Os11g0433500

From RiceWiki
Revision as of 09:09, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os11g0433500| Description = Similar to Protein transport protein Sec23A (SEC23-related protein A)| Version = NM_001074330.1 GI:115485308 GeneID:4...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os11g0433500

Description

Similar to Protein transport protein Sec23A (SEC23-related protein A)

Version

NM_001074330.1 GI:115485308 GeneID:4350403

Length

4430 bp

Definition

Oryza sativa Japonica Group Os11g0433500, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 11

Location

Chromosome 11:15841676..15846105

Sequence Coding Region

15841678..15841722,15841819..15841991,15842070..15842151,15842537..15842614,15843614..15843775
,15843855..15844118,15844853..15844957,15845685..15845831

Expression

GEO Profiles:Os11g0433500

Genome Context

<gbrowseImage1> name=NC_008404:15841676..15846105 source=RiceChromosome11 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008404:15841676..15846105 source=RiceChromosome11 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>attaaggttcaaggtattattggaccatgcacatctttggaaaagaaaggagctctatgtgccgacacagttgttggtcaaggaaatacaacagcatggaaaatgtgtggtcttgacaggaatacttcattaacagtattttttgatgtctcaccgagtgagcggtcaagccaaccaggacatcagaatcccgatctgtatatacaatttgtaacaagttaccaacacccagaaggtcaaatgaggattagagttactaccatatgcagaaaatgggtggatggatctaccaacacagaggaattagtcgagggttttgaccaggaaactgcagctgttgtgttggcgagatacatctcgttgaaaatggaaatggaggaagagttcgatgcaacacggtggcttgatagatccctcatacggctttgttcaagatttggggattatcggaaggatgatccatcttcatttagcttgcattcaaatttctctttgtttcctcagtttatgtttaatctacggcgttcacaatttgttcaggttttcaataacagtccagatgagacagcttatttccggatgttactcaaccgtgagagtatcactaactcagttgccatgattcaaccatcattaatttcattctcttttgatttgcctccatctcctgtattcctcgatgtggcatcaatagcagcagatcgtatactgctacttgatgcatacttcagtgttgtcatcttccatggtatgacaattgctcagtggagaaacatgggttaccagaatcaacctgagcatcagcaatttgcacaattgttgcaagctcctcacgaggaggctcaaataataattaaaggacgatttcctgctccaagactagttgtctgtgaccaacatggctcacaggcaaggttcttgttggcaaagctgaacccatcggctacatataactcagcacatgatgttcctccaggttctgacatcatattcacggatgatgttagtttccaggtcttctgtgagcatcttcaaaggctggccgttcagtcctaa</cdnaseq>

Protein Sequence

<aaseq>IKVQGIIGPCTSLEKKGALCADTVVGQGNTTAWKMCGLDRNTSL TVFFDVSPSERSSQPGHQNPDLYIQFVTSYQHPEGQMRIRVTTICRKWVDGSTNTEEL VEGFDQETAAVVLARYISLKMEMEEEFDATRWLDRSLIRLCSRFGDYRKDDPSSFSLH SNFSLFPQFMFNLRRSQFVQVFNNSPDETAYFRMLLNRESITNSVAMIQPSLISFSFD LPPSPVFLDVASIAADRILLLDAYFSVVIFHGMTIAQWRNMGYQNQPEHQQFAQLLQA PHEEAQIIIKGRFPAPRLVVCDQHGSQARFLLAKLNPSATYNSAHDVPPGSDIIFTDD VSFQVFCEHLQRLAVQS</aaseq>

Gene Sequence

<dnaseqindica>3..47#144..316#395..476#862..939#1939..2100#2180..2443#3178..3282#4010..4156#acattaaggttcaaggtattattggaccatgcacatctttggaaaaggtaggggtatctgttccatctagtcaatgctctaagatatttcaaattggaaaggcctattttgagacttggtttaatacatcatggcatttgtagaaaggagctctatgtgccgacacagttgttggtcaaggaaatacaacagcatggaaaatgtgtggtcttgacaggaatacttcattaacagtattttttgatgtctcaccgagtgagcggtcaagccaaccaggacatcagaatcccgatctgtatatacaatttgtaacaaggtacctttcatttttattctgttgcctccagtgtaagaatggcttgatgttataattgtgcttttgttttctctgtagttaccaacacccagaaggtcaaatgaggattagagttactaccatatgcagaaaatgggtggatggatctaccaacacagaggttggccttgaaaatctgttctttagttcctatactatgttgttgaatactgctaaactatatctcaacaatcctaattgtattatttctcatgtctgtgcgtaacaacccatgtattttatagccagcaaggacaattacgctctgctggctagacagtgaacagcatatctgaaaattttggttaaatgttaacaatgctttggaaaatatttttaagcttttacactgtttgtcgtatagctgcaaaaaaaggtgtttcttggcttgaacaatctggattccaaaacatgctgtgtcgtactgtttaatttatttaatgatagggcaagtaagggcaaatatgttgcggttttgactttaactgacatctatttgactgtaggaattagtcgagggttttgaccaggaaactgcagctgttgtgttggcgagatacatctcgttgaaaatggaaatggaggtaactttcttcatgcttcatgactccagtaattatatgtttggttccatgtatgattttatctgacatcatcaaaacctgaatgcctgatattatgtcaaactagatgcatgtgtgttgtatagcaaatctgatattatgtcttgctgtgatacttacatccacccactgtcagtgttggccaaacggtccatttcacattaaatgagctttgaatggttgatcaaagttagcatgtagttggattcctggattttgtttaatttggttttatacaatatttatgttcatgatatttcataatgtaatagttaccatctaactgctatacctccgtttcaggttataagactttctagcattgcccacattcatatatatgttaatgaatctagacatttatgtgtgcctagattcattaacatctatatgaatgtgagcaatgctagaaagtcttataacctgaaacggaggaagtatattttttttatcttgttgtcaaaactctattttcatccagcaattccccccctagggtttgctgtgccacgtaatttggacaaagaattggctatatataggagtttgtgtaatgtgccaaagcattctttcttttcacttagttgctttcctgctttttttagtaaattcatgatgtcatctcagtcacttccatacaacaatgccactcttatctaccttcctatttgagcatctgaattataccacacatttctatgtgaatttttatatctttgaactgaaaatgtaacagagacattgccttcatttgtaaggtgtattactaattgacatatttatctacttgattcaattaacatttttttaaaccttgtgtgcatatcatgatgttgcttaggccttccaagttaaaaaaggaaaacataaaatttataagttcaatctgttgtcccttttgtgttgctaatgaaactatgtagatggatcgttaacgttttttgttgaccatccttgtaggaagagttcgatgcaacacggtggcttgatagatccctcatacggctttgttcaagatttggggattatcggaaggatgatccatcttcatttagcttgcattcaaatttctctttgtttcctcagtttatgtttaatctacggcgttcacaatttgttcaggtgatgtgttgcactttttttttttggttatctttaggaaatccttgccttattaatactagcattttccttgtcacaggttttcaataacagtccagatgagacagcttatttccggatgttactcaaccgtgagagtatcactaactcagttgccatgattcaaccatcattaatttcattctcttttgatttgcctccatctcctgtattcctcgatgtggcatcaatagcagcagatcgtatactgctacttgatgcatacttcagtgttgtcatcttccatggtatgacaattgctcagtggagaaacatgggttaccagaatcaacctgagcatcaggtgagcatcctttctgcatttctacccataagaacttattcctcctgtgattgacttaagggtgtattggttatatagccgtctcaattgtactgtagttatcacttcagaagaaacattggtcagacttcctaggctttggtagcagcatattctagttctagaaactggttaactacatgtttgttggtttcaccagttgctctaatgacagtgtatgctctagttatcactcagtatcaccagtcccttattatagaagaggttacagcatgcgttttgtagccattagctgtgtggacctgaaacccttgccacaatctctttcagtgacggccctttataatccatttgtctagcacaatactactgaaaacttgtatatattacataaaaactcaaagtcaacttgagatttgaaaatgcgaaccagaggacgaaaaaagctgctttctgtgttattattaatctgaactctgaactgtccagattcagtttttactgccaaaatggttttcaaaactcttctatgaagacctcgcagagacgttacatatttgataagtccgcattgttgaccacacatgtttaaatatattggatctatgttcttctatgattgtcaattgaactttttcgtgtatataggttagctgatgttttgatgcaacctattgacaagctagaacttccatgtttatgatgcttaatataactctccgtatttgtttcagcaatttgcacaattgttgcaagctcctcacgaggaggctcaaataataattaaaggacgatttcctgctccaagactagttgtctgtgaccaacatggctcacaggtatgttatcacagttgttatttttctttcttaattgttcctactaccattaatggcttgtactctccatgcagttaactggaaacaactaaatgctcatggttaagaatgagcctacatacatgtcctatcaccatctaaaaccatgaatattttataaaattataaaattgcatacatacgttcatatgccttaattgtaaaattatcttgataatagcataaatgtgtgaagttgttctcaaacttttatgtactcaatttggatagtctaaggccaaataagaaggcaacaaatggaagaactatttgtgtacaagttgtggtagataagctataaagcataaagatatgctatatccaaagcctttatgacaaataagtttgttaaaatcgcaatcctgaatcagaattgggggtctctaaccaatcacagaatcacatacataaaaattgtaaaatcgtagattctgcctactagaatcatagaatcaggcctcttgattaggatagtaaattcgtagaattgtatggaagaatcgagttacaaccttgatgataaatgcgtggaaaatttgaagtatttgatcatgtttgccatgtttacctgttttatttgaggaactgtataatttggctctccttagaattcctcacacaaaaactcaaagaaacagtaacttcattatgtgatagctaacatcaaatgctcctccgttctatgcaggcaaggttcttgttggcaaagctgaacccatcggctacatataactcagcacatgatgttcctccaggttctgacatcatattcacggatgatgttagtttccaggtcttctgtgagcatcttcaaaggctggccgttcagtcctaaggacatgtatgcaaagttgtacaccgtatctgatagctatatttactgagtttggtaggtctgagttgtgggagatttctgctttccctttttttgacctcatgtgttcttattacatcgtgtcaggttttccgacatcagacaattttttcgggaaataatcttgaaagcatgtataagttgtccccataatattatttatccatcatatatacttctttatattgacctcactgtcatcttaaggtgtatagacaagtaagatttttgtggt</dnaseqindica>

External Link(s)

NCBI Gene:Os11g0433500, RefSeq:Os11g0433500