Os11g0479300

From RiceWiki
Revision as of 09:10, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os11g0479300| Description = RabGAP/TBC domain containing protein| Version = NM_001074426.1 GI:115485500 GeneID:4350509| Length = 5381 bp| Defin...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os11g0479300

Description

RabGAP/TBC domain containing protein

Version

NM_001074426.1 GI:115485500 GeneID:4350509

Length

5381 bp

Definition

Oryza sativa Japonica Group Os11g0479300, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 11

Location

Chromosome 11:18601343..18606723

Sequence Coding Region

18601965..18602041,18602718..18602829,18603037..18603189,18604494..18604577,18604665..18604793
,18605085..18605264,18605777..18605893,18605988..18606152

Expression

GEO Profiles:Os11g0479300

Genome Context

<gbrowseImage1> name=NC_008404:18601343..18606723 source=RiceChromosome11 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008404:18601343..18606723 source=RiceChromosome11 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>acatgggggagctgcggaggctcgcctgcctcggcgtgccggacggcggcgccgccgtccgcccgctcgtctggaagtgtgcagcttctgttgggatatctgccaactgagcgtgctttttggcctcatgagctagaaaagaagcggagccagtatagtgcatataaagatgaatttctcctaaatccttcagaaaaaatacggagatttgaggagtcaaagttgctaagaaagaaagaattaaatagtgacaaaattggccttctaccaagagccaaagttactaatgaagagcaccctttgagctttggtaaatctagcttgtggaatcaatacttccaggaatcagaaatcctggaacagatagatcgagatgtgaaaagaacacatcctgaaatgccgtttttctctgccaaggctaaccaggaatctctaaggcgtgttctcattatcttctcaaaattaaatcctaccataagatatgtgcaagggatgaatgaagttttggcacctcttttttatgtgttcaagaatgaccctgatacaagcaattcagcctcagctgaagcagacactttcttttgctttgttgaattgctcagtggctttaaagacaactactgtaagcatcttgacaacagccaagtgggtattcggtctacactttcaaagttgtctcagctcttgaagagacatgatgaagagctatggcgacatatggagatcactacaaaggtatatccacaatactatgcatttagatggatcacactactgttgacaatggagttcagcttcaatgtgtgtattcacatttgggatgctatcttgggtgatccagaaggtcctccggacacgttgctaagaatatgctgtgccatgctcatccttgtccggaggcgcctcctagctggagacttcactgccaacatccagctgctgcagcactatccaccgactaacatcgaccaccttcttcacattgctaaccgactaagaggaagcgtagccagctag</cdnaseq>

Protein Sequence

<aaseq>TWGSCGGSPASACRTAAPPSARSSGSVQLLLGYLPTERAFWPHE LEKKRSQYSAYKDEFLLNPSEKIRRFEESKLLRKKELNSDKIGLLPRAKVTNEEHPLS FGKSSLWNQYFQESEILEQIDRDVKRTHPEMPFFSAKANQESLRRVLIIFSKLNPTIR YVQGMNEVLAPLFYVFKNDPDTSNSASAEADTFFCFVELLSGFKDNYCKHLDNSQVGI RSTLSKLSQLLKRHDEELWRHMEITTKVYPQYYAFRWITLLLTMEFSFNVCIHIWDAI LGDPEGPPDTLLRICCAMLILVRRRLLAGDFTANIQLLQHYPPTNIDHLLHIANRLRG SVAS</aaseq>

Gene Sequence

<dnaseqindica>623..699#1376..1487#1695..1847#3152..3235#3323..3451#3743..3922#4435..4551#4646..4810#ctctcttccccgcaccttcccttcccctggccacacctgccgctccagatctgcgcctccgcctcccccacgtcacgacgccgccgccgccgccgccgcacgcgcggccgtcgcgtcgctagctaacctccccttctagagccttctagacgcttctcccgatgcggaagaagccggcgagggcggtgccggagtggctcaacagcccgctctggtcggccccgccgccttcgtcttcgtcgccgtcgccgcccgtgccccccgacccctacggcgccgacctctccccgcccccgcctcctccgcccaagccgccgccgaccgtcccgcccccgtcgtacgagcaggcggtggggtcgtcgaggagggcgaggagcgaggcggggtgggaggaggaggaggaggaggatggggaggtcgggggtggggccgcgctccgggcgcacctgctcgccgacttcaagctcgcggtgggtgggtgggtggtgacgaggggagggggggttttggtttggatgaggggattggaatttcgcggtgaagtacgaattggggggtgtttggaatttccattttctgatcgtgtgttgttggggtttgcagctgtcgaagaaggtggtgaacatgggggagctgcggaggctcgcctgcctcggcgtgccggacggcggcgccgccgtccgcccgctcgtctggaaggtcccccacccgcattctcttctactctgctgctgcactactttttgttgtttctcggtacatatttgtttggggactctaccgtgagcaagcacggacaggcggacagcatagaacagtttcattaaaacgaaccatttctgcttcccggcatggtattatggaagtgattatgtttccagtgtggagacgctgaaagaaagtaatccatttccatgtctagtgtagattttgcctcaaataaacatccattattcaattttcaataatgagctttagatgggtactaattttcaagagtgaactttagaaggatactggttttttacttttaagtaccttgaactagttacctatggcatgggaacaaaaaggaattggtctgtattattggtgcgtatccctatcctgtttgccaattctcatatcatgcaatcacatgaccatctgaaattgctctatttcccaatctaatatgtatattgaataagtatgtcttgtaactataactacatcaagtttaatgcccaagtggtataggaaaatgaccactttcagcatattatttgttatttatgatctattgatggtttctaaattagcttttaacaagaaccgtgctatgtggcaacctccatagttcatacacaagaaatttattctattatatttatagtgtgcagcttctgttgggatatctgccaactgagcgtgctttttggcctcatgagctagaaaagaagcggagccagtatagtgcatataaagatgaatttctcctaaatcctgtaagttatgattgcccctctaaaatatttattaaattatcaatgaagatttattagtccaaaagactttttttattatcctttgtaaggcattttaagccttgtttggctaggccaaaaccctggtccatacctggagattttggccttgcgaaacaaggcgtcaattggttgtgtatgaatacactgatattttcttttgaccagtcagaaaaaatacggagatttgaggagtcaaagttgctaagaaagaaagaattaaatagtgacaaaattggccttctaccaagagccaaagttactaatgaagagcaccctttgagctttggtaaatctagcttgtggaatcaatacttccaggtattacttattaccatcttaaataaatctgcaaggcttgttgggaacccatggttgccagctggttccttcacgtgtcttaactcttatggtcccttcaagacctgaattgtgtttagttaatctgaaacattataatgtatttactttatgagaaattgtttggactgcttttaagttgtttggtggttggtattatgagtttgtctttgctcatgatgatcgttatatctagatatggaatcttaatttcttatcctcattctcattataatctttaattctttctagttaaattgctggtaggtacagtttcttgttattgttatttttctgatctggctgtgggatttttaatagtatttgcataacatgtggtctgtgaggtgtgtacagtccccagtatttcccaccagtctgtggtcattgttcttttcactaggttttgattttgttctgttcggtatgttggggctcatattaagttcccacattgcatttgttgtccgtcttcagaattgcgtgcctttcactggacctagttttgtgtaacacctcagcttctgagatctacattagctcatctcttccttaggagcaagccccacatatgcatagcaccccactttgacacttttctcattgttgctgtataaaatggttaatctggaggtgccatggttaaaacatttgagcttatttattgggcccaacctatctaaactcctcttgtgagactaatcctactaatacaacaccatgggccacacggccctctactaatggtcagggtattacattttgtttatgcactgttgtgaaaagctaaggacaagcactctctcgatttttatttacatgatgtttttgggctttgtcatagtccaagatgtagctttgaccttaattgtaatttttttatgttaatactaagtgtttgtaagtatttctaatagcaaatgtaatgataatttttttaatcaccattctatatattcataacatatggaggatcaattttagaaagtttagtttcatggattttgattttaggatgcaagtaaaaataaatgaagggaatatattgcaaggaaagaggaaagtgcacaactgtttagtccttctgaattctgtattgagcgatgcgaaaacatttatgttttctcgcctatgtgtttgatatgcactgaacatttatgttctgtatagtctagatgttaattattaaacatggttttctggcatggcagccacaagatttcatttgttctttttcttatattctgataaatgtaaatttacaggaatcagaaatcctggaacagatagatcgagatgtgaaaagaacacatcctgaaatgccgtttttctctgccaaggctaaccaggtttcacttcagtgccttggaattccttatttccatttaaactacaagtaattgtcatttggactaaatttttcaaacacatttcaggaatctctaaggcgtgttctcattatcttctcaaaattaaatcctaccataagatatgtgcaagggatgaatgaagttttggcacctcttttttatgtgttcaagaatgaccctgatacaagcaattcagtatgttcttttactatttgatcacatggttttaaatggaacgtttgaatgttgacaaaggaggaatttatctatcataaggatatctatctgcttttctctctcgctcattacatggaacacaaaaactttattgtggatattttgagtttctaaaatcaacactaaatgaattctttctggagaattagaatagctcatttatatgaatattaattcacaacttggtctgttttatgattggttctgaaatgtgttcattagctgaaccattcagttttggaattacaggcctcagctgaagcagacactttcttttgctttgttgaattgctcagtggctttaaagacaactactgtaagcatcttgacaacagccaagtgggtattcggtctacactttcaaagttgtctcagctcttgaagagacatgatgaagagctatggcgacatatggagatcactacaaaggtagggaatattcagtaatatatttcacagactgcaaaatctactgtagcatgcatgctgagaaagtgcacatggaattgcacccagaaaaacttgtcatgttatttgttcaatagctaatattggacatcttactatccgtaatgtcacctcttctcacttttccacaatttagggttaattaacctatggctatttgaagtcatgccattacaatttgccattacaatggcatagatccaattaacccttctattttattagcttgtcctaagtgaaaatgctagtattaccactggaaaggaacaggaactggtctattttctcgcattgtacagttaaagttgctcttatttccttgtcaatttaacagtatgttactgttttaggtttatcttctgaacaagatactaatattgatagcctgctatattgtttttgtgggtaaatttagtcactctggtatgtcacccaccattgttgatagtcatgcatggatattgaaaatacaggtatatccacaatactatgcatttagatggatcacactactgttgacaatggagttcagcttcaatgtgtgtattcacatttgggatgctatcttgggtgatccagaaggtcctccggtatgtaacctctggactaagcctccaaactaggtttgcagccatgttacttgtacaactgcagggggctaatgctttgcatgttcttgtgcaggacacgttgctaagaatatgctgtgccatgctcatccttgtccggaggcgcctcctagctggagacttcactgccaacatccagctgctgcagcactatccaccgactaacatcgaccaccttcttcacattgctaaccgactaagaggaagcgtagccagctagcgatacattctcattttctgcatatctgtacctcgatcttgtctttgtggtggcgttcatctgatcatattgtgaacttggcaatgtaggtagctgtgtttatcccattttggtgtgggtgtggctggcaatgtggttgtagaagagagcgttgaggccctagatgcatttcttgttgtgtttacattagaaacatctcccctatgtggaaaaagcatcagttttacatgttccgtatgaaaaatgttgtgttggatgtgttacttggtagactatacagatgagggaggacttaggactagtaggaaagagctatggttaggccacctcataaacaaatcaatagttttcagagttttagccattagttatagctgtcaatgtttggataaaattcctacttcctcagttttcttggcctctgtcgcatttgtaactgaaattcgtactgtaaacattgaaaaaaaaatcgaggtaaaatttgtaggtttggctcgagtttctttgaaattcgtgtttgtattaactctttacttgaaaggaaatgctaatatgactatgaaatactagc</dnaseqindica>

External Link(s)

NCBI Gene:Os11g0479300, RefSeq:Os11g0479300