BGIOSGA002329

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Revision as of 10:34, 26 June 2012 by 127.0.0.1 (talk) (Created page with "{{IndicaGene| GeneName = BGIOSGA002329| Description = cDNA clone:J013162N07, full insert sequencecDNA| Definition = Oryza sativa Indica Group BGIOSGA002329, complete gene.|...")
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Gene Name

BGIOSGA002329

Description

cDNA clone:J013162N07, full insert sequencecDNA

Definition

Oryza sativa Indica Group BGIOSGA002329, complete gene.

LocusTag

'

Ensembl Transcript ID

BGIOSGA002329-TA

Ensembl Protein ID

BGIOSGA002329-PA

Length

3182

Source

Oryza sativa Indica Group 

 ORGANISM  Oryza sativa Indica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:3754312..3757493

Sequence Coding Region

3757203..3757493,3756858..3757094),complement(3756500..3756760,3756248..3756327),complement(3756037..3756142
,3755827..3755940),complement(3755648..3755746,3755407..3755496),complement(3755025..3755275
,3754312..3754729

Genome Context

<gbrowseImage1> name=IndicaChromosome01:3754312..3757493 source=RiceIndica01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=IndicaChromosome01:3754312..3757493 source=RiceIndica01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>ATGTCGTCCTCCTCCTCCTCCTCGTTGGCGGCGGCGGCGGCGCGGAAGCGCGCGCTGACGGAGCAGAGGTTCTCGGAGCTGTCTCCCGCGCTGTCCCCGGAGGTGGTGAAGGCCCTGAAGGGCGGCGGGTTCCGGCGGTGCACGCCGGTGCAGGCGGCGGCCATCCCGCTGCTGCTTTCGCACAAGGACGTGGCCGTCGACGCCGCCACCGGCTCCGGCAAGACGCTCGCCTTCGTCGTCCCCGTCGTCGAGATCCTCCGCCGCCGCCCCTCGCCTCCCAAGCCCCACGAGGTTCTTGGAATCATCATCTCCCCGACGAGGGAACTGTCTTCGCAGATATACAATGTGGCTCAGCCGTTCTTCGCGACGCTGAAGGGGGTCTCATCCATGCTACTGGTTGGTGGGTTCGACATCAAGGCGGAGCTAAAGAAACTGGAAGAAGAGGGTGCAAACATACTGGTCGGCACCCCGGGGAAGCTGTTCGACGTAATGGAGCGCTTAGACACTCTGAACTACAAGAATCTTGAGATTTTGATCCTGGATGAAGCTGATAGGCTGTTGGATTTAGGATTCCAGAAGCAGATTACGTCGATTATTTCGAAGTTGCCAAAGCTGAGGAGAACGGGGCTTTTTTCGGCAACTCAGACGGAGGCTGTTAAGGAGCTGGCGAAAGCAGGGTTGAGGAATCCTGTGAGGGTTGAAGTTAAGACAGAGGTGAAGCCCACAAGTAAAGATGGTGCTCAACAAGAGCTTGGTCCATCCAAAACACCGTTGGGTCTTCGATTGGAGTATATGATATGTGAAGCATCAAATAAGTCATCGCAACTTGTTGATTTCCTTGTGCAGAACAATGGAAAGAAAATAATGGTGTACTTCGCAACATGTGCTTGTGTAGATTACTGGGCTATTGTTCTCCCGCTGTTGGACTCACTTAAAGGTTCTCCAATAATTCCTTATCATGGGAAGATGAAGCAGGGCCCTCGTGAGAAAGCTTTGGCATCATTTTCAGCTCTCTCAAGTGGTATTCTAGTTTGCACTGATGTTGCAGCAAGGGGTCTTGACATACCACATGTTGATCTGATTGTGCAGTATGATCCACCTCAAGATCCCAATGTGTTCATACATAGAGCTGGCCGTACTGCACGTTATGATCAAGAAGGAGATGCTATTGTATTCCTCTTACCGAAGGAAGATACTTATGTTGAGTTCTTGAAGAGGAGAGGTGTACCCCTCACTGAAAGGGAGTGTTCCACAAATGCTGTAGATATTGTACCACAGATCAGAAGTGCTGCATTGGAAGACCGAAATGTCATGGAGAAAGGGCTTACAGCTTTTGTTTCGTTTGTTCGGGCATACAAGGAGCACCACTGTTCTTACATTTTCAGTTGGAAAGACCTTGAAATTGGAAGGTTGGGTATGGAGTACGGCTTACTCCAAATTCCATCTATGCCAGAAGTTAAGCACCATTCTCTTTCATTGGAAGGGTTTACTCCTGTTAAAGATGTCGATGCTACAAAAATCAAGTACAAGGATAAAGCTCGAGAAAAACAACGGCAGAAGACATTGAAAAGGAAAGCAGAAGAGCTAGCTCTAAGACCAGAGATAGAGAGGAGGAGGAAAGCCCCGGAGAAGCCTGAAAAGCCAAAGCGGAAGAAAACCGGTAAACAGCGTCAAGCAGTCCAAACCAAGGAGGACATGGATGAGCTCACGAATGAGTACCGGCTTCTGAAGAAGCTGAAGCGGGGGGTGATCGACGAGGACGAGTACGAGAAGCTCACCGGATTCGGGGAATCTGACGACGAAGATTCCTCAGATGGCGGCGACTCTGATCTGGACGAGAGAAAGGAGAGGGGCAACAAGGTGCTCAAGAAAATCAAGCAGAAGGGGAAGGCAAAAGGGTCTAGGAGATTTGAAGGGAGGAGCAAACAGAAGACTAGGAGAAGATGA</cdnaseq>

Protein Sequence

<aaseq>MSSSSSSSLAAAAARKRALTEQRFSELSPALSPEVVKALKGGGFRRCTPVQAAAIPLLLSHKDVAVDAATGSGKTLAFVVPVVEILRRRPSPPKPHEVLGIIISPTRELSSQIYNVAQPFFATLKGVSSMLLVGGFDIKAELKKLEEEGANILVGTPGKLFDVMERLDTLNYKNLEILILDEADRLLDLGFQKQITSIISKLPKLRRTGLFSATQTEAVKELAKAGLRNPVRVEVKTEVKPTSKDGAQQELGPSKTPLGLRLEYMICEASNKSSQLVDFLVQNNGKKIMVYFATCACVDYWAIVLPLLDSLKGSPIIPYHGKMKQGPREKALASFSALSSGILVCTDVAARGLDIPHVDLIVQYDPPQDPNVFIHRAGRTARYDQEGDAIVFLLPKEDTYVEFLKRRGVPLTERECSTNAVDIVPQIRSAALEDRNVMEKGLTAFVSFVRAYKEHHCSYIFSWKDLEIGRLGMEYGLLQIPSMPEVKHHSLSLEGFTPVKDVDATKIKYKDKAREKQRQKTLKRKAEELALRPEIERRRKAPEKPEKPKRKKTGKQRQAVQTKEDMDELTNEYRLLKKLKRGVIDEDEYEKLTGFGESDDEDSSDGGDSDLDERKERGNKVLKKIKQKGKAKGSRRFEGRSKQKTRRR</aaseq>

Gene Sequence

<dnaseqindica>1..291#400..636#734..994#1167..1246#1352..1457#1554..1667#1748..1846#1998..2087#2219..2469#2765..3182#ATGTCGTCCTCCTCCTCCTCCTCGTTGGCGGCGGCGGCGGCGCGGAAGCGCGCGCTGACGGAGCAGAGGTTCTCGGAGCTGTCTCCCGCGCTGTCCCCGGAGGTGGTGAAGGCCCTGAAGGGCGGCGGGTTCCGGCGGTGCACGCCGGTGCAGGCGGCGGCCATCCCGCTGCTGCTTTCGCACAAGGACGTGGCCGTCGACGCCGCCACCGGCTCCGGCAAGACGCTCGCCTTCGTCGTCCCCGTCGTCGAGATCCTCCGCCGCCGCCCCTCGCCTCCCAAGCCCCACGAGGTCTGTGCTCACTGCTCCACGCTGCTGTTCTTGCGTTGCTTGCATAAGTTGCAGGATTGCATCTCATGTTCACTTCTGATCAGAAAAAAGAGTATGGAATTTTGCTAGGTTCTTGGAATCATCATCTCCCCGACGAGGGAACTGTCTTCGCAGATATACAATGTGGCTCAGCCGTTCTTCGCGACGCTGAAGGGGGTCTCATCCATGCTACTGGTTGGTGGGTTCGACATCAAGGCGGAGCTAAAGAAACTGGAAGAAGAGGGTGCAAACATACTGGTCGGCACCCCGGGGAAGCTGTTCGACGTAATGGAGCGCTTAGACACTCTGAACTACAAGAATCTTGAGGTGGTTTTGGAAGCAATTGAAAATTCATGTGTTGTTCTTTTGTGCTTGAAATGCAAATCTGACATAAATTGTTGTTGTGTATGTGTTTTCGAAGCAGATTTTGATCCTGGATGAAGCTGATAGGCTGTTGGATTTAGGATTCCAGAAGCAGATTACGTCGATTATTTCGAAGTTGCCAAAGCTGAGGAGAACGGGGCTTTTTTCGGCAACTCAGACGGAGGCTGTTAAGGAGCTGGCGAAAGCAGGGTTGAGGAATCCTGTGAGGGTTGAAGTTAAGACAGAGGTGAAGCCCACAAGTAAAGATGGTGCTCAACAAGAGCTTGGTCCATCCAAAACACCGTTGGGTCTTCGATTGGAGGTATGGCGAGGAACTTTTGAACAAGCATTTGGATGGTTATTCGTGGCTGCCAATGATTACATGGGCTGGTTGTAACATATACTTATTTTGTTCTACTAGTGACTATGCCTGTTGATTGCCTTATGTACTTGTCAATTTAATGTAAACCACAAAATTTCTTTGTTCTTTGCAGTATATGATATGTGAAGCATCAAATAAGTCATCGCAACTTGTTGATTTCCTTGTGCAGAACAATGGAAAGAAAATAATGGTGTAAGTAGACAGCGAACTAAAATTTGTTTTCACACACTTACCTTAAGTGCCTGGTTGTGTAGCATTGTGCTAGCTTGTGGGCTTTCTGATCTTACTTGAATGCAGGTACTTCGCAACATGTGCTTGTGTAGATTACTGGGCTATTGTTCTCCCGCTGTTGGACTCACTTAAAGGTTCTCCAATAATTCCTTATCATGGGAAGATGAAGCAGGTTACAGAGCTAATACATGCATGATTTGTTGTACATGGCGCTTCCAAAAGCTTTCCTTCATACTGATTGCTACCGCGCTACTTTCCTGGTATGTAGGGCCCTCGTGAGAAAGCTTTGGCATCATTTTCAGCTCTCTCAAGTGGTATTCTAGTTTGCACTGATGTTGCAGCAAGGGGTCTTGACATACCACATGTTGATCTGATTGTGCAGGTAATGCTTTGAACATAACTCCCTAAATTGTTTCCTTGTGCTTGTCATTAGTTGATATAAAACATTTGTTTCTTCCCCAGTATGATCCACCTCAAGATCCCAATGTGTTCATACATAGAGCTGGCCGTACTGCACGTTATGATCAAGAAGGAGATGCTATTGTATTCCTCTTACCGAAGGTACTTGCTCTGCTTTGACATTATCTAAGTGGAAGTCAGTAGTTGAATTTCAAAGACATATTTGGCTATGCATACCATGCACATGCAGTAGTGATTTGATACAATGGATTGCCTTGTTAGTAAAATGCTTAGCGCTATAATTGTTCTGTAGGAAGATACTTATGTTGAGTTCTTGAAGAGGAGAGGTGTACCCCTCACTGAAAGGGAGTGTTCCACAAATGCTGTAGATATTGTACCACAGGTGAGTTTCTTATTGTTATAGATCATCTTAGGTTGTCTGCCTGTGAAGGCATCTGAATCCAGAAATGATTTTTTTTCTTGAGAGAAAAATTTAGTGTTTAAAATAACCAATTACCCACTTGTCTGTCACAGATCAGAAGTGCTGCATTGGAAGACCGAAATGTCATGGAGAAAGGGCTTACAGCTTTTGTTTCGTTTGTTCGGGCATACAAGGAGCACCACTGTTCTTACATTTTCAGTTGGAAAGACCTTGAAATTGGAAGGTTGGGTATGGAGTACGGCTTACTCCAAATTCCATCTATGCCAGAAGTTAAGCACCATTCTCTTTCATTGGAAGGGTTTACTCCTGTTAAAGATGTCGATGCTACAAAAATCAAGTACAAGTAAGCCTGCAAACCTAACATTTCACTCTGTTGCCAATTGTACTATTGCATCAACGCACTACTAATTTGACAAATTTATATTGGTATATTTTATATTAAAAGGAAAGACCATATTCAAAACGTAGATGACACTAAAACCATAATCTTGTTGTGTAAGACCCTTGTAGGGCTAAAGAGCTATGTCTAAACTAATCGAACAACTATTCAGCAATTTTTCACTTGAGAGCTATCCGTATTTTTTGCTTCAAATGCACCTATGAGAAAGGGATCAACACTCCATCATGGTTAACTGCAGGGATAAAGCTCGAGAAAAACAACGGCAGAAGACATTGAAAAGGAAAGCAGAAGAGCTAGCTCTAAGACCAGAGATAGAGAGGAGGAGGAAAGCCCCGGAGAAGCCTGAAAAGCCAAAGCGGAAGAAAACCGGTAAACAGCGTCAAGCAGTCCAAACCAAGGAGGACATGGATGAGCTCACGAATGAGTACCGGCTTCTGAAGAAGCTGAAGCGGGGGGTGATCGACGAGGACGAGTACGAGAAGCTCACCGGATTCGGGGAATCTGACGACGAAGATTCCTCAGATGGCGGCGACTCTGATCTGGACGAGAGAAAGGAGAGGGGCAACAAGGTGCTCAAGAAAATCAAGCAGAAGGGGAAGGCAAAAGGGTCTAGGAGATTTGAAGGGAGGAGCAAACAGAAGACTAGGAGAAGATGA</dnaseqindica>

External Link(s)

EnsemblPlants:BGIOSGA002329

Retrieved from "https://ngdc.cncb.ac.cn/ricewiki/index.php?title=BGIOSGA002329&oldid=40053"