BGIOSGA002328

From RiceWiki
Revision as of 10:34, 26 June 2012 by 127.0.0.1 (talk) (Created page with "{{IndicaGene| GeneName = BGIOSGA002328| Description = Putative uncharacterized protein| Definition = Oryza sativa Indica Group BGIOSGA002328, complete gene.| tag = OsI_005...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

BGIOSGA002328

Description

Putative uncharacterized protein

Definition

Oryza sativa Indica Group BGIOSGA002328, complete gene.

LocusTag

OsI_00528

Ensembl Transcript ID

BGIOSGA002328-TA

Ensembl Protein ID

BGIOSGA002328-PA

Length

2720

Source

Oryza sativa Indica Group

 ORGANISM  Oryza sativa Indica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:3758079..3760798

Sequence Coding Region

3760683..3760798,3760205..3760256),complement(3759998..3760077,3759712..3759793),complement(3759552..3759622
,3759395..3759474),complement(3759229..3759326,3758740..3758863),complement(3758556..3758638
,3758410..3758458),complement(3758254..3758321,3758079..3758171

Genome Context

<gbrowseImage1> name=IndicaChromosome01:3758079..3760798 source=RiceIndica01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=IndicaChromosome01:3758079..3760798 source=RiceIndica01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>ATGGCGGCCTCCTCCACTGCTACCCGCCTCTCGCCGCCTCGCCTCCACGCACCCACTACCCCTTCTCCCCATCTCCCGCTTCGCCGCTCGCGCTTCTCCCCTCTTCGCGCCGCCAAGTTGGAAGCTGTGTTATCTATTGGAACTCATCTAATACCACACCCAAGAAAGGCTGAGACTGGCGGAGAAGATGCTTTCTTTGTGAACGGCGATGATGGTGGAGTGTTTGCCGTCGCAGATGGAGTTTCAGGATGGGCAGAAAAGGATGTCAATCCGGCTCTGTTTTCTCGAGAGCTCATGGCACACACTTCTACTTTTCTCAAGGATGATGAGGTCAATCATGATCCTCAGCTTCTTCTAATGAAGGCTCATGCTGCAACAACTTCTGTTGGATCTGCAACTGTAATCATTGCAATGCTTGAGAAGACAGGGATTCTAAAAATTGCAAGTGTGGGAGATTGTGGTTTGAAAGTAATTAGAAAAGGCCAAGTAATGTTCTCTACATGTCCTCAAGAACATTACTTTGACTGCCCATACCAGTTAAGCTCTGAAGCAATTGGTCAAACGTATCTGGATGCACTGGTTTGCACAGTAAATCTTATGGAGGGTGATATGATTGTCAGTGGCTCAGATGGATTTTTTGACAATATATTCGATCAAGAGATCGTTTCTGTCATTTCCGAGTCTCCAGGGGTAGATGAAGCTGCAAAAGCACTAGCAGAGCTTGCAAGGAAGCATTCGGTGGATGTCACCTTTGATTCACCCTACTCAATGGAGGCTCGGAGTCGGGGTTTTGATGTCCCCTCGTGGAAAAAGTTCATTGGAGGGAAACTAATAGGTGGTAAGATGGATGACATTACGGTTATTGTCGCACAGGTGAAGGCAGTGATGATCCCAGATGATGAGGGTGTTGACGAAGAAAAGGGTCAAGGGGATGAGCAAGGCAGTGCTGTTGCCGTTGCATCCTCTGAACAGAAGGAAGACTCAATTACCACATAA</cdnaseq>

Protein Sequence

<aaseq>MAASSTATRLSPPRLHAPTTPSPHLPLRRSRFSPLRAAKLEAVLSIGTHLIPHPRKAETGGEDAFFVNGDDGGVFAVADGVSGWAEKDVNPALFSRELMAHTSTFLKDDEVNHDPQLLLMKAHAATTSVGSATVIIAMLEKTGILKIASVGDCGLKVIRKGQVMFSTCPQEHYFDCPYQLSSEAIGQTYLDALVCTVNLMEGDMIVSGSDGFFDNIFDQEIVSVISESPGVDEAAKALAELARKHSVDVTFDSPYSMEARSRGFDVPSWKKFIGGKLIGGKMDDITVIVAQVKAVMIPDDEGVDEEKGQGDEQGSAVAVASSEQKEDSITT</aaseq>

Gene Sequence

<dnaseqindica>1..116#543..594#722..801#1006..1087#1177..1247#1325..1404#1473..1570#1936..2059#2161..2243#2341..2389#2478..2545#2628..2720#ATGGCGGCCTCCTCCACTGCTACCCGCCTCTCGCCGCCTCGCCTCCACGCACCCACTACCCCTTCTCCCCATCTCCCGCTTCGCCGCTCGCGCTTCTCCCCTCTTCGCGCCGCCAAGTATGCCTCCCTGCTTACACCTGTTCGATCCTCTTATCTTTGCCCTTACGATAAGTTTCAGTCCACGAAATGTTCGGTTTTATCGAATTCTCCGGTTCCTAAGACATGCGTTTGATTATCAGTAGTACTTGGGTCAAGGTGCAAATCTTAAGTTGTAATGGAGCAATGTTCTCACTGATAGTTTATTTTTTCACCGGGCCGGCAAAAGAACCGGCCAAGTTTTGTATTAAGAAGGAGAGAGAGTTTTACAACAAGAACACCCTAAGCCAGGAATGGCTTAGGCTACAGAAAATCGTCTCAGCGATTTAGACTACAAACAAACACAGCTGCTAATATATATTTCAGTCTCACTGATAATTTCAGTCTTAAGTTATTTCTAGTGTGCTTCATCTGTCAGTGTTTGGTAATGTGAGCCTGTAATTGTAGGTTGGAAGCTGTGTTATCTATTGGAACTCATCTAATACCACACCCAAGAAAGGTTAGTCATTTTTTAGATAAACATATTAATATATTACTCTTCTGGTAGTGTTTTTTTCCCCTTCATACTCAATTATACAACAGAAGCAACCATTGTTTGATATTTGAATGTTCTTCAAATTCTGAAGGCTGAGACTGGCGGAGAAGATGCTTTCTTTGTGAACGGCGATGATGGTGGAGTGTTTGCCGTCGCAGATGGAGTTTCAGGGTACACCATCTTCGCTGCAATGAATTGTTTTGTACTTTTGTCCCTGAAAAGAACTGCTTCAATAAATTGTAGATTGTGCTTTTGTTTCCTTCCTTTTAATTTTGGGTTGATTTCAGCACTTCTCAAAAAAATACATGGTGTTTTCAGCAATTCGCATTAACACAAGGTTTTTATCCTGCTAGTCATTCTCTTGTCTACTGACAGATGGGCAGAAAAGGATGTCAATCCGGCTCTGTTTTCTCGAGAGCTCATGGCACACACTTCTACTTTTCTCAAGGATGATGAGGTATTTCTTAATTGACATCAGTACTGATATAAAGTCACGTACACTATACGTCAATTTGCATATCAAATAGGAGTTTCTATCCATCACAGGTCAATCATGATCCTCAGCTTCTTCTAATGAAGGCTCATGCTGCAACAACTTCTGTTGGATCTGCAACTGTGTAAGCATATATCTACATTGTTATGTTAGTACAACTTTACAGGTCAAAACCTAATGACTTCTTTGGAACGCTAACAGAATCATTGCAATGCTTGAGAAGACAGGGATTCTAAAAATTGCAAGTGTGGGAGATTGTGGTTTGAAAGTAATTAGAAAAGGTTAGCATGAACAAATTTATAGATTTCTTAAAGTTTATTAGCATACTTATCTGTTCTCTTCTTCCTAGGCCAAGTAATGTTCTCTACATGTCCTCAAGAACATTACTTTGACTGCCCATACCAGTTAAGCTCTGAAGCAATTGGTCAAACGTATCTGGATGCACTGGTATGTGCCTTATTGTAGGTCAGAATAATAGAGCTGTGTGTGTGACGATTGTTTTATTAGCATACTCAGTTCTAGGTGGTTGCCCATATGTTACAACGAGTCCAAGACATGCACATTAATTATTTCTTGATTTGAAAACTCTATATGATCTCAAGTCATGCAGATATTTTGCATGTGTGGACAAATCAAAATTATGGGGAAGATCTTACAAGGGACACGCATGCATGCGCAAATCTATCCATAAAAGATACCACTAATGCAGTAGAAACATAATACCAAGTGCTTCACTACAGTAATCAAGATAGTCGTACAAGATTTAAGCATTATTTGTAGAACCTTCTGATTTTGATCCAGTTGTCTACCAGGTTTGCACAGTAAATCTTATGGAGGGTGATATGATTGTCAGTGGCTCAGATGGATTTTTTGACAATATATTCGATCAAGAGATCGTTTCTGTCATTTCCGAGTCTCCAGGGGTAGATGAAGCTGGTAAGTGGTAAATATCTCAGTTTTGAATTGGGGGCCACCAAACACATGTTCCAGTCCTCCCAAATTCCAATCCTTCTGAAAGTTTGATGTTTTTTCCACAGCAAAAGCACTAGCAGAGCTTGCAAGGAAGCATTCGGTGGATGTCACCTTTGATTCACCCTACTCAATGGAGGCTCGGAGTCGGGTGTGAAACATATACCCCTCAACAATCTTTTCTGTTCAGATTGTTACAGCCAAAAAGGGATGATAGAAATTTCTTCATTCTGATTACTTGAATGCAGGGTTTTGATGTCCCCTCGTGGAAAAAGTTCATTGGAGGGAAACTAATAGGTACGCATGAGCTCATACACATACTATGATGCTCTACTCTATGCAGAACACAAAGTAATCTCATGATGCCTAAATTTCATCCATACAGGTGGTAAGATGGATGACATTACGGTTATTGTCGCACAGGTGAAGGCAGTGATGATCCCAGATGATGAGGTGATCCTACAAAATCTTCCAATCTTGAAATGTAGATAATGTTGTTTCACCTTGGATTCTTACTGTTCAGTGAAATTTGCAGGGTGTTGACGAAGAAAAGGGTCAAGGGGATGAGCAAGGCAGTGCTGTTGCCGTTGCATCCTCTGAACAGAAGGAAGACTCAATTACCACATAA</dnaseqindica>

External Link(s)

EnsemblPlants:BGIOSGA002328