Os11g0479232

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Revision as of 09:10, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os11g0479232| Description = Gpi16 subunit, GPI transamidase component family protein| Version = NM_001189609.1 GI:297728348 GeneID:9271607| Leng...")
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Gene Name

Os11g0479232

Description

Gpi16 subunit, GPI transamidase component family protein

Version

NM_001189609.1 GI:297728348 GeneID:9271607

Length

5593 bp

Definition

Oryza sativa Japonica Group Os11g0479232, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 11

Location

Chromosome 11:18592931..18598523

Sequence Coding Region

18594158..18595456

Expression

GEO Profiles:Os11g0479232

Genome Context

<gbrowseImage1> name=NC_008404:18592931..18598523 source=RiceChromosome11 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008404:18592931..18598523 source=RiceChromosome11 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggatcctccattccccatctgtttattaactttctaccgccttcaaagaatgtcctgggttactgttaacattatgctgtgcttcctaaaccaggtccaacaatttcatattagtgaattggagctatctttcacacaaggtcaatggaattatgagcagtggggtggatatgacccaatgtcgaccaattatgcaaagcctcctggtgttgagctgtgggcagcttttgaccttcctttggatgagattgatgccacatggaagaacctgacacacacactctcaggcctgttttgtgcatccattaactttttagaatcatccactgccttttctgctcctcgttggggattcaaattgaatgaagggaatctaagatatggtgcattgcctcgtgaagcggtgtgcactgagaatctcacaccttggttgaaacttcttccttgtcgtgacaaagctgggatagcttctttgctgtacaggccttcaatatataaaggatattaccattcccaaaaactgaaattgacatcatctcaatcttttggtattattatcgatcagacattgacagtggttctgcagccggatactttttggggtcagcaactacattctactgatggacaactgcagcccagctggtccatgaaagatctgtttaacaggaagttatcaggaaaatgccgtgtctccaaatcgagcagagtatttttagagattgagaacgatatagttgacaaatctggaactgaagcttcttggactaatgaactctttgtgctgtcaactgccccagacagggtgctcaaggaattaaataacatggatgcccaatcttcttctctatatgaatatgatgttagtaactacaacaatgataagcctttggatgttggcataacctggaaacttcccctcatatggtcttgcacccctgcaccgtatcatgcaaacagatttctcatgggtagtggaaatgaaagagggtcgattgctctgtcatttagatccactaatttgcataagcagttatttggaagctcaaatgattgctcaataaaagctgtagttttccaagttgttccatggtatgttaaggtttattatcacagcttacaaattttcattgatgggaacagtaaggctatttcagaagtagttgagaagattcatgtcactccttcagaagacaaacatttacctggtactctagagatgctactaagattaccttgcagtatggaatcagctaccctgtcgctggactttgacaaggtttgttctgctacttaa</cdnaseq>

Protein Sequence

<aaseq>MDPPFPICLLTFYRLQRMSWVTVNIMLCFLNQVQQFHISELELS FTQGQWNYEQWGGYDPMSTNYAKPPGVELWAAFDLPLDEIDATWKNLTHTLSGLFCAS INFLESSTAFSAPRWGFKLNEGNLRYGALPREAVCTENLTPWLKLLPCRDKAGIASLL YRPSIYKGYYHSQKLKLTSSQSFGIIIDQTLTVVLQPDTFWGQQLHSTDGQLQPSWSM KDLFNRKLSGKCRVSKSSRVFLEIENDIVDKSGTEASWTNELFVLSTAPDRVLKELNN MDAQSSSLYEYDVSNYNNDKPLDVGITWKLPLIWSCTPAPYHANRFLMGSGNERGSIA LSFRSTNLHKQLFGSSNDCSIKAVVFQVVPWYVKVYYHSLQIFIDGNSKAISEVVEKI HVTPSEDKHLPGTLEMLLRLPCSMESATLSLDFDKVCSAT</aaseq>

Gene Sequence

<dnaseqindica>1228..2526#aaaccacgccgccgcccaaaccccccacctcgccggcgctaatggcggcgccgccgccggctctccgccgtctcctcctcctcctcctcttctcgctcctcctcctcgcatccgtagcagcagcggcggcagcgccggcggccgaggaggaggagttcacggaggagctgctcctgcgcccgctccccgaccgcaaggcgctggcccacttccacttccgctcctccgcgtcgccctccgccgccgccgccggacgccaccaccacctcttccccaaggccatcgcccagctggtacgtgcacccccgtgttctcccccacactgccccagtagatatagatctcgcgactggtcactggacctaggaagttagggttcgatggttagtggtcgttcgaattgggtgaattggccgtgcggagctgtagaatcaggtgatactagacggggttagagcaattggctcgttttttatgcgcagcaacggtgaggtgtagcaactcctgtagagatttttcagttgattcactgtagttgggactcgacgaggatattcactgctgtatgcataatgctgactatctcaggcacaattttgtattggatcactttatttgttttgtaaaacaatggcttcatgatattttgtgttccaatcgactcaatctgttttgccgtttggactttggttttcttgagtcgtctgtaaaacacatggtgtctaaactgcaatattgaaagtgttggtatgagtaggaaccataaattagcacaaagagaatgtgtccccagaggaccaggatagcaaagctacaaagcaaacttattctttatattaacagttttacattgttttcgataaatgttatgatggataagtaaaaaaacactatttaatgcagattttgtgatatatcagcacttcctaatatgaaaaacaagtctttgagaactatttttagaacaataaaacgatgagataatactgaatcatgaagatctgtgtagcatatgtcccctgtccatagttgcatgtagctaataatagatactactattaactaacgttctgtaatgtgctattgttcagattactaagatttccttaatgtgctcatgctctctaaataaccaacctaaatatcccttcatatggattctctatgctattggatttatatcaagtaaaaccataataattttgttccttctgtcacatcagaagaatggatcctccattccccatctgtttattaactttctaccgccttcaaagaatgtcctgggttactgttaacattatgctgtgcttcctaaaccaggtccaacaatttcatattagtgaattggagctatctttcacacaaggtcaatggaattatgagcagtggggtggatatgacccaatgtcgaccaattatgcaaagcctcctggtgttgagctgtgggcagcttttgaccttcctttggatgagattgatgccacatggaagaacctgacacacacactctcaggcctgttttgtgcatccattaactttttagaatcatccactgccttttctgctcctcgttggggattcaaattgaatgaagggaatctaagatatggtgcattgcctcgtgaagcggtgtgcactgagaatctcacaccttggttgaaacttcttccttgtcgtgacaaagctgggatagcttctttgctgtacaggccttcaatatataaaggatattaccattcccaaaaactgaaattgacatcatctcaatcttttggtattattatcgatcagacattgacagtggttctgcagccggatactttttggggtcagcaactacattctactgatggacaactgcagcccagctggtccatgaaagatctgtttaacaggaagttatcaggaaaatgccgtgtctccaaatcgagcagagtatttttagagattgagaacgatatagttgacaaatctggaactgaagcttcttggactaatgaactctttgtgctgtcaactgccccagacagggtgctcaaggaattaaataacatggatgcccaatcttcttctctatatgaatatgatgttagtaactacaacaatgataagcctttggatgttggcataacctggaaacttcccctcatatggtcttgcacccctgcaccgtatcatgcaaacagatttctcatgggtagtggaaatgaaagagggtcgattgctctgtcatttagatccactaatttgcataagcagttatttggaagctcaaatgattgctcaataaaagctgtagttttccaagttgttccatggtatgttaaggtttattatcacagcttacaaattttcattgatgggaacagtaaggctatttcagaagtagttgagaagattcatgtcactccttcagaagacaaacatttacctggtactctagagatgctactaagattaccttgcagtatggaatcagctaccctgtcgctggactttgacaaggtttgttctgctacttaaatttacttgtttcccctttgtgttttatttagtgatatatagaactaaatgttgaccttggtcttatatttacatgaatgcatatttcaggggtttctgcatatcgatgaatatcctcctgatgctaatcaaggatttgacatcccatcagctttggtaacatttcctgagttcaattctagccgaagttatcctgaaggtgatacattatttgtgtcacctttgctacaaacgttcaaggtatatcttgtgacttgactaatagtatcagaagcaaaagcaaaaagactaccatgtgaactgaaatgacatgcttcaatacttactgattgcgatattgttataacttgaaggaagatggcgtggtcaagtcatatacagaagtattgcttgttcccttgacaactcctgatttcagcatgccatacaatgtcatcaccttcacttgcaccgtcttagcactttattttggttcactacttaatgctttgagacgacgaattggtgaagaagagagggaattgaaaaaagcaggtaattttactactttgttcatttggttaccttttcacaatgccctgagttcatgacttcttgtgttctttgatctggttggtgatattgtttacttggatgttcgatctgaaatataaaattacaagttagtgctctattcgcacaacaattagtatcatgcggatggacaatggcagtattttgcttatgactggaacatagatttagtgttctactcacgtatgaaaggggtatgagttaggatgagttttttcaggtgttaagacaactcacactatgaattgcacaagcaatattcatacttatatgaagattatattttatgcaggatgtacagagaaaaaaaacatttggtttatttggtattgcctagtaataatttaatgatcttgataaatttagtgttctccaagagttcttttgttttagcatttggtgagagttcataaatttgctatggaaaagtcagcagattaatatagttatcaattgttctgtttactagctgaagtgctgaaccatattacactgcactatctttcttattttcgactagagtgcttctaggatattttatagtttgtgctagataatgacttctcagaattcatataagatagaaataaatcaatgtgatgtgctgaagaaaacaaagagaagattccttctatgcaatcgaatgttgtcttgatcccttgtccgctattgaaaaacatttgccatccttatatgccactggaattcaattttcatcccttgtgggttgccagctgtccatgtcctgtcaccatgctgttaactgaacaaggaaaatatcaaaacatgtcttcctctgccgccacctcattccccaccttgcctcctgctattgtgccggctgccgtctgagccctgttttctgcccccaatctccgccaagtagatcactgctgtcactgagatggattcttggatgcaacacggcccatcaatctctgcctgtgcattcctttgtcctttctgccactcccaaacctttcactcttactttggactgagcagacagcataagtcaacaaaaaagaaatcctcaaggcccctttctcatccacagtgtggatcatgccaaaatgacaaattatactgattgtacccaaatcagctggattctcatcattagctatgtcctgacaaggcagagattattcatgaagttcttcactcctatacatgccggtaaacatctaaagaaccacaaactctaggcttgtgcaggttcacaaaagtgctgggacatcttgacactacttccactagcatcaacctccacccgtccaccaagctgctcctctgcagccaggagcaagctggacttaagttcagcctgtcaagggcatgtcctctttatctctatagctacctgaggtaagtcaacagaagaaggcaacagtacctgttagaaaaaactaacatatcctttttaaggggttatggcaacttatgtaatggtcctacaagaagtggcatacaagagaagttctcctgcggcaaataattgattgagataacccttgatggcatagaaggaatttagtttgaagaaaacatggtttagaaatgcttgtgtttgggtgattacattattcgctgctttaacagatacatgctgttttaaacaatacatggtctggcaaatataaagttgaccatttaattttgtaataaataggaaacaattatagaattacacctttctctggtatctgttcaatcaattcttgtcttcttttgatttgatttgaaccattctctctggattctggagttacatttcaatatagccattgtggagcggagtttcattaggtgtaattttcaggttgttttttcttcagttctcttgtctcagttttcaagactatccttgtgttttgatgtagcgcaggaaaaatcagtttataatagcttgcctggccaaaaattcacaagtattggttattatgttgtggcattgagccatccatctgttgcttctggcactggatatcaagaataaaattatttttgctgcaccattggccctatcatctgatcttctgtagttcttgatcttcatacactttctacacatgaacaactttttagtacataccgtttgttacggcttgtatcactatcatcatgttgttgttttgggtgctgcattactacactactattgtggttataatcgacttctcagatttataaatttcaactcaccaatctcgatcttactacagccgcgaagcgtgggctgattcctctgttgatagccaagctaagggggaagaaggtcgacccaccaccacaaggatcttcacctacatctctgttgtcaacaaagctgctactcaaggttgtatttgtggcggtagtagctgtctcacttcattacttgtcaaacagttgaggattgatgccattgtgtacaattttgagcaatgtccaaaaccacggctgtagattgtattgatcatttcgtttatgtatcatatattatatcgactgt</dnaseqindica>

External Link(s)

NCBI Gene:Os11g0479232, RefSeq:Os11g0479232