BGIOSGA001718

From RiceWiki
Revision as of 10:25, 26 June 2012 by 127.0.0.1 (talk) (Created page with "{{IndicaGene| GeneName = BGIOSGA001718| Description = Putative uncharacterized protein| Definition = Oryza sativa Indica Group BGIOSGA001718, complete gene.| tag = OsI_017...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

BGIOSGA001718

Description

Putative uncharacterized protein

Definition

Oryza sativa Indica Group BGIOSGA001718, complete gene.

LocusTag

OsI_01776

Ensembl Transcript ID

BGIOSGA001718-TA

Ensembl Protein ID

BGIOSGA001718-PA

Length

4085

Source

Oryza sativa Indica Group

 ORGANISM  Oryza sativa Indica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:14887002..14891086

Sequence Coding Region

14888773..14891086,14887486..14887611,14887002..14887378

Genome Context

<gbrowseImage1> name=IndicaChromosome01:14887002..14891086 source=RiceIndica01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=IndicaChromosome01:14887002..14891086 source=RiceIndica01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>ATGATATCACTCCCATTATTGCTCTTCGTCCTGTTGTTCTCTGCGCTGCTGCTCTGCCCTTCAAGCAGTGACGACGATGGTGATGCTGCCGGCGACGAACTCGCGCTGCTCTCTTTCAAGTCATCCCTGCTATACCAGGGGGGCCAGTCGCTGGCATCTTGGAACACGTCCGGCCACGGCCAGCACTGCACATGGGTGGGTGTTGTGTGCGGCCGCCGGCACCCGCACAGGGTGGTGAAGCTGCGGCTGCGCTCGTCCAACCTGACCGGGATCATCTCGCCGTCGCTGGGCAACCTATCCTTCCTCAGGACGCTGCAACTCAGCAACAACCACCTGTCCGGCAAGATACCCCAGGAGCTCAGCCGTCTCAGCAGGCTCCAGCAACTGGTACTGAATTTCAACAGCCTATCGGGTGAGATTCCAGCTGCTTTGGGCAATCTAACCAGTCTCTCGGTTCTTGAGCTGACTAACAATACACTGTCTGGAGCAGTCCCTTCATCTCTGGGCAAACTCACCGGCCTCACTGATCTTGCACTGGCTGAAAATATGCTGTCTGGTTCCATCCCATCATCTTTCGGCCAATTGCGCAGATTATCTTTCCTTAGCTTAGCCTTTAACAATTTAAGTGGAGCGATCCCAGATCCTATTTGGAACATCTCCTCTCTCACCATATTTGAGGTCATATCCAACAAGCTAAATGGTACACTGCCTACAAATGCATTCAGTAATCTTCCTAGTCTGAAGGAGGTATACATGTATTACAACCAGTTTCATGGTTGTATCCCGGCATCGATAGGTAATGCTTCCAACATCTCAATATTTACCATTGGTTTAAACTCCTTTAGCGGTGTTGTTCCACCGGAGATTGGAAGGCTGAGAAATCTTCAGAGGCTAGAGCTTGGAGAAACTCTTCTAGAATCTAAAGAACCAAACGATTGGAAATTCATGACGGCATTGACGAATTGCTCCAATCTTCAAGAAGTAGAATTGGGACTTTGTAAATTTGGTGGAGTCATTCCTGATTCTGTTTCCAATCTTTCCTCTTCCCTATTTTATCTCTCCTTTTTCGATAACACAATTTCAGGGAGCTTACCTAAGGATATCGGTAATCTCGTTAATTTAGAAACTCTTTCTCTCGCTAACAACTCCTTGACAGGATCCCTTCCCTCTTCCTTCAGCAAGCTTAAAAATTTACATCGTCTCAAACTTTTTAACAACAAAATAAGTGGTTCTCTCCCATTAACCATTGGTAATCTTACACAACTAACTAATATGGAGCTCCACTTTAATGCCTTCGGTGGTACAATACCAGGCACACTTGGAAACCTGACCAAGTTGTTTCAAATAAATCTTGGCCATAATAACTTTATAGGTCAAATTCCCATTGAAATATTTAGCATTCCTGCACTCTCTGAAAATTTGGATGTGTCTCATAATAACTTGGAGGGATCAATACCAAAAGAAATAGGGAAACTTAAAAATATTGTCGAATTCCGTGCTGATTCGAACAAATTATCGGGTGAGATCCCTAGCACCATTGGTGAATGCCAACTTCTGCAGCATCTTTTCCTGCAAAACAATTTCTTAAATGGTAGCATCCCAATAGCTCTGACTCAGTTGAAAGGTCTGGACACACTTGATCTCTCAGGTAACAATTTGTCAGATCAGATACCTATGTCCTTAGGGGACATGCCTCTGCTCCACTCGCTGAACCTTTCGTTCAACAGCTTCCACGGTGAAGTGCCAACCAATGGTGTTTTTGCAAATGCTTCTGAAATTTACATCCAAGGCAATGACCATATTTGCGGTGGCATACCTGAACTACATCTTCCGACGTGTTCCTTAAAATCAAGAAAGAAAAAGAAACATCAAATTCTGCTGTTAGTGGTTGTTATCTGTCTCGTTTCGACACTTGCCGTATTTTCGCTACTCTACATGCTTCTAACCTGTCATAAGAGAATAAAGAAAGAAGTCCCTACAACGACATCCATGCAAGGCCACCCAATGATCACTTATAAGCAGCTGGTAAAAGCAACAGATGGTTTTTCGTCAACCAATTTGGTGGGCTCTGGATCGTTTGGCTCTGTTTACAGAGGAGAATTTGATAGCCAAGATGGTGAAAGCCCAAGACTTGTCGCCGTGAAGGTACTAAAGCTGGAAACTCCAAAGGCACTCAAGAGTTTCACGGCCGAATGCGAAACACTGCGAAACACTCGACACCGGAATCTTGTCAAGATAGTTACAATTTGCTCGAGCATCGATAACAGAGGAAATGATTTCAAAGCAATTGTGTATGACTTCATGCCCAATGGCAATGCTGATATGGTAGCCCATGTTGGAGACTTTGGACTTGCAAGAATACTTATTGAGGGAAGCTCATTGATGCAACAGTCAACAAGTTCGATGGGGATAAGGGGAACAATTGGTTACGCAGCACCAGAGTATGGTGTCGGGAACACTGCCTCGACACCTGGAGATATTTACAGTTATGGAATTCTAGTGTTGGAAACAGTAACCGGGAAGCGGCCGACAGATAGTACATTCAGAACTGGATTGAGCCTCCGTCAGTACGTTGAACCGGGTCTACATTGTAGACTAATGGATGTTGTTGACAGGAAGCTTGGTTTGGATTCCGAGAAATGGCTTCAGGCTCGAGATGTTTCGCCATGCAGCAGTATTAGTGAATGCCTTGTTTCACTGCTTAGACTTGGGTTGTCTTGCTCTCAGGAATTGCCATCGAGTAGAATGCAAGCTGGAGATGTCATCAATGAACTGCGTGCCATCAAAGAGTCTCTCTCGATGTCATCCGACATGTGA</cdnaseq>

Protein Sequence

<aaseq>MISLPLLLFVLLFSALLLCPSSSDDDGDAAGDELALLSFKSSLLYQGGQSLASWNTSGHGQHCTWVGVVCGRRHPHRVVKLRLRSSNLTGIISPSLGNLSFLRTLQLSNNHLSGKIPQELSRLSRLQQLVLNFNSLSGEIPAALGNLTSLSVLELTNNTLSGAVPSSLGKLTGLTDLALAENMLSGSIPSSFGQLRRLSFLSLAFNNLSGAIPDPIWNISSLTIFEVISNKLNGTLPTNAFSNLPSLKEVYMYYNQFHGCIPASIGNASNISIFTIGLNSFSGVVPPEIGRLRNLQRLELGETLLESKEPNDWKFMTALTNCSNLQEVELGLCKFGGVIPDSVSNLSSSLFYLSFFDNTISGSLPKDIGNLVNLETLSLANNSLTGSLPSSFSKLKNLHRLKLFNNKISGSLPLTIGNLTQLTNMELHFNAFGGTIPGTLGNLTKLFQINLGHNNFIGQIPIEIFSIPALSENLDVSHNNLEGSIPKEIGKLKNIVEFRADSNKLSGEIPSTIGECQLLQHLFLQNNFLNGSIPIALTQLKGLDTLDLSGNNLSDQIPMSLGDMPLLHSLNLSFNSFHGEVPTNGVFANASEIYIQGNDHICGGIPELHLPTCSLKSRKKKKHQILLLVVVICLVSTLAVFSLLYMLLTCHKRIKKEVPTTTSMQGHPMITYKQLVKATDGFSSTNLVGSGSFGSVYRGEFDSQDGESPRLVAVKVLKLETPKALKSFTAECETLRNTRHRNLVKIVTICSSIDNRGNDFKAIVYDFMPNGNADMVAHVGDFGLARILIEGSSLMQQSTSSMGIRGTIGYAAPEYGVGNTASTPGDIYSYGILVLETVTGKRPTDSTFRTGLSLRQYVEPGLHCRLMDVVDRKLGLDSEKWLQARDVSPCSSISECLVSLLRLGLSCSQELPSSRMQAGDVINELRAIKESLSMSSDM</aaseq>

Gene Sequence

<dnaseqindica>1..2314#3476..3601#3709..4085#ATGATATCACTCCCATTATTGCTCTTCGTCCTGTTGTTCTCTGCGCTGCTGCTCTGCCCTTCAAGCAGTGACGACGATGGTGATGCTGCCGGCGACGAACTCGCGCTGCTCTCTTTCAAGTCATCCCTGCTATACCAGGGGGGCCAGTCGCTGGCATCTTGGAACACGTCCGGCCACGGCCAGCACTGCACATGGGTGGGTGTTGTGTGCGGCCGCCGGCACCCGCACAGGGTGGTGAAGCTGCGGCTGCGCTCGTCCAACCTGACCGGGATCATCTCGCCGTCGCTGGGCAACCTATCCTTCCTCAGGACGCTGCAACTCAGCAACAACCACCTGTCCGGCAAGATACCCCAGGAGCTCAGCCGTCTCAGCAGGCTCCAGCAACTGGTACTGAATTTCAACAGCCTATCGGGTGAGATTCCAGCTGCTTTGGGCAATCTAACCAGTCTCTCGGTTCTTGAGCTGACTAACAATACACTGTCTGGAGCAGTCCCTTCATCTCTGGGCAAACTCACCGGCCTCACTGATCTTGCACTGGCTGAAAATATGCTGTCTGGTTCCATCCCATCATCTTTCGGCCAATTGCGCAGATTATCTTTCCTTAGCTTAGCCTTTAACAATTTAAGTGGAGCGATCCCAGATCCTATTTGGAACATCTCCTCTCTCACCATATTTGAGGTCATATCCAACAAGCTAAATGGTACACTGCCTACAAATGCATTCAGTAATCTTCCTAGTCTGAAGGAGGTATACATGTATTACAACCAGTTTCATGGTTGTATCCCGGCATCGATAGGTAATGCTTCCAACATCTCAATATTTACCATTGGTTTAAACTCCTTTAGCGGTGTTGTTCCACCGGAGATTGGAAGGCTGAGAAATCTTCAGAGGCTAGAGCTTGGAGAAACTCTTCTAGAATCTAAAGAACCAAACGATTGGAAATTCATGACGGCATTGACGAATTGCTCCAATCTTCAAGAAGTAGAATTGGGACTTTGTAAATTTGGTGGAGTCATTCCTGATTCTGTTTCCAATCTTTCCTCTTCCCTATTTTATCTCTCCTTTTTCGATAACACAATTTCAGGGAGCTTACCTAAGGATATCGGTAATCTCGTTAATTTAGAAACTCTTTCTCTCGCTAACAACTCCTTGACAGGATCCCTTCCCTCTTCCTTCAGCAAGCTTAAAAATTTACATCGTCTCAAACTTTTTAACAACAAAATAAGTGGTTCTCTCCCATTAACCATTGGTAATCTTACACAACTAACTAATATGGAGCTCCACTTTAATGCCTTCGGTGGTACAATACCAGGCACACTTGGAAACCTGACCAAGTTGTTTCAAATAAATCTTGGCCATAATAACTTTATAGGTCAAATTCCCATTGAAATATTTAGCATTCCTGCACTCTCTGAAAATTTGGATGTGTCTCATAATAACTTGGAGGGATCAATACCAAAAGAAATAGGGAAACTTAAAAATATTGTCGAATTCCGTGCTGATTCGAACAAATTATCGGGTGAGATCCCTAGCACCATTGGTGAATGCCAACTTCTGCAGCATCTTTTCCTGCAAAACAATTTCTTAAATGGTAGCATCCCAATAGCTCTGACTCAGTTGAAAGGTCTGGACACACTTGATCTCTCAGGTAACAATTTGTCAGATCAGATACCTATGTCCTTAGGGGACATGCCTCTGCTCCACTCGCTGAACCTTTCGTTCAACAGCTTCCACGGTGAAGTGCCAACCAATGGTGTTTTTGCAAATGCTTCTGAAATTTACATCCAAGGCAATGACCATATTTGCGGTGGCATACCTGAACTACATCTTCCGACGTGTTCCTTAAAATCAAGAAAGAAAAAGAAACATCAAATTCTGCTGTTAGTGGTTGTTATCTGTCTCGTTTCGACACTTGCCGTATTTTCGCTACTCTACATGCTTCTAACCTGTCATAAGAGAATAAAGAAAGAAGTCCCTACAACGACATCCATGCAAGGCCACCCAATGATCACTTATAAGCAGCTGGTAAAAGCAACAGATGGTTTTTCGTCAACCAATTTGGTGGGCTCTGGATCGTTTGGCTCTGTTTACAGAGGAGAATTTGATAGCCAAGATGGTGAAAGCCCAAGACTTGTCGCCGTGAAGGTACTAAAGCTGGAAACTCCAAAGGCACTCAAGAGTTTCACGGCCGAATGCGAAACACTGCGAAACACTCGACACCGGAATCTTGTCAAGATAGTTACAATTTGCTCGAGCATCGATAACAGAGGAAATGATTTCAAAGCAATTGTGTATGACTTCATGCCCAATGGCAGTCTGGAAGATTGGCTACACCCTGAAACAAATGATCAAGCAGAGCAAAGGCACTTGACTCTGTTGGAAATATAGTCATTATTCGGCATATTTTAATCCAAGAAATTGAAACAATGATCATGGCATAAGTAGTGTAGGGTGATCTTAACATAACCAATAGCATACTATGCGCATCATGAATGTCAGAAACAGGAACATACCAGTAATGCGATAACAGGCTAGAGGCATCATGTAGGACAGGAACAAGAACATAGCGCACACAGTATAGCGCTAACAATGGGAACAGGAGTAGCGCTAACAGCAGTAGTAGGAGGAGAAGATTATACCCCGAGAATGGCCCTCCGCTGGATGGTGAGGCAGAATTGCCTCCGTTGTTGTAGTCGTTCACGGCACCTCCTCCTGGCGCACCAGCTCCTGTCGGCGGCGGCGCACCACCTCCGCCAGCTCCTGTCGGCGGCGGCGCACCTCCACCAGTAGCGGCGGCGGCAACTCCGGACATGGCGATGAGCAGTCGTGCAGGAGGCACTCCCCAAAAACCTGATCACCCGCCTACCCGGTGCAGATCTCAGGCGAAGGTGTGGTTTCGGAGGCACTGCTTCTTCCAATCTCTCGTGCGCGCAAGAGATCAGAAGCGGAGAAGCGAGAGCAACTCAGGCGCGGAGGAGGAGAAACTAACACCGGGAAGGAAGCCAAGAAATCGGATCAGACTCGCGGCCTCCTTATCTATCAGGAGAAAGAACGTGGACGCGCTGTTGCGGAGGGAATCGTGGGAACGTGGGTTAGTGGCTGCAAAAGGATAGCGACGTGACGCCGCCAGCCACGCCACGCCTCGCCCACGCCCGGCCCGGCCCGGCGCGCGCGCGCGCGCGCGTGTGGCATTCTGACCCCCACCTCAACTGGTCAACAGGGAGCCTCTAATAACTCCCTATTTAGGTTGAGATATTTCTCGCTTAAATCCTGAGGTGGTATTATTATCCTTAACATTTATTATGGGCCTTTGAGATTTAATAGAATAAATTGGGCCTAGCCCAATTATTCTAACAGACTCTGCATCAGAGAGTGACCATACTACTTGATGTTGCCTGTGCATTGGACTATCTTCACCGCCATGGCCCTGAACCTGTTGTACACTGCGATATTAAATCAAGCAATGTGCTGTTAGATGCTGATATGGTAGCCCATGTTGGAGACTTTGGACTTGCAAGAATACTTATTGAGGGAAGCTCATTGATGCAACAGTCAACAAGTTCGATGGGGATAAGGGGAACAATTGGTTACGCAGCACCAGGTTAAGTCTAAACTGTTTATGTCTACTTCCTATAATCTTTTCTTTTTTGAGGTTTCTTCTCTCTAGTGTTTTATGACTATGAAATATTTTTTGCTACTGGAAAACAGAGTATGGTGTCGGGAACACTGCCTCGACACCTGGAGATATTTACAGTTATGGAATTCTAGTGTTGGAAACAGTAACCGGGAAGCGGCCGACAGATAGTACATTCAGAACTGGATTGAGCCTCCGTCAGTACGTTGAACCGGGTCTACATTGTAGACTAATGGATGTTGTTGACAGGAAGCTTGGTTTGGATTCCGAGAAATGGCTTCAGGCTCGAGATGTTTCGCCATGCAGCAGTATTAGTGAATGCCTTGTTTCACTGCTTAGACTTGGGTTGTCTTGCTCTCAGGAATTGCCATCGAGTAGAATGCAAGCTGGAGATGTCATCAATGAACTGCGTGCCATCAAAGAGTCTCTCTCGATGTCATCCGACATGTGA</dnaseqindica>

External Link(s)

EnsemblPlants:BGIOSGA001718