Os11g0474800

From RiceWiki
Revision as of 09:10, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os11g0474800| Description = Stemer-13-ene synthase| Version = NM_001074419.1 GI:115485486 GeneID:4350502| Length = 6945 bp| Definition = Oryza ...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os11g0474800

Description

Stemer-13-ene synthase

Version

NM_001074419.1 GI:115485486 GeneID:4350502

Length

6945 bp

Definition

Oryza sativa Japonica Group Os11g0474800, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 11

Location

Chromosome 11:18261725..18268669

Sequence Coding Region

18261725..18262330,18264073..18264214,18264744..18264959,18265035..18265130,18265225..18265337
,18266594..18266805,18266920..18267017,18267144..18267264,18267369..18267586
,18267735..18267915,18267997..18268285,18268381..18268439,18268558..18268669

Expression

GEO Profiles:Os11g0474800

Genome Context

<gbrowseImage1> name=NC_008404:18261725..18268669 source=RiceChromosome11 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008404:18261725..18268669 source=RiceChromosome11 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgatgctgctgagttcctcctactccggcggacaattccccggagtttcaccccttgggacgcgaccaaagagatccaccacagtagtgcctcgtccagtggtcacaagagcaggtggtgtgaggaataacctggaagtagtgggaaatgcaggaaccctgcaaggcatggacatagatgaactgcgggtgatagtgaggaagcagctgcagggagttgagttatcaccatcttcatacgacacggcatgggtggccatggtgccagtgcaggggtctcgtcagtctccatgcttcccgcagtgcgtcgagtggatacttcagaaccaacaggaggacggatcatggggccattctgcagggccatcaggagaggtaaacaaagatattctattgtctacattggcatgtgttcttgcactcaacatatggaatgttggtcaagatcacatcaggagaggactgagtttcattggaagaaatttctcggttgccattgatgggcaatgtgccgctcctgtcggttttaacattacattttctggtatgcttcgccttgccattgggatgggtttgaaattccctgttatggaaacggatatcgatagtatatttcgcctccgggaggtcgaatttgaaagggatgctggtggcacagcttcagcaaggaaagccttcatggcatatgtatcagaagggttggggagagaacaagattgggatcatgtaatggcatatcaaaggaagaacggttcattgttcaactcgccttccacaacagcagcgtcagcgatccacagctgcaatgacagagctctagactatttggtctctcttacatccaaattgggtggcccagtgccagcgatatatccagacaaggtatactcccagctctgcatggtggatacccttgagaagatggggatctcttctgattttgcttgcgacatacgcgacatattggacatgacctacagttgctggatgcaagatgaggaggagatcatgttggatatggcaacgtgtgcaaaggcatttcgcctccttcgtatgcacggttatgacgtcagctcagagggaatggctcgatttgctgaacgatctagcttcgatgattcaattcatgcatatctcaatgacactaagcccttgctggagttgtacaaaagttcacaagttcacttcttggaagaagatttcatactagagaatatcggttcctggtcagctaaattactcaagcaacaactctcgttcaacaagatatcgaaatcattaatgccagaggttgagtatgcccttaaatatcccttctatgcaaccgtggaagtactagagcacaaggggaacatagagcgattcaacgtaaacggcttccagcgtctgaaatctggatactgcggctccggggcagacaaagaaattctagctttggctgtcaataaattccactacgcccagtctgtttaccaacaagaactccggtatctcgagagctgggtggcagaatttaggctggacgagctgaaattcgcgagagtgattccactgcagtcgcttttgtctgctgttgtccccttgttcccctgcgagttgtccgatgcccgcattgcttggagccagaacgccatactgacggctgtggttgatgacttgttcgacggcggagggtccatggaggagatgctgaatttggtcgcgttattcgacaaatgggacgatcacggtgagattggcttctgctccagcaacgtagagattatgttcaatgctgtttacaacacgaccaagcgtatcggcgcaaaggccgcactggtgcagaagcgttgtgtcatcgatcatattgccgagcaatggcaggtgatggtgagggccatgctgaccgaggcagagtgggcggcgggcaagcacatcccggcaacaatgggggagtacatgtcggtggcggagccgtcgttcgcgttgggccccatcgtccccgtgtcggcgtacctgctcggggaggagctgccggaggaggcggtgcggagcccggagtacggccgtctcctggggctcgccagcgccgtgggccgcctcctgaacgacgtgatgacctacgagaaggagatgggcaccgggaagctcaacagcgtcgtgctgctgcaacctctcgccgccggcggcgccgcctctcgcggcggcggcggcgctccggctccggctccggcgtccgtcgaggcggccagggcggaggtgcggagggccatccaggcgtcgtggagggacctgcatgggctggtgttcggatcaggcggcggcagcagcagcagcatcattccccggccgtgcagggaggtcttctggcacaccgggaaggtggccagcgtcttctaccaggagggagacggctacgcacggaaggcaatgcggagcatggccaacgcggtgattctggagccactgcacctgcaagagtaa</cdnaseq>

Protein Sequence

<aaseq>MMLLSSSYSGGQFPGVSPLGTRPKRSTTVVPRPVVTRAGGVRNN LEVVGNAGTLQGMDIDELRVIVRKQLQGVELSPSSYDTAWVAMVPVQGSRQSPCFPQC VEWILQNQQEDGSWGHSAGPSGEVNKDILLSTLACVLALNIWNVGQDHIRRGLSFIGR NFSVAIDGQCAAPVGFNITFSGMLRLAIGMGLKFPVMETDIDSIFRLREVEFERDAGG TASARKAFMAYVSEGLGREQDWDHVMAYQRKNGSLFNSPSTTAASAIHSCNDRALDYL VSLTSKLGGPVPAIYPDKVYSQLCMVDTLEKMGISSDFACDIRDILDMTYSCWMQDEE EIMLDMATCAKAFRLLRMHGYDVSSEGMARFAERSSFDDSIHAYLNDTKPLLELYKSS QVHFLEEDFILENIGSWSAKLLKQQLSFNKISKSLMPEVEYALKYPFYATVEVLEHKG NIERFNVNGFQRLKSGYCGSGADKEILALAVNKFHYAQSVYQQELRYLESWVAEFRLD ELKFARVIPLQSLLSAVVPLFPCELSDARIAWSQNAILTAVVDDLFDGGGSMEEMLNL VALFDKWDDHGEIGFCSSNVEIMFNAVYNTTKRIGAKAALVQKRCVIDHIAEQWQVMV RAMLTEAEWAAGKHIPATMGEYMSVAEPSFALGPIVPVSAYLLGEELPEEAVRSPEYG RLLGLASAVGRLLNDVMTYEKEMGTGKLNSVVLLQPLAAGGAASRGGGGAPAPAPASV EAARAEVRRAIQASWRDLHGLVFGSGGGSSSSIIPRPCREVFWHTGKVASVFYQEGDG YARKAMRSMANAVILEPLHLQE</aaseq>

Gene Sequence

<dnaseqindica>6340..6945#4456..4597#3711..3926#3540..3635#3333..3445#1865..2076#1653..1750#1406..1526#1084..1301#755..935#385..673#231..289#1..112#atgatgctgctgagttcctcctactccggcggacaattccccggagtttcaccccttgggacgcgaccaaagagatccaccacagtagtgcctcgtccagtggtcacaagaggtacatatatggccgatgttgttaggctgaaatgataaatctgtcatctttcacgtctctttgtggtgagtatctcatgtgtttcctgttctttaatcccttttctggccagcaacagcaggtggtgtgaggaataacctggaagtagtgggaaatgcaggaaccctgcaaggcatggtatagtataccaacatatattaatgttgcacatatgattatgtacatataacatatatatccatcgttgatttcattatttccactgaatacaggacatagatgaactgcgggtgatagtgaggaagcagctgcagggagttgagttatcaccatcttcatacgacacggcatgggtggccatggtgccagtgcaggggtctcgtcagtctccatgcttcccgcagtgcgtcgagtggatacttcagaaccaacaggaggacggatcatggggccattctgcagggccatcaggagaggtaaacaaagatattctattgtctacattggcatgtgttcttgcactcaacatatggaatgttggtcaagatcacatcaggagaggtatgaaagagactattgtccatgctctcttcatgtttgtgtttgaggcctgaacatacttaatacccatgaatctgataggactgagtttcattggaagaaatttctcggttgccattgatgggcaatgtgccgctcctgtcggttttaacattacattttctggtatgcttcgccttgccattgggatgggtttgaaattccctgttatggaaacggatatcgatagtatatttcgcctccgggaggtcgaatttgaaaggtcagtgcaaggaaaagctcaaagacaaacatctccattatacgtagcattttggacatcggcatagtctccaatacatgttctatatatcatacacctctttttttcatctgataattcccacgggcttcacgaattttgccatcagggatgctggtggcacagcttcagcaaggaaagccttcatggcatatgtatcagaagggttggggagagaacaagattgggatcatgtaatggcatatcaaaggaagaacggttcattgttcaactcgccttccacaacagcagcgtcagcgatccacagctgcaatgacagagctctagactatttggtctctcttacatccaaattgggtggcccaggtgcatactgttcactacggaaccaaaaaaaaaaaagtggccaaaaacatatgtcaaccagctatgagtgagatttttttacagtagattcttttttttttcagtgccagcgatatatccagacaaggtatactcccagctctgcatggtggatacccttgagaagatggggatctcttctgattttgcttgcgacatacgcgacatattggacatgacctacaggtatttgcaactcgtaaagattttacgacagaaaagaaaaaagaaaacgagacaagcaactcacaagctgttgtatcattgtacctgacctattccgttatcttgatgattgtgatctgctcgaagttgctggatgcaagatgaggaggagatcatgttggatatggcaacgtgtgcaaaggcatttcgcctccttcgtatgcacggttatgacgtcagctcaggtgctaatctactgaattttgaacaaccttatgcctttgttttgttttttttttcttttctttttctgtgattatttctagaaattttatcgccaacttggaaccgttgagcagagggaatggctcgatttgctgaacgatctagcttcgatgattcaattcatgcatatctcaatgacactaagcccttgctggagttgtacaaaagttcacaagttcacttcttggaagaagatttcatactagagaatatcggttcctggtcagctaaattactcaagcaacaactctcgttcaacaagatatcgaaatcattaatgccagaggtaagtaagtaccacggtaaaaaatgatttttctgtacaagaacccctataggttgcaggcataccataattaagtggtcgcgcctgtaagaatcgatcttcgttttcacatataggtccctaacatcgtcacatgcaaaaatctattttcgtagacgggccacttgatgagccgcttgtaaaaatgagcttactttctcatgcggtccttttaaaggaccgaatgcaaaaataaaaaaaaatcgcatgcaggccttttaaatggtcggcatatgaaaataccctctcttttccacggatattctctcccttcctctttcttttcactctcaacactttaattcttttcacatcccctcctctttctcttcctctcctctctctcttcctctcctcaccgagcgggagcaggcggcgccagacaaggtggccgggagcgggtggcgcaactaccaacaacaagaaggcagccgggaacggcgctgccccgcgtggatccattggccgtggcccgtccccgcgcggatctgacacctagggtcttccctcgcgcggatccgccactggcggtgatgacgtgttgtgggggcggcggatccgacggctacaatgacggcgggcggcggcagcagtgcggccccgcacggatccggtgcctacgatgacgacagcgggtggcggatctggcgccagcgatgatggcaagcggtgggggcgtgcggagggggcagcggatccaacggcaacgatgacgaggcgggcgggagatccggtgtgaaggacgacgggctcgggcggcggcagcggcgccaccccacgcggatccggtgctagcaataacgacgacgatgggtggggagtgggtgaatctagcggtgataacgacaatgggaggtgggtgtagcgtagaggacggtggacccgagcagcgtggagccggccaacgacggcggcgagctagggttcggccgatttaggtttatttttatttttttgctgatattatttttgcatgtggctagtataggtgactgcgtgtgaaaaataagattttcgcttgtagttgcgttgacagcatggaaaaatctgattttttagacctttaatttgtgcatacgattgcgttagccgcatacaaaaatcacttttggatgcatgtaaaaacgatttccgtagtagcgtactactctataacaacatcacagaaattaaaaatgagtcgttctttctcagaacatcactgtcatctttttcaggttgagtatgcccttaaatatcccttctatgcaaccgtggaagtactagagcacaaggggaacatagagcgattcaacgtaaacggcttccagcgtctgaaatctggatactggtgaattcaacatcaattacctcaagggtacaaattcttgctttactaatattaacctgaattctaaactccggtatgtcgtacattggaccagcggctccggggcagacaaagaaattctagctttggctgtcaataaattccactacgcccagtctgtttaccaacaagaactccggtatctcgagaggtgaagatcgagacctatccataaatatatagagtaaaatcaacatataaatttgaaccgcatgtattattgcagctgggtggcagaatttaggctggacgagctgaaattcgcgagagtgattccactgcagtcgcttttgtctgctgttgtccccttgttcccctgcgagttgtccgatgcccgcattgcttggagccagaacgccatactgacggctgtggttgatgacttgttcgacggcggagggtccatggaggagatgctgaatttggtcgcgttattcgacaagtacgtgctaccttcgttttttaacagatgacgccgttcactttttctcacatgtttgaccattcgttttattcaaaaaatttatgtaattgtaatttactttgttatgagttgttttatcactcatagtacttcaagtgtgatttatatcttatacatttaaataaaatttttgaataagacgaatgttcaaacatgtgagaaaaagtcaacggcgtcatctattaaaaaacggagggagcatgtacgatcaacagccacgtctcctcttattcgtgtgacctatacagttaattgtattgtactctctccgtttcacaatgtaaaactttctagcattatccacattattcatatagatgttaatgaatctagacgcatatatgaatctagattcattagtatctatatgaatgtgggcggtgttagaaagtcttacattgtgaaacagagtattgttttgtgatgattgattaataattcgtgtgcatgcatatgcctgccattaattacttgctttgtgctgcagatgggacgatcacggtgagattggcttctgctccagcaacgtagagattatgttcaatgctgtttacaacacgaccaagcgtatcggcgcaaaggccgcactggtgcagaagcgttgtgtcatcgatcatattgccgagcaagtaagactatatatatatataccctgatcgattgatgcgtgtgtgatatgagttaattatttccagtttaaggtatagtcttggaccggtggctgcggttctgagagtatgcagtacgaagtagaatttaaatccaatcatggatcactagtaaaaaacctctatagatgccggttgggaactggctataggtgccggttttccagccgatatcttttagtccgcgcctttatctcaactttattggtgccggttctaaaaccagcacctatactattaaaaaaaatggcaccaaacactgccgccagcctcctccaccgccctccactgccgccaccaccacctcgccggcacctcgccacgtaggcggcctccacccaacgccgcgctggaggggggaggtcccccgggagagagggggctggctagatccagccctccaccaccgccatcccagcatcagctgccgcgcccgcgcccgcgccagccggccatctccacccacacttatattatatgtgtcggtttttctctagaaccgacacctatatttatattataggtgtcggttctattaaaaaaccggcacctataatatagaaccgatacctttaaaccctataggtgtcggttctattaaaaaaccggcacctatatttttttatggtgcggaggtgggaaaataaccataggtgccggttttgaatgaaccgccccctataaggccggtccctatgagggtttttgtaatagctgattttcctagatatttcaaagccattctatcgtaattaactttattcagtttaactttaacctgatactatatgatagggaaattcagcatactgtgacacacacacatatatataatatatatatatatatacatatatatatatacatatatatatatatatatatatatatatatatatatatatatatatatattatcccttcaaaatttctactatccattgaaaacatagcaatcgataataattttaaggctaaaaggaaaactcccttatatattttagggcccctttattcgtaggaaaaatgtagaaattttagaggattttaatcctatgggaaaaaatcctatgaaggcctttgaaacaaaggattgaatcctatccaatcctttaacattcctatggaatgggtaatcctatgcatattttggaggaaagttagcaagaggtctaacctcttggaacatttcctctgagtctatctctcatctgattcctgcgtttttcctgtggtccaatcaaacggccattcctgtgttttacaatcctctattttacaattgtattcctgtcagaattctgtgtttttcctattcctctgttttttcatccctacgattcaaaggggcccttagaggattccaattctataggaaaagttttctatgaagccatttgaaacaaataattgtatcaaattcctatagaatggataatcctatagagattttggaggaaatttagcaagagctctaacttcttggaaactttcctgttgagcctatctctctcatctgatttctgcgtttttcctgcggttcaatcaaacggtcaatcctgtgtttttcctgcgttttacaatcctctatttttcacttacatttctattaaaatctttctttttcctatttctccgtttttttattcctactgttcaaaggccattactgtgtgtcacaattaatatatcttggggtgcagtggcaggtgatggtgagggccatgctgaccgaggcagagtgggcggcgggcaagcacatcccggcaacaatgggggagtacatgtcggtggcggagccgtcgttcgcgttgggccccatcgtccccgtgtcggcgtacctgctcggggaggagctgccggaggaggcggtgcggagcccggagtacggccgtctcctggggctcgccagcgccgtgggccgcctcctgaacgacgtgatgacctacgagaaggagatgggcaccgggaagctcaacagcgtcgtgctgctgcaacctctcgccgccggcggcgccgcctctcgcggcggcggcggcgctccggctccggctccggcgtccgtcgaggcggccagggcggaggtgcggagggccatccaggcgtcgtggagggacctgcatgggctggtgttcggatcaggcggcggcagcagcagcagcatcattccccggccgtgcagggaggtcttctggcacaccgggaaggtggccagcgtcttctaccaggagggagacggctacgcacggaaggcaatgcggagcatggccaacgcggtgattctggagccactgcacctgcaagagtaa</dnaseqindica>

External Link(s)

NCBI Gene:Os11g0474800, RefSeq:Os11g0474800