BGIOSGA002891

From RiceWiki
Revision as of 10:43, 26 June 2012 by 127.0.0.1 (talk) (Created page with "{{IndicaGene| GeneName = BGIOSGA002891| Description = Putative uncharacterized protein| Definition = Oryza sativa Indica Group BGIOSGA002891, complete gene.| tag = P0406H1...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

BGIOSGA002891

Description

Putative uncharacterized protein

Definition

Oryza sativa Indica Group BGIOSGA002891, complete gene.

LocusTag

P0406H10.21

Ensembl Transcript ID

BGIOSGA002891-TA

Ensembl Protein ID

BGIOSGA002891-PA

Length

5108

Source

Oryza sativa Indica Group

 ORGANISM  Oryza sativa Indica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:4621936..4627043

Sequence Coding Region

4621936..4622727,4623822..4625471,4626154..4626397,4626493..4627043

Genome Context

<gbrowseImage1> name=IndicaChromosome01:4621936..4627043 source=RiceIndica01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=IndicaChromosome01:4621936..4627043 source=RiceIndica01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>ATGTTTGATCAAAAGCAGTCTATGCTGTGCTCTGATGATAGACCTGGCGGTTCACCTGCAAATGCGGGTGAGGAGATCCCTGAAGACAGGACTACGCTTAAAGATAGCAGGTTTCGCTTTGTTTACTCAAGGAAGCGATCTTGCAGGAGAAAGAATGGATTTCTCAACACTTCAGAACAAGATTCTGATCTTAAATACAGAAAAGTTACAGGTGCGTTGTTTGCTTCAGTTGCTGGCTGGGGGTCTGTTACTGAAAATGTTACATCGAGAAGACATGGCATATTAGTACTGAGCCAGCCATTAAAATCTATTTATAAGATCATGTCTGAAGCATGCCATGTCTGGCTTCTCAATGCTCTCGTTCTCCTTCACCGTGGTGCAATGGTTTCCTTGTGGCCTGCCGTACATCTGGAGATACTTCTTGTTGATGATACTTTAGGATTGAAACACTTGCTTCTTGAGACTTCCTTAAGATCAGCTGTATCCTTATTCTGTTTACTTGTTGGATGTTTCAATTCGTATTCCAAGGCGAGTACACGCAATGAGTCAAAAATGCTATGCACCTCAGTCAGAGTTCGGATATCTGGTTTGCACGGTAGAAGCCAAGTTGTGTTTTTGATGTTCAGCTTCGTGGGGGTAAAGTACCCCAAATGGAAGCACCTGCAAGGACAGCTGCAGCATCACCATATAAAAAGGGGGCTATCTAAAGTTAATTGCGCATGTGCTGACATAAAGCAACTTACAAATGGAACTGATCAAAGAGTCTGTACTTCAACAGAACACTTCTCTAAGGGTCTATCACTCGATGCTCAGGACTCTCTGTTTTTCACAGAATCAAGATATTCAAATGTCGACCCTATCATTTTTTGTCTTGATGAGCGAAGTAAATCTGTTCAAAATCATCTGGATGTGGCAGCTGCACCTTCACTGTTGTTTTTTCACCACTTAAAATTGCGCAGTGAAAGCAACTTGACTTCTAAAAGTCTTCCGGAATTCATGCCGATTACTTTAGAAGAGGATCAGCAGTCTCTGCCACAGCACACATCTGATCTGGTTCATCTGGCTGCTTCTGCTTCTGAAGTTTGTTCTGTTTATGTTAGTCCATCTAATACTGGTTCCTTGGATATGGGTACCGCTGGTTGCATCAATCATTCTGGTTCTGCTAGCAGCAAGCTCAATACTGCTAAAAGGACTGTAAGTCTGGATTGTAATAGCAGAGGTATTGGTGGTGCCAACATAACAAGCAGGAGTTTTCCAGATCAAATTATGGATGGAAGCCTTTCTGCTGTTTGCCCTCCTCAGAAGTATCAAAAGAGGTGTTCTTCTATATCTATTCCTGGAGATAATATATCAGATCCACCAGATGATAAGCTACTTAACAAAGAAGAAAAGGCCATGCAGCCTACATCTGACTTGGTCCAGGAACTGAATGAGTATCCTATTGGTCGTGTTACACCAACTGCCCCCAGGACTCCCTACCATCGGAACCGATTTACATCCCTATCACGCACTTTTGGTGATGGTTCAAAATTATGGCAAGAAGATATTATGGTGACAGGCTTTGCTGGTGGCTCTAAGAAGCCAAGGACTCAGGTTTCGTACTCGGTTTCTCCTAGAAGTGATGAACCTGGCTCAAAACACAAAGGACATTTCCGCAAGATACAGTCTCATAGCAGTGCAAAGAGACTTCCTGATAATTCAAGAAGTGAACAGAGCAGTCCTGAGTCATTGGCTTGTGTTGCAAATGTCCTAGTTACAGTTGGTGATAGAGGATGGAGGGAGTACGATACTCAGATCACAATTGACTCTGATGGGCAGAGTGAACGGAGGATTTGTGTGAAGCTTGCAGAAGGAACTAAGTATGCTCACAAAGTTCTTCAAGTTTTGCAGCCTGGGGCGACAAACCGCTATACACATGCAATGATATGGAAAGGGGGGACAGAGTGGTGCTTAGAATTTCCTGACAGAAGTCAGTGGTTGATTTTCAAGCAAATGCATGATGAATGTTATAGTCATAACATTAGAGCTGCATCTGTTAAGAATATTCCAATTCCTGGTGTCTGCTTTGCTGAAGCTCATGATGATCATGATGCTGTATCCTTTGTACGCTCTCAAGATTATATTGGTCATATTGGAACAGATGTTGAAATGGCACTTGATGAATCTCGTGTGATATATGACATGGACAGTGATGATGAAGTGTGGGTTTCAAGATGGAGGAAACTAGGCAAGGACAGCACCTCTGTGACAGATGACTTGTTTGAGAGGATCATGGACAAATTCGAGAAACTTGCTTATAGCCACAACTGCAATGAACTCACTATTGATCAGATGAAGGAACTAGATAGTGATAACATACCACTGGACACCATTAAAGTGATACATGATTATTGGCAGGACAAGAGGAAGAAAAAGGGAATGCCACTCATTCGACACTTTCAGTCCGCTATGTGGAAGATCCACGAGCAGCAGCTACAGGAATGGGAATCAACAGCACTCAGAATACAGGGTTCATCAAATGGTTACCAAGTTAAGTTGCCTCCAAAACCTGCCTTGTTCGCCTTCTGTTTGAGACCTCGAGGACTCCAACCCCAAATACCGTATAAGGGACCGAAGCAGCGTTCCCATAAAAAACTTATGTCCTCAGGAAGCTTTTCGAGAGAGCAAGATGGCTTTTACCGACCAGGGAGAAAATACAGCGAATATGTGGGGGATGGGAGGGCATGTGAATCCTATGACGGTGGTTCTATCTATTCACCAACAGGGTACTCTCCCAGGTTCTCTGTGAAAACAGAATCCCCTCGCGCATTTGATGGTTTGGAAAGAAGTTCTACACCAAGGTTTTTGAGAACCAACAGTGTCAAAAGGACTGCAAGCTTTGCATTCTCTGAGGATCACCAGCCATCACCTTCCTTCCGTCATCAGAGAGTGAAGCGAGGCGCGCCTGATCACTGGAACGCGGTCATCCACGAATGGCAGAGCTCAAAGCACCTGCTCCCGGGTGCGTCCCAGAGCCCCCGCGTCGACATAGAGGAGCTCAAGCAGCGAGATGCCTCCAGTGCAGCGCAGCATGCGGTGGCCATGGCCAAGCTCAAGAGAGAGAAGGCCCACCTGCTGATGCACAAGGCTGACCTTGCCCTCCACAAGGCCACAGTTGCTCTCATGATGGCCGACGCGATCAAGGCGTCCAGCAGGGACTCTTCCCGGGATGGGAGGAGAGATTTCAGGGACGACTGA</cdnaseq>

Protein Sequence

<aaseq>MFDQKQSMLCSDDRPGGSPANAGEEIPEDRTTLKDSRFRFVYSRKRSCRRKNGFLNTSEQDSDLKYRKVTGALFASVAGWGSVTENVTSRRHGILVLSQPLKSIYKIMSEACHVWLLNALVLLHRGAMVSLWPAVHLEILLVDDTLGLKHLLLETSLRSAVSLFCLLVGCFNSYSKASTRNESKMLCTSVRVRISGLHGRSQVVFLMFSFVGVKYPKWKHLQGQLQHHHIKRGLSKVNCACADIKQLTNGTDQRVCTSTEHFSKGLSLDAQDSLFFTESRYSNVDPIIFCLDERSKSVQNHLDVAAAPSLLFFHHLKLRSESNLTSKSLPEFMPITLEEDQQSLPQHTSDLVHLAASASEVCSVYVSPSNTGSLDMGTAGCINHSGSASSKLNTAKRTVSLDCNSRGIGGANITSRSFPDQIMDGSLSAVCPPQKYQKRCSSISIPGDNISDPPDDKLLNKEEKAMQPTSDLVQELNEYPIGRVTPTAPRTPYHRNRFTSLSRTFGDGSKLWQEDIMVTGFAGGSKKPRTQVSYSVSPRSDEPGSKHKGHFRKIQSHSSAKRLPDNSRSEQSSPESLACVANVLVTVGDRGWREYDTQITIDSDGQSERRICVKLAEGTKYAHKVLQVLQPGATNRYTHAMIWKGGTEWCLEFPDRSQWLIFKQMHDECYSHNIRAASVKNIPIPGVCFAEAHDDHDAVSFVRSQDYIGHIGTDVEMALDESRVIYDMDSDDEVWVSRWRKLGKDSTSVTDDLFERIMDKFEKLAYSHNCNELTIDQMKELDSDNIPLDTIKVIHDYWQDKRKKKGMPLIRHFQSAMWKIHEQQLQEWESTALRIQGSSNGYQVKLPPKPALFAFCLRPRGLQPQIPYKGPKQRSHKKLMSSGSFSREQDGFYRPGRKYSEYVGDGRACESYDGGSIYSPTGYSPRFSVKTESPRAFDGLERSSTPRFLRTNSVKRTASFAFSEDHQPSPSFRHQRVKRGAPDHWNAVIHEWQSSKHLLPGASQSPRVDIEELKQRDASSAAQHAVAMAKLKREKAHLLMHKADLALHKATVALMMADAIKASSRDSSRDGRRDFRDD</aaseq>

Gene Sequence

<dnaseqindica>1..792#1887..3536#4219..4462#4558..5108#ATGTTTGATCAAAAGCAGTCTATGCTGTGCTCTGATGATAGACCTGGCGGTTCACCTGCAAATGCGGGTGAGGAGATCCCTGAAGACAGGACTACGCTTAAAGATAGCAGGTTTCGCTTTGTTTACTCAAGGAAGCGATCTTGCAGGAGAAAGAATGGATTTCTCAACACTTCAGAACAAGATTCTGATCTTAAATACAGAAAAGTTACAGGTGCGTTGTTTGCTTCAGTTGCTGGCTGGGGGTCTGTTACTGAAAATGTTACATCGAGAAGACATGGCATATTAGTACTGAGCCAGCCATTAAAATCTATTTATAAGATCATGTCTGAAGCATGCCATGTCTGGCTTCTCAATGCTCTCGTTCTCCTTCACCGTGGTGCAATGGTTTCCTTGTGGCCTGCCGTACATCTGGAGATACTTCTTGTTGATGATACTTTAGGATTGAAACACTTGCTTCTTGAGACTTCCTTAAGATCAGCTGTATCCTTATTCTGTTTACTTGTTGGATGTTTCAATTCGTATTCCAAGGCGAGTACACGCAATGAGTCAAAAATGCTATGCACCTCAGTCAGAGTTCGGATATCTGGTTTGCACGGTAGAAGCCAAGTTGTGTTTTTGATGTTCAGCTTCGTGGGGGTAAAGTACCCCAAATGGAAGCACCTGCAAGGACAGCTGCAGCATCACCATATAAAAAGGGGGCTATCTAAAGTTAATTGCGCATGTGCTGACATAAAGCAACTTACAAATGGAACTGATCAAAGAGTCTGTACTTCAACAGAACACTTCTCTAAGGTACCAGACCCACCTTACTTATGCAGATCAAATCATTTTTATTATCATTGAGCCATATAGAGCTAGAACTCTAGGGTCTTTTTTGTGTTGAGAAAATTCCTATTGTTAATGCTTTTCCTCCAGATTGTGAGTAAACCATATACCGGCTAATTATATTTCATTCAGTGCTTGGCACTATACTGGACGCTCCGGCTGGTTTACTGAATAGTTCTTTGCATTACGAGAGGCTCAATGTGGTCATGTGTTTAGATAAATTGGATGAAACCACCATACTGAATTTGCTCTTTTGTTTTCTAACTAGCAATAAAATGAACCGATTCCTTGGTAGTGCTACTGGAACCTATATGTTTGCTTTACTCTTGATCCAAGGATATGTAAATGCTAATTTTAGTTGAATTTTTGGAAAACGACTATTCCTTACTAGTCTTGCAGTTTTTTATGTGCTCGGTTCATTTATACGACCTTGTCAATTGTCAACCAATAACTTGAGAGTAAACCTTCTGATGCATTTAACACTAAACCTTCTGATGCACTTTTTGTTGCATCAGTACTGTTGAAACAGTATCCTAAAATACAGACATCTGACTGAATACTTCTTTTATTTGTCTCATGGGACGTGGCTTCCTACAGTAAACTTAGTGCCAAATGTTGTCAGATATTTCATGTGCTGGACTGCTGGTGTATGACTTTAGTGCTCTTTGTTAGCTATCCTTTATAATGAAAAGGCTTCTCTTGATCTATACCATTTCATGATCTGTGGTTTCTCCTGTGAGATATTCTGGACACACATTTTTTTTCCCAGAAACTTTATATGCAGTTATAATTTTCTGCAGATGCCTCACTTGATTTCTGTTATGTTTATCTGCATTGGGAATCATAAATTTGAACTTTTGAAATAAACAGACTATCTGAACTGTTGTTTTTCTTGTTCATCTCTTCCGTCTCGATCAATCCATTATTTAGCCTTTTCCCTTTAAATATCTGCTTTCTTATGTATTTTACATGTTGAATGCGCTGGTGCAAAACATATTGTGCTGAAATACAGGTTTATAGAAAATCTTCTTATTACTGATAATTACTCTTCTGTTAACTAGGGTCTATCACTCGATGCTCAGGACTCTCTGTTTTTCACAGAATCAAGATATTCAAATGTCGACCCTATCATTTTTTGTCTTGATGAGCGAAGTAAATCTGTTCAAAATCATCTGGATGTGGCAGCTGCACCTTCACTGTTGTTTTTTCACCACTTAAAATTGCGCAGTGAAAGCAACTTGACTTCTAAAAGTCTTCCGGAATTCATGCCGATTACTTTAGAAGAGGATCAGCAGTCTCTGCCACAGCACACATCTGATCTGGTTCATCTGGCTGCTTCTGCTTCTGAAGTTTGTTCTGTTTATGTTAGTCCATCTAATACTGGTTCCTTGGATATGGGTACCGCTGGTTGCATCAATCATTCTGGTTCTGCTAGCAGCAAGCTCAATACTGCTAAAAGGACTGTAAGTCTGGATTGTAATAGCAGAGGTATTGGTGGTGCCAACATAACAAGCAGGAGTTTTCCAGATCAAATTATGGATGGAAGCCTTTCTGCTGTTTGCCCTCCTCAGAAGTATCAAAAGAGGTGTTCTTCTATATCTATTCCTGGAGATAATATATCAGATCCACCAGATGATAAGCTACTTAACAAAGAAGAAAAGGCCATGCAGCCTACATCTGACTTGGTCCAGGAACTGAATGAGTATCCTATTGGTCGTGTTACACCAACTGCCCCCAGGACTCCCTACCATCGGAACCGATTTACATCCCTATCACGCACTTTTGGTGATGGTTCAAAATTATGGCAAGAAGATATTATGGTGACAGGCTTTGCTGGTGGCTCTAAGAAGCCAAGGACTCAGGTTTCGTACTCGGTTTCTCCTAGAAGTGATGAACCTGGCTCAAAACACAAAGGACATTTCCGCAAGATACAGTCTCATAGCAGTGCAAAGAGACTTCCTGATAATTCAAGAAGTGAACAGAGCAGTCCTGAGTCATTGGCTTGTGTTGCAAATGTCCTAGTTACAGTTGGTGATAGAGGATGGAGGGAGTACGATACTCAGATCACAATTGACTCTGATGGGCAGAGTGAACGGAGGATTTGTGTGAAGCTTGCAGAAGGAACTAAGTATGCTCACAAAGTTCTTCAAGTTTTGCAGCCTGGGGCGACAAACCGCTATACACATGCAATGATATGGAAAGGGGGGACAGAGTGGTGCTTAGAATTTCCTGACAGAAGTCAGTGGTTGATTTTCAAGCAAATGCATGATGAATGTTATAGTCATAACATTAGAGCTGCATCTGTTAAGAATATTCCAATTCCTGGTGTCTGCTTTGCTGAAGCTCATGATGATCATGATGCTGTATCCTTTGTACGCTCTCAAGATTATATTGGTCATATTGGAACAGATGTTGAAATGGCACTTGATGAATCTCGTGTGATATATGACATGGACAGTGATGATGAAGTGTGGGTTTCAAGATGGAGGAAACTAGGCAAGGACAGCACCTCTGTGACAGATGACTTGTTTGAGAGGATCATGGACAAATTCGAGAAACTTGCTTATAGCCACAACTGCAATGAACTCACTATTGATCAGATGAAGGAACTAGATAGTGATAACATACCACTGGACACCATTAAAGTGATACATGATTATTGGCAGGACAAGAGGAAGAAAAAGGGAATGCCACTCATTCGACACTTTCAGGTGAACAATATATTGCCATTTCTGAGTTTGCCTTGTTGCCGATAGCTTTCTACTAGTTTTGTTCAAAATATTGGGTAGATTTCAATCTAGTTTAAGTTATTACCCTATATTTTTGTGTTTAGTGAACAGCTTTGTCTCCATGATCTGTCCAAGCTTTAAACTAAATTTCAGTTAGTTTTGTGCTTAGGTAGTTTTATGGTCATGCTTATTTATTTTTGCTATGTGAGAGGCAGAGCAGTGTGTGTGCTTAACATAATTTATTCCCAGCTTTAAGACCACCAATTAATTAGACCAAAACATCGTTTACTTGAGCGGAGGTAGTTTTCCACTTTTAGTTTCTTTTCCAAGAGTATTGGATGCCATTGAGCAGTCATATTAAGATGAGTGAGTGTATTATCATGGGATTTCAACTTTCAAGTAGCTTATGTGCTGTGGAACTAGACATACAATTTCTTTTTGGGATATGGTTCTAATAAGAGTGACTGTAGAGCAAGTGTCTAGTCATGGTTTAACTTGAACCCTAGGATGCATGGATTGTGTTGAACTGCTGATGCTTCTGGGGAAATGATTGGTTTTGTGCTTCTCAGTTACTATGTTTGAATACAACTAAACGGATAAAGTGCAGTGCACCAAAAATGTTCAGTACTTACGGCCTCTAACCTTGTATTTGTACCATTTTCAGTCCGCTATGTGGAAGATCCACGAGCAGCAGCTACAGGAATGGGAATCAACAGCACTCAGAATACAGGGTTCATCAAATGGTTACCAAGTTAAGTTGCCTCCAAAACCTGCCTTGTTCGCCTTCTGTTTGAGACCTCGAGGACTCCAACCCCAAATACCGTATAAGGGACCGAAGCAGCGTTCCCATAAAAAACTTATGTCCTCAGGAAGCTTTTCGAGAGAGCAAGATGGCTTTTACCGACCAGGTTCGTTTTCTTAACTTTTTTTTTTTCTAATCATTGATCCAGTGCCATATTTTGTCATTATATTTTGCTGATACGAGGTTTCTGTCAAATATCAGGGAGAAAATACAGCGAATATGTGGGGGATGGGAGGGCATGTGAATCCTATGACGGTGGTTCTATCTATTCACCAACAGGGTACTCTCCCAGGTTCTCTGTGAAAACAGAATCCCCTCGCGCATTTGATGGTTTGGAAAGAAGTTCTACACCAAGGTTTTTGAGAACCAACAGTGTCAAAAGGACTGCAAGCTTTGCATTCTCTGAGGATCACCAGCCATCACCTTCCTTCCGTCATCAGAGAGTGAAGCGAGGCGCGCCTGATCACTGGAACGCGGTCATCCACGAATGGCAGAGCTCAAAGCACCTGCTCCCGGGTGCGTCCCAGAGCCCCCGCGTCGACATAGAGGAGCTCAAGCAGCGAGATGCCTCCAGTGCAGCGCAGCATGCGGTGGCCATGGCCAAGCTCAAGAGAGAGAAGGCCCACCTGCTGATGCACAAGGCTGACCTTGCCCTCCACAAGGCCACAGTTGCTCTCATGATGGCCGACGCGATCAAGGCGTCCAGCAGGGACTCTTCCCGGGATGGGAGGAGAGATTTCAGGGACGACTGA</dnaseqindica>

External Link(s)

EnsemblPlants:BGIOSGA002891