BGIOSGA002400

From RiceWiki
Revision as of 10:35, 26 June 2012 by 127.0.0.1 (talk) (Created page with "{{IndicaGene| GeneName = BGIOSGA002400| Description = Putative uncharacterized protein| Definition = Oryza sativa Indica Group BGIOSGA002400, complete gene.| tag = OsI_003...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

BGIOSGA002400

Description

Putative uncharacterized protein

Definition

Oryza sativa Indica Group BGIOSGA002400, complete gene.

LocusTag

OsI_00386

Ensembl Transcript ID

BGIOSGA002400-TA

Ensembl Protein ID

BGIOSGA002400-PA

Length

2352

Source

Oryza sativa Indica Group

 ORGANISM  Oryza sativa Indica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:3004550..3006901

Sequence Coding Region

3006802..3006901,3006342..3006488),complement(3006028..3006218,3005636..3005914),complement(3005228..3005392
,3004890..3005102),complement(3004550..3004783

Genome Context

<gbrowseImage1> name=IndicaChromosome01:3004550..3006901 source=RiceIndica01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=IndicaChromosome01:3004550..3006901 source=RiceIndica01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>ATGGCCATGGATTCCACCGCCGTTGGTGGCGAGAGCAGTCAGCGCGGCGGCCTGCGTGCGTCTGAGCTCTCTGCCTCTTTTGGACTCGTCGATGGTGGTGCTGTGGAGAGGGTTTTTCCCCAGAAGAGTTTTGATCAGAATATTTGGGCATCAGAACGAGGGAAAAATCTGAAGAGGAAAGCTACAGTCTCACCTACTATGAATTGTGAAAATTTGACTGAAGAAGAATATTTGGTCGATACTGAAGAAGATTCTAGGAGAATTTCCAGGGAGATCGATGATCTGAGGTCTCATCTAGCTGCCAAGATGAAAGAGCTTGAGTATTGTGAGGAGATCAAGAATCTTAGGATTGAGCTGGCACAGAAGGCTAAAGAAATTGAAAGTTTGAAGAAGCTGAATAAGGAGGTGGAAGCCAAGGGTGAGAGCTCCCCAAAGAACAGGGAAAAGGAAGATTTCCTTGCAAGAATGCTTCAGCTGGAAAAAGAGCTGTATGAAAAACATCAACTTGAGCTTGAAGTAACACAGTTGAATGGTACACTTCAAGTGATGAAACATTTGGAAGGAGACGATGATGGGGATATTCATGACAAGATGGAGAAATTGAGCGGAAGATTAGAACGTAAAAAGGAATGTCTGGAAGAATTAAGCAGAGAGTTGTTGAAGAAAGAACGTGAAAGCAATGATGAGTTACAAGAGGCCAGAAAAGAACTGATAATGCTCAAACAGCAACTTCAAGTGATGAAATATCTGGACCAGATGGAGAAATTGAGTGACATATTAGAATGTGAAAAGAAACGTTTGGAAGAATTGAGCGGAGAGCTGGTGAAAAAAGAACGTGAAAGCAACGATGAGTTACAAGAGGCCAGAAAAGAACTGACAATGGGTTTGGAGAAAATGCTAACTGGGCGAACTGCTATTGGGATAAAAAGGATGGGGGAACTCGATGAGAAACCTTTCCAAACTGAATGCAAGAGAAAGTATGGAAACGATGATTACGAGACTAAAGCTGCAGATCTGGTCTCAAGTTGGCAGGAGGAAATAAGGAAGCCATCCTGGCATCCTTATAAGATTATAACGGTTGATGGTGAAGATAAGGAAGTTGTAGATGATGACGACACGAAGCTGCGGGACTTGTGGATCGAGTACGGTGACGATGTGTGCAATGCAGTGAAGACCGCCCTGAGCGAGGTCAATGAGTACAATGCCAGTGGACGGTATGTTGTGCCCGAGCTGTGGAACTTCAGGAAAGGCCGAAAGGCGACAATGAAGGAGGTGCTCAAGTACATCTTTGGACAGATAGAGACAACCAGCAAGCGCAGGAGGCCGTGA</cdnaseq>

Protein Sequence

<aaseq>MAMDSTAVGGESSQRGGLRASELSASFGLVDGGAVERVFPQKSFDQNIWASERGKNLKRKATVSPTMNCENLTEEEYLVDTEEDSRRISREIDDLRSHLAAKMKELEYCEEIKNLRIELAQKAKEIESLKKLNKEVEAKGESSPKNREKEDFLARMLQLEKELYEKHQLELEVTQLNGTLQVMKHLEGDDDGDIHDKMEKLSGRLERKKECLEELSRELLKKERESNDELQEARKELIMLKQQLQVMKYLDQMEKLSDILECEKKRLEELSGELVKKERESNDELQEARKELTMGLEKMLTGRTAIGIKRMGELDEKPFQTECKRKYGNDDYETKAADLVSSWQEEIRKPSWHPYKIITVDGEDKEVVDDDDTKLRDLWIEYGDDVCNAVKTALSEVNEYNASGRYVVPELWNFRKGRKATMKEVLKYIFGQIETTSKRRRP</aaseq>

Gene Sequence

<dnaseqindica>1..100#414..560#684..874#988..1266#1510..1674#1800..2012#2119..2352#ATGGCCATGGATTCCACCGCCGTTGGTGGCGAGAGCAGTCAGCGCGGCGGCCTGCGTGCGTCTGAGCTCTCTGCCTCTTTTGGACTCGTCGATGGTGGTGGTAAGAAAATTTCTGCTTTGCTTTTCGATCCACCCTGCTACTAATGCTGTCTGCAGTAGTAGTTTATCTAACTTGGTTGTTGTAATCTGATCTCTGAGACTATATGGCCCTTTCCTTACCACCTTTTTTTTTTCTCTACTGCTAAAGTTGGTTCATTTTGTTTCAGAAAGTTATCTCCTTTTTTGTTTAGAGATAAGAGCAAGGTGGTAGTGTGGTAGAGTTTGTTTCCCCCCCAATTTCTTGTAGCATGTATATCTGTTTGTCAGTGCATGGATATCTCATCTGAATCACTGATGGATGCATAAATGTGCAGCTGTGGAGAGGGTTTTTCCCCAGAAGAGTTTTGATCAGAATATTTGGGCATCAGAACGAGGGAAAAATCTGAAGAGGAAAGCTACAGTCTCACCTACTATGAATTGTGAAAATTTGACTGAAGAAGAATATTTGGTCGATACTGAAGGTATGAGTGCAAAATCTACTAGGATCTTGATTTATTGATCCAAGTTGTACTCATTCAGATACTGGCTTGCATTGTTGGAAGTTCTCTGACATATCATGGTCTTCAATACTCTTGTCTTCTCAGAAGATTCTAGGAGAATTTCCAGGGAGATCGATGATCTGAGGTCTCATCTAGCTGCCAAGATGAAAGAGCTTGAGTATTGTGAGGAGATCAAGAATCTTAGGATTGAGCTGGCACAGAAGGCTAAAGAAATTGAAAGTTTGAAGAAGCTGAATAAGGAGGTGGAAGCCAAGGGTGAGAGCTCCCCAAAGAACGTAAGTATACTATAAAGAGCAAGTTTTCCATAGTTACTTGTGTGATATCTCTATGTGATAGAATAATGTAGTGAACTAAATATATTGTTATTATTATAACCTTAAAATAACAGAGGGAAAAGGAAGATTTCCTTGCAAGAATGCTTCAGCTGGAAAAAGAGCTGTATGAAAAACATCAACTTGAGCTTGAAGTAACACAGTTGAATGGTACACTTCAAGTGATGAAACATTTGGAAGGAGACGATGATGGGGATATTCATGACAAGATGGAGAAATTGAGCGGAAGATTAGAACGTAAAAAGGAATGTCTGGAAGAATTAAGCAGAGAGTTGTTGAAGAAAGAACGTGAAAGCAATGATGAGTTACAAGAGGCCAGAAAAGAACTGATAATGGTATGGCCCCATTTCTGTATGATGCTTGGCAAAATTCCTTGTGCCTGTCTGTTCTTTATTTCTCTGATGACTGATATTCATGAAAAGGTTTTCATCTGTAGAATGTAAGTATACTATAATCTCTGGCCTTTTCTCCAAAAAAAGAATATTATAAGTTTTCTATAAGTACTTGTGTGATTTCTCTATGTGATAGAATAATGTAGTGAACTAATATCCTGTTATTATGACCACGATTTCAAACAGCTCAAACAGCAACTTCAAGTGATGAAATATCTGGACCAGATGGAGAAATTGAGTGACATATTAGAATGTGAAAAGAAACGTTTGGAAGAATTGAGCGGAGAGCTGGTGAAAAAAGAACGTGAAAGCAACGATGAGTTACAAGAGGCCAGAAAAGAACTGACAATGGTATTACTCCATTTCTCTATGATGCTTGGCAAAATTCCTTGTACCTATCTGTTCTTTATTTCTTTAATGCATTGATATTCATGAAAAGCTTTTCATACATGATCATAATCATTTGCAATTGACAGGGTTTGGAGAAAATGCTAACTGGGCGAACTGCTATTGGGATAAAAAGGATGGGGGAACTCGATGAGAAACCTTTCCAAACTGAATGCAAGAGAAAGTATGGAAACGATGATTACGAGACTAAAGCTGCAGATCTGGTCTCAAGTTGGCAGGAGGAAATAAGGAAGCCATCCTGGCATCCTTATAAGATTATAACGGTTGATGGTGAAGATAAGGTACTCGCTCAGCTGTTCTATATTTGACTCTTGTATGATATCTGACATTAGAGCCTAGTGTTTTTTTTTTCTTTCTGTAAGTTGTAACCATCGTCGAGTTATGTAGGAAGTTGTAGATGATGACGACACGAAGCTGCGGGACTTGTGGATCGAGTACGGTGACGATGTGTGCAATGCAGTGAAGACCGCCCTGAGCGAGGTCAATGAGTACAATGCCAGTGGACGGTATGTTGTGCCCGAGCTGTGGAACTTCAGGAAAGGCCGAAAGGCGACAATGAAGGAGGTGCTCAAGTACATCTTTGGACAGATAGAGACAACCAGCAAGCGCAGGAGGCCGTGA</dnaseqindica>

External Link(s)

EnsemblPlants:BGIOSGA002400