAAATATATTAAGTTTCCACAATTCACGTTACAATATAGTTAGGCCTTTCTTGTTCAGTCCTATGTTAGGATAATAGGTATTAACTGTGGAAGAGTACAGGAAAAATGAGGCTTAAGAGATAAAGATTACCTTTGTTTGATCCAAAATTTACCTCCTGAATCAGTTTGCCTACAAATTAAACACATCCCACACCACAGGCCACTTAGACCCACTTAAGCTGCCATATCCAGTTCAGCATATCTCATGTCCAGCCTTATTACGGTTCCAATCCATTTCCTGTTGCCATCTACCCTGACTCCGTTCTTTTGTGCACCATCAGTTTGCTTAGTTTGCAATTACATGGTTCAAGTAAATGCATTCATAGTGACTAATCATTGATCAGATGGTTTCTTTTTTTCTTGTTTTCTTTTTGCTATAATCGAGTGGATTAACAGCAATACTTGTGTCGGATAGATTTCAAGCCAGCCGAGCATTTATGTACTTGATACACCAGGTGTTCTAGTACCAAGCATTCCAGACATGGAGACTGGTTTAAAGCTTGCTCTGACAGGTTAGATTATTTTAGCTTCTGTATTTTCTCTTCTGTGCACGAATTCATCTGAAGAATAAGAATATTATCGTGTTCTCTGCTTAGAGAACTTATCCATATTTGATAAACACAAGATTAATCATGGTTTACTCTTGTTTTACCTATCACTGATATCAAGTTGTCCATACTTGTACTGCCACATTGCTAGAGCCCTTTTTATATTATTTACAGGAGCCGTCAAGGACTCTGTGGTTGGAGAGGAGCGTATAGCGAAATATTTATTGTCTCTTCTTAATATTAGAAAAACCCCTCTACATTGGGAGCGACTAGTTTACCGAAGAGAACAATTCAATGAAGAGGCATTCAATAGTAATGAAAAAGACTATAGAGATTCACCACGAAGGAGGAGGCGACCAAATAACTCTGACGCCTTATATGTACAGGTACCAACTCTAATCAGAAAGTTTACTGCATTGGAAACCATCGTTATGGGGATATAACTGGGCAACATAATCGGAACTCCCCATGTATACATATGATGAAATTTGGATGGAATAAATTTATCCAGGCTTGGCGACCACATTGATCAATATTTTGCAGATTATACCACAAAATAAATAATCATATATGAGTGATCTCACCATCTGGATCCGTTTCAAAATCTGATGCAGCCAAAGATCATAAAATTGCATCCGAGTATACAGCTAGCTTTTATAAGTTGCAGAATAACATGCAATGTTTGATATTACTAACCTGTTATATGTACAATTATCTCACTGTTTTTTCCCCTTTATTAAATGAAGGCATCAATTGACTACTAAATGGATTAAGCATTATGTAACATTTGATCAATCCTTATAACACTAACTGTCCATCCAGTGGTTTTACGGTGCATTTTCTCTTTTCCTCTTGAGGTTGAATGGCTGCCCTTCAGAAAGGGCGTGTTAAATGAAATTTAAGAATCACATATCATTCTACCATGTTGTGGTTAGAGGTTTGCTGAAAAATTGTGTTTTCATGCTTAGATCTCAAAACATTATGCAGTTATGATTATAGAAGTCCAATGGTAACTTATCCCTTGCTAATAATGTTTTCTTGCCATGGAGTGTCTTATTTTTGCTGGTGTTCATGTTGCTATACACTGGGATATGCTAGTTTGTTGGCTTTTAAGTAGCAGATCATTCAGAATTCTGGCTTAGTATCTCGCAAAACATGTTGGAACAACCAGGTAGATAATAATCTGTTTTTTCCTATATTATATATTTATATTATTACCGTTCAGAAGGTGGTGAAAAAAAATGTTCTCGTTCTTTTTTTCATTAAGTTGTGCTCCTTAAATATTATATTTTTGTTGATCAATTTTCAGTATTTCATTGTCATGTCAAACCCATCATCTCAGAATATGTAGAGCAATATCTATATTTATATTTTTAGTGCAAATTTGTTTATTTTACTATAGCTGTCATCGAGCAACGTCATTTAGTTGGGAAATTTCATGTGTTCCGTGTAGCACAGGAGCACTTGAGCTTCAAACCAACAAAAATAGTGTGCACATATTTATAAAAATATCTACGAAAAAGTAGCATACAGTATGTCGTTATCCATTACTCTGTAAAATTTCAAATTGAAATTTGAACATGGAGTAAAATTAACATAAACTCTGCTGAAAAAGGCATTGGAAATAAAAATTATTACTGTCAGAAGAATGTCTTTTTTTATTTCTCCAAGTGTACATCAAATCTAGATTTGAACTTGTGTGGAGTGATGGATGACAACACATTTTAAATTTATTCAGAATTTGCTATGACTGTTGGGATGTGTTTTTGTTGGTTTTAAGCTCAGGTGCTATTCTGCTCCATGCAGCACCTGAAACTTTCAACCAAAAAAAAAACAATATTACCTTAGCGTTGATACAATATGTTTCTCCAATATTATCAGTGGAGAAAGAGTGTATTCAGTTTTGCAACATGTTTCCATTGGTGTAGAGTTGTACGCGCTTTAGTTCAACCCTTGGCTTATAGGAGACATTAATGGTGGTTGAGATTTGAGAAAAGGCACATCATCAGCTAGCAGCCTGTTCTTGTTGGGCTGGAGTACTTATATGGACATGTTAACCTCAATGTTGTTTGTCACACACACACATTGGGCCACTCTGCCTGTGTGGCATGTGTAGTTGGTGTATCTTACAGAAACATTGGGGTGGCTGGTGGGATTATGGTTGTAAGCTTGTATGATCATGCTACTTTTGGGTTGTCTTTGGCACCGTGGACCATGGAAAGCATCCCCTGGATAGACTTGATGCCATGTGTGGTTGGTGACACCATGTGATTATGTCCAATGGTTAGATCTGTCCATTATTATTTTAATGTAGTTGAACAATTAACATGGTACGTCTGTTGACTTGCCAATCGCTCATGTTTGATATATTTTCTTTTGTGGGATCGTGTTTTTAGTATATATTCTCCTTATGACATTATTGACTGACTGCATTTCAAGATTGCCATGTGCGCTAAACTTCCTAGTTAACTCTTACCGTTATTTTCTGTCATGTCATGAACTTGTTGCATTACAATAGGCCGTTCTATGTACATTTAATCAGAAAACCAAATTTGTGCAACTATTTGTAAGGTACAGATTGTACCTTCGCACCTAATTGTGCTGCCCATCGTACTGTGGCAATTAATGAGTTCTCTTATCTATTTTGTACAAGTTCATAAACCTCGCCCCTCTTCTCCAGGACATGGTGATGGAGGTCCAGAGAACACTTTGCAGTACATTTATGGACTTCGCGGACAACACTGAGGATGAGAACGAGCTTGAAAGCCTGATAGACTCACAGCTTGTCGCTCTTCGCAAGGTGTTCAGGATACCTCACAAACCGTTTGATGAAACGCATGGTCCGGCCTCCAAGAAGTTGTTGACTCTTTTCAGATCAGGGAAGCTTGGCCCTTTCATCCTCGACGACCTTCCAGATAATCAGTAA</dnaseqindica>

External Link(s)

EnsemblPlants:BGIOSGA001562