BGIOSGA003899

From RiceWiki
Revision as of 10:58, 26 June 2012 by 127.0.0.1 (talk) (Created page with "{{IndicaGene| GeneName = BGIOSGA003899| Description = Putative uncharacterized protein| Definition = Oryza sativa Indica Group BGIOSGA003899, complete gene.| tag = B1103C0...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

BGIOSGA003899

Description

Putative uncharacterized protein

Definition

Oryza sativa Indica Group BGIOSGA003899, complete gene.

LocusTag

B1103C09.23

Ensembl Transcript ID

BGIOSGA003899-TA

Ensembl Protein ID

BGIOSGA003899-PA

Length

2090

Source

Oryza sativa Indica Group

 ORGANISM  Oryza sativa Indica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:25989947..25992036

Sequence Coding Region

25989947..25990930,25991028..25991171,25991656..25992036

Genome Context

<gbrowseImage1> name=IndicaChromosome01:25989947..25992036 source=RiceIndica01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=IndicaChromosome01:25989947..25992036 source=RiceIndica01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>ATGGACGACATCATGCGGGCCATCTTCGCCTGCATCCCCGGCATGCGGTCACCCGCGTCGCCCGGCGGCTGCCTCTCCGCTGCCTTTGGCGGCGGGGACGACGACGGCGAGGAGGGGGAGGGGGAGGGGGAGGACCGCATCAGCCGCCTCCCGGACGCGGTGCTGTCGAGCATCGTCTCCCGCCTCCCCGTCAAGGACGGCGCCCGCACCGCCGTGCTGTCCCCGCGCTGGCGCCGCGTCTGGGCCTCCACGCCGCTCGTCCTCGACGACGCCGACCTCCTCCCCGACGACGACGGCCCCCAAATCTTCTGGCGCGACGTCGCGGACGCCGTCTCCCGCGTCCTCGCCGCGCACCCGGGCCCGTTCCGGTGCGTCCGCCTCACGAACGCCTGCAGCTACGCGGGCTCCCGCGGCGCCGCCGCGCTCTCGCGCTGGCTCGGCGTCCTCGCCGCCAAGGGCGTCCAGGAGCTCGTCCTCGTCTTCCTCCACGCCTGGCCGGTACGGGTCGAGCCCCCCGCCGATGTCCTCCGCGTCTCCTCCCTCCGCCGCCTCTACCTTGGCCTCTGGAGGTCGTTCCCCGACACCGAGCACCTCCGCCCCGGCGCCGACGTCTTCCCCAACCTCGTCGAGCTCGGCATCTGCCGCACCGACATCAAGGCCAAGGACCTCGACCGCCTGCTCCAGTGCAGCCCCGCGCTGGAGACGCTCGCGTTCGTCGTCAGCTACAACACGCAGCCCAACGTCCGCGTCCGCAGCCGCAGCCTCCGCTGCGTGCTCTTCTGGATGTCCATCGCGGAGGAGCTCGCCGTGGTCGTCGCCCCGCGGCTCGAGCGGCTCATCCTGTGGAACGGGTGCCCCTGCACCCGCCGTGTCCGCCGTGATTTCCGCACCAGGGTCAAGATCGGCTACACCCCAGAGCTCAAGGTGCTCGGCTACTTGGAGCCAAGAATCCACGTGCTCGAGATCGCCAACACCGTCATCGAGGCTGGGACAAAGCCGAGCCCTGGCACCATGGTTCCAACTGTCAAGGTCCTGGCTATGAAGGTTCGATTTGGAGTTCGACAGGAGGCCAAGATGCTGCTCTCCTTCCTGAGATGCTTTCCCAATGTCGAGACGTTGAATATCATGTCTGCTGAAGCTGATGAACCCACTGGCAAGCTCAACTTCAAGTTGAAGTTCTGGCAGGATGTTGCCCCTGTTGAATGCCTCAAGGCACACATCAAGAAGGTGGTGTTCAAGAACTTCCGCGGAGAGCGAAGCGAGCTTGCGTTCCTCCGGTTTGTCTTGGAGAGAGCCCAGATCCTTCAGACATTGGTGGTCGTGTTGACTGATGGAGATGGAGATCACGCTTCGCAGGAGGAGCTGGGTAACAGGCTGAAACCTCTGATTTACAGCACACATCGTGCCAGTAAATGCGCAGAGTTTTTCATCTTTGTGCGCTGTGGAGGCACCTCCTGGAGCTTCCGAACAGCGTCTGATCTCTCCAGGAGTGACCCTTTTGACTGCTGA</cdnaseq>

Protein Sequence

<aaseq>MDDIMRAIFACIPGMRSPASPGGCLSAAFGGGDDDGEEGEGEGEDRISRLPDAVLSSIVSRLPVKDGARTAVLSPRWRRVWASTPLVLDDADLLPDDDGPQIFWRDVADAVSRVLAAHPGPFRCVRLTNACSYAGSRGAAALSRWLGVLAAKGVQELVLVFLHAWPVRVEPPADVLRVSSLRRLYLGLWRSFPDTEHLRPGADVFPNLVELGICRTDIKAKDLDRLLQCSPALETLAFVVSYNTQPNVRVRSRSLRCVLFWMSIAEELAVVVAPRLERLILWNGCPCTRRVRRDFRTRVKIGYTPELKVLGYLEPRIHVLEIANTVIEAGTKPSPGTMVPTVKVLAMKVRFGVRQEAKMLLSFLRCFPNVETLNIMSAEADEPTGKLNFKLKFWQDVAPVECLKAHIKKVVFKNFRGERSELAFLRFVLERAQILQTLVVVLTDGDGDHASQEELGNRLKPLIYSTHRASKCAEFFIFVRCGGTSWSFRTASDLSRSDPFDC</aaseq>

Gene Sequence

<dnaseqindica>1..984#1082..1225#1710..2090#ATGGACGACATCATGCGGGCCATCTTCGCCTGCATCCCCGGCATGCGGTCACCCGCGTCGCCCGGCGGCTGCCTCTCCGCTGCCTTTGGCGGCGGGGACGACGACGGCGAGGAGGGGGAGGGGGAGGGGGAGGACCGCATCAGCCGCCTCCCGGACGCGGTGCTGTCGAGCATCGTCTCCCGCCTCCCCGTCAAGGACGGCGCCCGCACCGCCGTGCTGTCCCCGCGCTGGCGCCGCGTCTGGGCCTCCACGCCGCTCGTCCTCGACGACGCCGACCTCCTCCCCGACGACGACGGCCCCCAAATCTTCTGGCGCGACGTCGCGGACGCCGTCTCCCGCGTCCTCGCCGCGCACCCGGGCCCGTTCCGGTGCGTCCGCCTCACGAACGCCTGCAGCTACGCGGGCTCCCGCGGCGCCGCCGCGCTCTCGCGCTGGCTCGGCGTCCTCGCCGCCAAGGGCGTCCAGGAGCTCGTCCTCGTCTTCCTCCACGCCTGGCCGGTACGGGTCGAGCCCCCCGCCGATGTCCTCCGCGTCTCCTCCCTCCGCCGCCTCTACCTTGGCCTCTGGAGGTCGTTCCCCGACACCGAGCACCTCCGCCCCGGCGCCGACGTCTTCCCCAACCTCGTCGAGCTCGGCATCTGCCGCACCGACATCAAGGCCAAGGACCTCGACCGCCTGCTCCAGTGCAGCCCCGCGCTGGAGACGCTCGCGTTCGTCGTCAGCTACAACACGCAGCCCAACGTCCGCGTCCGCAGCCGCAGCCTCCGCTGCGTGCTCTTCTGGATGTCCATCGCGGAGGAGCTCGCCGTGGTCGTCGCCCCGCGGCTCGAGCGGCTCATCCTGTGGAACGGGTGCCCCTGCACCCGCCGTGTCCGCCGTGATTTCCGCACCAGGGTCAAGATCGGCTACACCCCAGAGCTCAAGGTGCTCGGCTACTTGGAGCCAAGAATCCACGTGCTCGAGATCGCCAACACCGTCATCGAGGTCTTGCTTGTATATATGCTTTGTAATTTTGTGTGTGTCTAGTGATTCATGGCATTGTGAATTGTGTTCTGATTGCGAATTGCACATGAAACTATAGGCTGGGACAAAGCCGAGCCCTGGCACCATGGTTCCAACTGTCAAGGTCCTGGCTATGAAGGTTCGATTTGGAGTTCGACAGGAGGCCAAGATGCTGCTCTCCTTCCTGAGATGCTTTCCCAATGTCGAGACGTTGAATATCATGGTGAGATCTCATCCCCTATTCTCCTCATCCAGAGTTCCAGACATTTGCACCATCTATTGGGGCTGATACATTGCTGCTACATGAAATCCGTGGATTATCAAACTTAGGCCTTGTTTAGTTCGCGAAAAGAAAAATTTTGGATGTCACATCGGACGTTTGACCTGATGTCGGAAGAGGTTTTCGGACACGAATAAAAAAACTAATTTCATAACTCGCCTGAAAACCACGAGACGAATCTTTTGAGCCTAATTAAGCCGTCATTAGCACATATGGGTTACTATAGCACTTATGGCTAATCATGGACTAATTAGGCTCAAAAGATTCGTCTCGCCATTTCCATACAAACTGTGCAAGTAGTTTTTGTTTTTATCTATATTTAATGCTCCATATATGTGTCTAAAGATTTGATGTGACGGTTTTGGGAAAAAAAAATTGGAAACTAAACAAGGCCTTAACTAGCTACAACATGCTGATGAATCTGCAGTCTGCTGAAGCTGATGAACCCACTGGCAAGCTCAACTTCAAGTTGAAGTTCTGGCAGGATGTTGCCCCTGTTGAATGCCTCAAGGCACACATCAAGAAGGTGGTGTTCAAGAACTTCCGCGGAGAGCGAAGCGAGCTTGCGTTCCTCCGGTTTGTCTTGGAGAGAGCCCAGATCCTTCAGACATTGGTGGTCGTGTTGACTGATGGAGATGGAGATCACGCTTCGCAGGAGGAGCTGGGTAACAGGCTGAAACCTCTGATTTACAGCACACATCGTGCCAGTAAATGCGCAGAGTTTTTCATCTTTGTGCGCTGTGGAGGCACCTCCTGGAGCTTCCGAACAGCGTCTGATCTCTCCAGGAGTGACCCTTTTGACTGCTGA</dnaseqindica>

External Link(s)

EnsemblPlants:BGIOSGA003899