BGIOSGA002117

From RiceWiki
Revision as of 10:31, 26 June 2012 by 127.0.0.1 (talk) (Created page with "{{IndicaGene| GeneName = BGIOSGA002117| Description = Putative uncharacterized protein| Definition = Oryza sativa Indica Group BGIOSGA002117, complete gene.| tag = OsI_009...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

BGIOSGA002117

Description

Putative uncharacterized protein

Definition

Oryza sativa Indica Group BGIOSGA002117, complete gene.

LocusTag

OsI_00924

Ensembl Transcript ID

BGIOSGA002117-TA

Ensembl Protein ID

BGIOSGA002117-PA

Length

2494

Source

Oryza sativa Indica Group

 ORGANISM  Oryza sativa Indica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:7016857..7019350

Sequence Coding Region

7019105..7019350,7018775..7018987),complement(7018425..7018625,7018219..7018308),complement(7017965..7018129
,7016857..7017867

Genome Context

<gbrowseImage1> name=IndicaChromosome01:7016857..7019350 source=RiceIndica01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=IndicaChromosome01:7016857..7019350 source=RiceIndica01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>ATGGCCAGGAGAGGAGGAGCAGCAGCATCGTCGTCCATGGCTAATCTCCTCGGCGTCGCCTTGGTGCTCGCCGCCACGGCGCAGACGTTGGCGCGTGGCGGCGGCGGCGGCGGACGCCATGACTACCGCATGGCGCTGAGCAAGAGCATCCTCTACTTCGAGGCGCAGCGCTCCGGCGTGCTCCCCGGTAACCAGAGGATCGCATGGAGGGCCAACTCCGGCCTCGCCGACGGCAAGGCCAACGGCGTGGATCTTGTTGGTGGCTACTACGACGCCGGAGACAACGTCAAGTTCGGGTTCCCGATGGCGTTCACGGTGACCATGATGGCGTGGAGCGTCCTCGAGTACGGGAAGCAGATGGCGGCCGCCGGCGAGCTCGGCCACGCCATGGACGCCGTCAGGTGGGGCGCTGACTACTTCGTCAAGGCGCACCCGGCGCCCAACGTGCTCTACGGCGAGGTTGGAGATGGTGACTCGGACCACGTCTGCTGGCAGCGGCCGGAGGACATGACGACGAGCCGTCAGGCGTATCGCCTTGACCCTCAGCATCCTGGCTCTGACCTCGCCGGAGAAACCGCCGCGGCATTGGCCGCCGCGTCGCTCGTCTTCCATAGCTCCAACCCGGGCTACGCAAACCAACTCCTGCAACACTCCAAGCAGCTGTTTGATTTCGCCGACAAGTACCGGGGAAAGTACGACGACAGCATGCCTGTCGCGAAGAAATTTTACGGGTCATTCAGCGGATACGGGGATGAACTACTGTGGGCATCGGCGTGGCTATACCAGGCGACCGACAACCGCCGCTACCTAGATTACTTGGCCAACAACGGCGACGCTCTCGGCGGGACCGGTTGGGCTACCAACGAATTCGGCTGGGACGTCAAGTACCCCGGAGTGCAAGTCCTAGCTGCAAAGTTTCTCCTGCAAGGGAAGGCCGGGCCGCACGCCGCCGTGCTGCGGAGGTACCAGCGGAACGCCGACGTCTTCGCGTGCTCCTGCCTCGGCAAGGGCGGCGGCGGCGGCGGCAACGTCGGGAGGACGCCCGGCGGCCTGATGTACCACCAGGGCTGGAACAACCTCCAGTTCGTCACCGGCGCGTCGTTCCTGCTGGCCGTCTACGCCGACCACCTCGCCGCCGCCGGCCGCGGGCAAGCCGTCGTGCGGTGCCAGGCCGGGCCGGCGGCGCGGGCGTCGGAGCTCGTCGCGCTGGCCAAGTCGCAGGTGGACTACATCCTGGGTAGCAACCCGAGGGGGATTAGCTACATGGTCGGCTATGGCGCGAGGTACCCGCGGCGCGCGCACCACCGCGGCGCGTCCATCGTCTCCATCAGGGCCAACCCGTCGTTCGTGAGCTGCAAGGATGGGTACGCGAGCTGGTTCGGCCGCGCCGGCAGCAACCCGAACCTGCTCGACGGCGCCGTGGTCGGCGGCCCCGACGGGCGCGACGGCTTCGCCGACGAGAGGAACAACTACCAGCAGACGGAGGTGGCCACCTACAACAACGCGCCGCTCATGGGCGTCCTCGCTCGCCTCGCCGGCGGCGGCCGCGGCGGGCTCGCCGAAGCAGCGATCAAGAGGCCGGACAACCAGACCTTGCTGCCACCTCTCGCAGCTGCGGCGTCGCCGGTGGAGATCACGCAGCTGAACGCGACGGCGTCGTGGAAGAAGGACGGGAGGACGTACCGCCGGTACGCGGCGACGGTGAGCAACAGGTCGCCGGCCGGCGGCAAGACGGTCGAGGAGCTCCACATCGGCATCGGCAAGCCGCACGGCCCGGTGTGGGGGCTCGAGAAGGCGGCGAGGTACGGCTACGTGCTCCCGTCGTCGCTGGCCGCCAGCGAGAGCGCCGCCTTCGCCTACGTTGTCCGCGGCCGCGCCGCGCCGCCGCCGGCTGACGTCTGGGTCATCGGCTACAAGCTCGTCTGA</cdnaseq>

Protein Sequence

<aaseq>MARRGGAAASSSMANLLGVALVLAATAQTLARGGGGGGRHDYRMALSKSILYFEAQRSGVLPGNQRIAWRANSGLADGKANGVDLVGGYYDAGDNVKFGFPMAFTVTMMAWSVLEYGKQMAAAGELGHAMDAVRWGADYFVKAHPAPNVLYGEVGDGDSDHVCWQRPEDMTTSRQAYRLDPQHPGSDLAGETAAALAAASLVFHSSNPGYANQLLQHSKQLFDFADKYRGKYDDSMPVAKKFYGSFSGYGDELLWASAWLYQATDNRRYLDYLANNGDALGGTGWATNEFGWDVKYPGVQVLAAKFLLQGKAGPHAAVLRRYQRNADVFACSCLGKGGGGGGNVGRTPGGLMYHQGWNNLQFVTGASFLLAVYADHLAAAGRGQAVVRCQAGPAARASELVALAKSQVDYILGSNPRGISYMVGYGARYPRRAHHRGASIVSIRANPSFVSCKDGYASWFGRAGSNPNLLDGAVVGGPDGRDGFADERNNYQQTEVATYNNAPLMGVLARLAGGGRGGLAEAAIKRPDNQTLLPPLAAAASPVEITQLNATASWKKDGRTYRRYAATVSNRSPAGGKTVEELHIGIGKPHGPVWGLEKAARYGYVLPSSLAASESAAFAYVVRGRAAPPPADVWVIGYKLV</aaseq>

Gene Sequence

<dnaseqindica>1..246#364..576#726..926#1043..1132#1222..1386#1484..2494#ATGGCCAGGAGAGGAGGAGCAGCAGCATCGTCGTCCATGGCTAATCTCCTCGGCGTCGCCTTGGTGCTCGCCGCCACGGCGCAGACGTTGGCGCGTGGCGGCGGCGGCGGCGGACGCCATGACTACCGCATGGCGCTGAGCAAGAGCATCCTCTACTTCGAGGCGCAGCGCTCCGGCGTGCTCCCCGGTAACCAGAGGATCGCATGGAGGGCCAACTCCGGCCTCGCCGACGGCAAGGCCAACGGCGTACGTGCTCCCGCCATTGTGGCAGCTAGCAAACATGCAATCTTTCTCTGCTCTTGATCTTGATCAGTACGGTTTAATTTGCAAGAACGTGTTCTATTCTACACATCTCCATTTCAGGTGGATCTTGTTGGTGGCTACTACGACGCCGGAGACAACGTCAAGTTCGGGTTCCCGATGGCGTTCACGGTGACCATGATGGCGTGGAGCGTCCTCGAGTACGGGAAGCAGATGGCGGCCGCCGGCGAGCTCGGCCACGCCATGGACGCCGTCAGGTGGGGCGCTGACTACTTCGTCAAGGCGCACCCGGCGCCCAACGTGCTCTACGGCGAGGTCGGCCGGCGACCATCCATCCATGAATTCCTTTTGATTTGTCTCGATTCGTGTGCATAAATGTAGTGGTTTTACTTTTTTATATGACCTGTAGTAGCAGCACACATTTTTGGAGTGTTGTACATGAATTGTTTGCTTCCATTCTGCAGGTTGGAGATGGTGACTCGGACCACGTCTGCTGGCAGCGGCCGGAGGACATGACGACGAGCCGTCAGGCGTATCGCCTTGACCCTCAGCATCCTGGCTCTGACCTCGCCGGAGAAACCGCCGCGGCATTGGCCGCCGCGTCGCTCGTCTTCCATAGCTCCAACCCGGGCTACGCAAACCAACTCCTGCAACACTCCAAGCAGGTATCTTCAATTCGAATTTAAACCGACATGACTAAACCAACAACAACAACAAAAAATATTCACAAGATTAGTTTGAACTATTGCTGAAATATACCTAAATTTCTTCATGTGCCCAGCTGTTTGATTTCGCCGACAAGTACCGGGGAAAGTACGACGACAGCATGCCTGTCGCGAAGAAATTTTACGGGTCATTCAGCGGATACGGGGTATGTTTCCGACAAAATGAATAACCACGTTCTTGAGAACCGGCCATATCTTCGTCATCCGATGACGATATCCGATGTATGCGCTTCAGGATGAACTACTGTGGGCATCGGCGTGGCTATACCAGGCGACCGACAACCGCCGCTACCTAGATTACTTGGCCAACAACGGCGACGCTCTCGGCGGGACCGGTTGGGCTACCAACGAATTCGGCTGGGACGTCAAGTACCCCGGAGTGCAAGTCCTAGCTGCAAAGGTCTGAAATGCTACAGTGATTACCACATTTTGTCGGATACAAGAGTAGTACTACTCACCCCAACACTGTACTTATACTTACATTCCTTTTGATGTAGTTTCTCCTGCAAGGGAAGGCCGGGCCGCACGCCGCCGTGCTGCGGAGGTACCAGCGGAACGCCGACGTCTTCGCGTGCTCCTGCCTCGGCAAGGGCGGCGGCGGCGGCGGCAACGTCGGGAGGACGCCCGGCGGCCTGATGTACCACCAGGGCTGGAACAACCTCCAGTTCGTCACCGGCGCGTCGTTCCTGCTGGCCGTCTACGCCGACCACCTCGCCGCCGCCGGCCGCGGGCAAGCCGTCGTGCGGTGCCAGGCCGGGCCGGCGGCGCGGGCGTCGGAGCTCGTCGCGCTGGCCAAGTCGCAGGTGGACTACATCCTGGGTAGCAACCCGAGGGGGATTAGCTACATGGTCGGCTATGGCGCGAGGTACCCGCGGCGCGCGCACCACCGCGGCGCGTCCATCGTCTCCATCAGGGCCAACCCGTCGTTCGTGAGCTGCAAGGATGGGTACGCGAGCTGGTTCGGCCGCGCCGGCAGCAACCCGAACCTGCTCGACGGCGCCGTGGTCGGCGGCCCCGACGGGCGCGACGGCTTCGCCGACGAGAGGAACAACTACCAGCAGACGGAGGTGGCCACCTACAACAACGCGCCGCTCATGGGCGTCCTCGCTCGCCTCGCCGGCGGCGGCCGCGGCGGGCTCGCCGAAGCAGCGATCAAGAGGCCGGACAACCAGACCTTGCTGCCACCTCTCGCAGCTGCGGCGTCGCCGGTGGAGATCACGCAGCTGAACGCGACGGCGTCGTGGAAGAAGGACGGGAGGACGTACCGCCGGTACGCGGCGACGGTGAGCAACAGGTCGCCGGCCGGCGGCAAGACGGTCGAGGAGCTCCACATCGGCATCGGCAAGCCGCACGGCCCGGTGTGGGGGCTCGAGAAGGCGGCGAGGTACGGCTACGTGCTCCCGTCGTCGCTGGCCGCCAGCGAGAGCGCCGCCTTCGCCTACGTTGTCCGCGGCCGCGCCGCGCCGCCGCCGGCTGACGTCTGGGTCATCGGCTACAAGCTCGTCTGA</dnaseqindica>

External Link(s)

EnsemblPlants:BGIOSGA002117