BGIOSGA002877

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Revision as of 10:43, 26 June 2012 by 127.0.0.1 (talk) (Created page with "{{IndicaGene| GeneName = BGIOSGA002877| Description = BGIOSGA002877| Definition = Oryza sativa Indica Group BGIOSGA002877, complete gene.| tag = | tid = BGIOSGA002877-TA|...")
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Gene Name

BGIOSGA002877

Description

BGIOSGA002877

Definition

Oryza sativa Indica Group BGIOSGA002877, complete gene.

LocusTag

'

Ensembl Transcript ID

BGIOSGA002877-TA

Ensembl Protein ID

BGIOSGA002877-PA

Length

2154

Source

Oryza sativa Indica Group

 ORGANISM  Oryza sativa Indica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:4391908..4394061

Sequence Coding Region

4391908..4392173,4392221..4392415,4392588..4392701,4393068..4394061

Genome Context

<gbrowseImage1> name=IndicaChromosome01:4391908..4394061 source=RiceIndica01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=IndicaChromosome01:4391908..4394061 source=RiceIndica01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>ATGTCCTCCGCCGGCCACGCCGTCGACCAGCAGCGCAAATCCACCACGATGAAGGCGCACTTCGTGCTGGTCCCGATGATGGCGCAGGGACACATGATCCCCATGACCGGCATGGCCCGCCTGCTGGCCGAGCATGGCGCGCAGGTCAGCTTTGTCACCACTCCGGTGAACGCCGCCAGGATGGCAGGATTCGTCACCGCTGTGGAGGCGGCTGGCCTGGCAGTGCAGCTGGTGAAGCTCCCCTTCCCGGGCACCCGANNGTTTGGGGATCTCAGCCGAAACTTCATGGAGGCCTGCGGAGCGCTCCGGGAGCCGCTCACGGCGAGGCTCCGTCAGCTATGCCCACCTCCAAGCTGCATCATATCTGACATGGTGCAGTGGTGGACCGGTGAAATTGCAAGGGAGCTCGGTATCCCAAGGCTAACATTTGATGGCTTCTGTACCTTCGCCTCCCTTGCCAGGTATATCATTTTCCGCGACAAACTGTTGGACAATGTCGCAGATGAGGAGATCGTCACTTTCTCAGGGTTCCCTATGCTGCTTGAGTTGCCAAAGGCTAGATGCCCTGGAAGCTTGTATATCATTTTCCGCGACAAACTGTTGGACAATGTCGCAGATGAGGAGATCGTCACTTTCTCAGGGTTCCCTATGCTGCTTGAGTTGCCAAAGGCTAGATGCCCTGGAAGCTTGTGTGTTCCAGGTATGGAACAAATTCGTGATAAGATGTATGAGGAGGAGCTGCAAAGCGATGGCAATGTCACGAACAGCTTCCAGGAGCTGGAGACTCTGTACATCGAGTCCTTTGAACAGATAACAGGTAAGAAGGTCTGGACAATCGGCCCAATGTGCCTCTGTGACAGAGACAGCAACATGATGGCTGCTAGAGGAAACAAGGCATCAGTGGATGAGGCAAAGTGCTTGCAATGGCTTGATTCAAAGAAGCCTGGTTCAGTGATCTTTGTCAGCTTTGGCAGCCTCGCCAGCACCGCACCTCAGCAGCTTGTTGAGCTGGGACTGGGGCTTGAAGCTTCCAAGGAGCCTTTCATCTGGGTGATCAAAGCAGGAAATAAGTTTCCAGAAGTTGAGGAATGGCTTGCAGATGGGTTCGAGGAACGCGTTAAAGACAGAGGCATGATAATAAGGGGCTGGGCACCACAGGTGATGATCCTATGGCACCAGGCCATTGGAGGGTTCATGACACACTGTGGGTGGAACTCAACAATAGAGGGCATTTGCGCGGGCGTGCCCATGATCACATGGCCACATTTCGCAGAGCAGTTTTTGAATGAGAAATTTGTGGTGAATCTGCTGAAAATTGGGCTGGAGATTGGAGTGAAAGGAGTGGCACAATGGGGAAGTGAACATAAAGAAGTTAGGGTGACAAGGAATGCTGTGGAGACAGCAGTGTCCACATTGATGAATGATGGAGAAGCTGCACAGGAGATGAGGATGAGAGCAAAAGACTTGGGTGTAAAGGCAAGGAGGGCTTTGGAAGAGGGAGGTTCTTCCTATGATAACATAAGGCTATTGATTCAAGAAATGGGAAACAAGCAAAATGCATCTGGTTGA</cdnaseq>

Protein Sequence

<aaseq>MSSAGHAVDQQRKSTTMKAHFVLVPMMAQGHMIPMTGMARLLAEHGAQVSFVTTPVNAARMAGFVTAVEAAGLAVQLVKLPFPGTRXFGDLSRNFMEACGALREPLTARLRQLCPPPSCIISDMVQWWTGEIARELGIPRLTFDGFCTFASLARYIIFRDKLLDNVADEEIVTFSGFPMLLELPKARCPGSLYIIFRDKLLDNVADEEIVTFSGFPMLLELPKARCPGSLCVPGMEQIRDKMYEEELQSDGNVTNSFQELETLYIESFEQITGKKVWTIGPMCLCDRDSNMMAARGNKASVDEAKCLQWLDSKKPGSVIFVSFGSLASTAPQQLVELGLGLEASKEPFIWVIKAGNKFPEVEEWLADGFEERVKDRGMIIRGWAPQVMILWHQAIGGFMTHCGWNSTIEGICAGVPMITWPHFAEQFLNEKFVVNLLKIGLEIGVKGVAQWGSEHKEVRVTRNAVETAVSTLMNDGEAAQEMRMRAKDLGVKARRALEEGGSSYDNIRLLIQEMGNKQNASG</aaseq>

Gene Sequence

<dnaseqindica>1..266#314..508#681..794#1161..2154#ATGTCCTCCGCCGGCCACGCCGTCGACCAGCAGCGCAAATCCACCACGATGAAGGCGCACTTCGTGCTGGTCCCGATGATGGCGCAGGGACACATGATCCCCATGACCGGCATGGCCCGCCTGCTGGCCGAGCATGGCGCGCAGGTCAGCTTTGTCACCACTCCGGTGAACGCCGCCAGGATGGCAGGATTCGTCACCGCTGTGGAGGCGGCTGGCCTGGCAGTGCAGCTGGTGAAGCTCCCCTTCCCGGGCACCCGANNGTTTGGGTTTGCCCGGAACGGGGTTGCGAAAACCTGGATATGATCCAGTCCAGGGATCTCAGCCGAAACTTCATGGAGGCCTGCGGAGCGCTCCGGGAGCCGCTCACGGCGAGGCTCCGTCAGCTATGCCCACCTCCAAGCTGCATCATATCTGACATGGTGCAGTGGTGGACCGGTGAAATTGCAAGGGAGCTCGGTATCCCAAGGCTAACATTTGATGGCTTCTGTACCTTCGCCTCCCTTGCCAGGTAAAAATCATAGAAAAAGCAAGTTTTGTGAGGCAACTAGCTTTCGAATGAGTTAATCTTGTGTCAATAAAGTATTCTCAATATGAAGAGCATGCACTTGAACCGGAGAGAATTTTCAGGTAGCATAAGAAGTACCAGTTAGATGTAACTGAAGTACGATACTACCTTGCAGGTATATCATTTTCCGCGACAAACTGTTGGACAATGTCGCAGATGAGGAGATCGTCACTTTCTCAGGGTTCCCTATGCTGCTTGAGTTGCCAAAGGCTAGATGCCCTGGAAGCTTGTGTGTTCCAGGTATGGAACAAATTCGTGATAAGATGTATGAGGAGGAGCTGCAAGCGATGGCAATGTCACGAACAGCTTCCAGGAGCTGGAGACTCTGTACATCGAGTCCTTTGAACAGATAACAGTTAGAAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTTGCCAGGTAAAAATCATAGAAAAAGCAAGTTTTGTGAGGCAACTAGCTTTCGAATGAGTTAATCTTGTGTCAATAAAGTATTCTCAATATGAAGAGCATGCACTTGAACCGGAGAGAATTTTCAGGTAGCATAAGAAGTACCAGTTAGATGTAACTGAAGTACGATACTACCTTGCAGGTATATCATTTTCCGCGACAAACTGTTGGACAATGTCGCAGATGAGGAGATCGTCACTTTCTCAGGGTTCCCTATGCTGCTTGAGTTGCCAAAGGCTAGATGCCCTGGAAGCTTGTGTGTTCCAGGTATGGAACAAATTCGTGATAAGATGTATGAGGAGGAGCTGCAAAGCGATGGCAATGTCACGAACAGCTTCCAGGAGCTGGAGACTCTGTACATCGAGTCCTTTGAACAGATAACAGGTAAGAAGGTCTGGACAATCGGCCCAATGTGCCTCTGTGACAGAGACAGCAACATGATGGCTGCTAGAGGAAACAAGGCATCAGTGGATGAGGCAAAGTGCTTGCAATGGCTTGATTCAAAGAAGCCTGGTTCAGTGATCTTTGTCAGCTTTGGCAGCCTCGCCAGCACCGCACCTCAGCAGCTTGTTGAGCTGGGACTGGGGCTTGAAGCTTCCAAGGAGCCTTTCATCTGGGTGATCAAAGCAGGAAATAAGTTTCCAGAAGTTGAGGAATGGCTTGCAGATGGGTTCGAGGAACGCGTTAAAGACAGAGGCATGATAATAAGGGGCTGGGCACCACAGGTGATGATCCTATGGCACCAGGCCATTGGAGGGTTCATGACACACTGTGGGTGGAACTCAACAATAGAGGGCATTTGCGCGGGCGTGCCCATGATCACATGGCCACATTTCGCAGAGCAGTTTTTGAATGAGAAATTTGTGGTGAATCTGCTGAAAATTGGGCTGGAGATTGGAGTGAAAGGAGTGGCACAATGGGGAAGTGAACATAAAGAAGTTAGGGTGACAAGGAATGCTGTGGAGACAGCAGTGTCCACATTGATGAATGATGGAGAAGCTGCACAGGAGATGAGGATGAGAGCAAAAGACTTGGGTGTAAAGGCAAGGAGGGCTTTGGAAGAGGGAGGTTCTTCCTATGATAACATAAGGCTATTGATTCAAGAAATGGGAAACAAGCAAAATGCATCTGGTTGA</dnaseqindica>

External Link(s)

EnsemblPlants:BGIOSGA002877