BGIOSGA004003

From RiceWiki
Revision as of 10:59, 26 June 2012 by 127.0.0.1 (talk) (Created page with "{{IndicaGene| GeneName = BGIOSGA004003| Description = cDNA clone:J013110L15, full insert sequence| Definition = Oryza sativa Indica Group BGIOSGA004003, complete gene.| ta...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

BGIOSGA004003

Description

cDNA clone:J013110L15, full insert sequence

Definition

Oryza sativa Indica Group BGIOSGA004003, complete gene.

LocusTag

OsJ_02628

Ensembl Transcript ID

BGIOSGA004003-TA

Ensembl Protein ID

BGIOSGA004003-PA

Length

3090

Source

Oryza sativa Indica Group 

 ORGANISM  Oryza sativa Indica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:27660703..27663792

Sequence Coding Region

27660703..27661079,27661550..27661656,27661760..27661815,27661905..27662129,27662214..27662420
,27662500..27662586,27662674..27662769,27662843..27663058,27663251..27663433
,27663565..27663792

Genome Context

<gbrowseImage1> name=IndicaChromosome01:27660703..27663792 source=RiceIndica01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=IndicaChromosome01:27660703..27663792 source=RiceIndica01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>ATGGCCGCCGGCGACCTCCTCCGCACCCAGAGCGGCCTCCCCGTGCTCGCAAGGGCCTTCCCCAGCTGCCTCTGCCTCCGCGTCCCTGCCCGCCGCCGCCGGGGCGCTCCTCCCCTGACCGCCGCCAAGGTCGACGTCGCCGACGCCGTCGGCCGCCGTGTCAGGTCGGGCGGCGCGGCCGTACCGAAGCGGCGTCGTAGCCGTAGGGACGCGGAGGAGGAGGAGGAGGAGGGCCTCGCGTTCTCGAGGGTGGTCACGGGCAGGGGAAGAGGCGTCCGCGAGGAGGGCGTGGCGGAAGGGGAGGCTCCGGAATTCGATGCGGCGAAGAGCGGTGACGAGTCGGGAGGCGTGGATGGCTCGTACCTCAGCGACACAAGGTTTGATCAATGCGCTATTTCTCCGTTGTCACTGAAAGCCGTCAAAGATGCTGGGTATGAAAGGATGACCCAGGTGCAGGAGGCAACTCTGCCAGTAATCCTTCAAGGCAAAGATGTTCTTGCAAAAGCAAAGACAGGAACTGGGAAAACTGTTGCCTTTTTGCTTCCAGCCATTGAAGTTCTCTCCGCATTACCTAATTCTCGGAGGGATCAACTACGTCCATCTATAAATTTGCTGGTGATGTGCCCTACTAGGGAGCTTGCAATCCAAGTGGCTGTTGAGGCCAAGAAACTTCTCAAGTATCACCGCTCGCTGGGGGTGCAAGTTGTAATCGGTGGCACACGATTAACCCAAGAGCAACGAAGCATGCAAGCTAACCCATGCCAGATTCTTGTTGCTACACCTGGAAGGCTTAAAGACCATGTTGAGAACACACCTGGTTTTTCTACCCGACTAAAAGGTGTGAAGGTTCTTGTTCTTGATGAAGCTGATCGCCTGCTGGATATGGGATTCAGAAGAGACATTGAGAGAATAATTGCTTCCGTTCCTAAAGAGCGACAGACATTGCTATTTTCTGCTACTGTGCCAGAGGAGGTCCGCCAAATTTCTCATATTGCAATGAAGAAGAATTATAAGTTCATTAACACTGTTAAGGATGGTGATGAGGAGACACATGCACAGGTGAGTCAGATGTTCATGATCGCGCCACTAGATCTGCACTTCTCTATCTTATATGATGTATTGAAGAAGCATGTTGCAGAGGATGCAGACTACAAAGTGATTATATTCTGCACTACTGCGATGGTTACCAAACTTGTCGCTGAAATTCTTTCCCAACTGAGACTGAATATAAGAGAGATTCATTCCAGAAAGTCACAATCTGCCAGAACTAAGGTCTCAGATGAATTCAGGAAGTCAAGGGGTCTGATATTGGTTAGTTCTGATGTATCTGCCCGCGGCGTGGATTATCCTGATGTCACCCTTGTCATACAGGTTGGGGTGCCAGCTGATAGACAGCAATATATACATAGACTTGGTAGAACTGGACGGAAGGGAAAGGAAGGGCAAGGCCTATTACTGTTGGCTCCATGGGAGAAGTACTTTCTTAGTAGCATTAAGGATTTGTCAATATCAGAGGCTACGGTACCTTCTGTTGATTCAAGCACTCAGACAATAGTCAAAGACGCAGTCCGGAAAGTTGAGATGAGGAGCAAGGAGTGTGCCTATCAAGCATGGTTAGGATACTACAACTCTAACAAGACCATTGGCCGAGAAAAATCCAGACTTGTTAAGCTCGCAGAAGAGTTCAGCCAAAGCATGGAGCTTTCAGTTCCGCCAGCTATACCCAAGCAAATTCTTCGAAAGATGGGACTTAACAATGTTCCTGGGCTGAGATCTACATAA</cdnaseq>

Protein Sequence

<aaseq>MAAGDLLRTQSGLPVLARAFPSCLCLRVPARRRRGAPPLTAAKVDVADAVGRRVRSGGAAVPKRRRSRRDAEEEEEEGLAFSRVVTGRGRGVREEGVAEGEAPEFDAAKSGDESGGVDGSYLSDTRFDQCAISPLSLKAVKDAGYERMTQVQEATLPVILQGKDVLAKAKTGTGKTVAFLLPAIEVLSALPNSRRDQLRPSINLLVMCPTRELAIQVAVEAKKLLKYHRSLGVQVVIGGTRLTQEQRSMQANPCQILVATPGRLKDHVENTPGFSTRLKGVKVLVLDEADRLLDMGFRRDIERIIASVPKERQTLLFSATVPEEVRQISHIAMKKNYKFINTVKDGDEETHAQVSQMFMIAPLDLHFSILYDVLKKHVAEDADYKVIIFCTTAMVTKLVAEILSQLRLNIREIHSRKSQSARTKVSDEFRKSRGLILVSSDVSARGVDYPDVTLVIQVGVPADRQQYIHRLGRTGRKGKEGQGLLLLAPWEKYFLSSIKDLSISEATVPSVDSSTQTIVKDAVRKVEMRSKECAYQAWLGYYNSNKTIGREKSRLVKLAEEFSQSMELSVPPAIPKQILRKMGLNNVPGLRST</aaseq>

Gene Sequence

<dnaseqindica>1..377#848..954#1058..1113#1203..1427#1512..1718#1798..1884#1972..2067#2141..2356#2549..2731#2863..3090#ATGGCCGCCGGCGACCTCCTCCGCACCCAGAGCGGCCTCCCCGTGCTCGCAAGGGCCTTCCCCAGCTGCCTCTGCCTCCGCGTCCCTGCCCGCCGCCGCCGGGGCGCTCCTCCCCTGACCGCCGCCAAGGTCGACGTCGCCGACGCCGTCGGCCGCCGTGTCAGGTCGGGCGGCGCGGCCGTACCGAAGCGGCGTCGTAGCCGTAGGGACGCGGAGGAGGAGGAGGAGGAGGGCCTCGCGTTCTCGAGGGTGGTCACGGGCAGGGGAAGAGGCGTCCGCGAGGAGGGCGTGGCGGAAGGGGAGGCTCCGGAATTCGATGCGGCGAAGAGCGGTGACGAGTCGGGAGGCGTGGATGGCTCGTACCTCAGCGACACAAGGTAATCGCTTGCCTTGCGCCGCAAATTGAGAGTTATCTCTTCCCCTGTAGAAATGGTTATGGTTTGGAACTGTAGAAATGGCGAGTGCTTTATTTATGTAAGAGTATTTTCGAATATGTGGAAATGGTTATGTTTCCAAAACAGAAATGGCGAGTGCTTGTTTCCAGTATTTTCCAGATGAGTAGAGCTTAAAGATTTTAAACGTTGTGTTAGGGAGACGCCAAATCATGTCTGTTCTACTAGAATTAATCAGTTTTCACTAAGTTCTAGCAGCGTGCTGTGTTTGTATAATTATTTATTGCTGTAAACCAACTGTTACTGCCTCCTTCAAGTAGCATAATGCTCATCTGTAAACAATCATTTTGCTAATCCTCGACTAACTAGAATATGAGAAGACTGCTCATCCGATTTGTATAACAGGATTTACAAATGTACTGCTTTCGTAATTTAGAAATGCTATTCATATGCAGGTTTGATCAATGCGCTATTTCTCCGTTGTCACTGAAAGCCGTCAAAGATGCTGGGTATGAAAGGATGACCCAGGTGCAGGAGGCAACTCTGCCAGTAATCCTTCAAGGTCAGGGAAATGGCAATGTTATTGTTCCTAGTCCAGTGAATGATACCAGTATTTTTTGGTGGGAGTCCTGAAACTGAATCTGCAACATTTTGTTCCATTTTAGGCAAAGATGTTCTTGCAAAAGCAAAGACAGGAACTGGGAAAACTGTTGCCTTTTTGGTACTTATCCTAAATCCCAATAAAATTATGGCATTAGTCGCTATCACCTATTAACGTATTGACTAATGAGTTAGAGTATCTTGTTTTAGCTTCCAGCCATTGAAGTTCTCTCCGCATTACCTAATTCTCGGAGGGATCAACTACGTCCATCTATAAATTTGCTGGTGATGTGCCCTACTAGGGAGCTTGCAATCCAAGTGGCTGTTGAGGCCAAGAAACTTCTCAAGTATCACCGCTCGCTGGGGGTGCAAGTTGTAATCGGTGGCACACGATTAACCCAAGAGCAACGAAGCATGCAAGCTAACCCATGCCAGGTTGTACCCATGAACTACAGACAGGTCATATCTTGGATTCTTAGTGCAAGTTATGTATACTAACACTGTGCACTGATCAAACAGATTCTTGTTGCTACACCTGGAAGGCTTAAAGACCATGTTGAGAACACACCTGGTTTTTCTACCCGACTAAAAGGTGTGAAGGTTCTTGTTCTTGATGAAGCTGATCGCCTGCTGGATATGGGATTCAGAAGAGACATTGAGAGAATAATTGCTTCCGTTCCTAAAGAGCGACAGACATTGCTATTTTCTGCTACTGTGCCAGAGGAGGTAAACTCTTTGTATTATTAAGCTCTCTTTATATAAAGTTAAACCTCTAACAAACTATCTTTTGAACGTTTATATTTAGGTCCGCCAAATTTCTCATATTGCAATGAAGAAGAATTATAAGTTCATTAACACTGTTAAGGATGGTGATGAGGAGACACATGCACAGGTTTAGACCTGTCATTTTTTCTTGAGCTTTTATGCTAAATGCTAAAGTTTTGGAGCTCATTAGAACATTGCGCTGCTTCTATATCAGGTGAGTCAGATGTTCATGATCGCGCCACTAGATCTGCACTTCTCTATCTTATATGATGTATTGAAGAAGCATGTTGCAGAGGATGCAGACTACAAAGTAAGTTTCATATCCAAACTGTGAACCTATATCTTGTGGATTATGGATGTGTCATTGTTGTTCAATTTTACAGGTGATTATATTCTGCACTACTGCGATGGTTACCAAACTTGTCGCTGAAATTCTTTCCCAACTGAGACTGAATATAAGAGAGATTCATTCCAGAAAGTCACAATCTGCCAGAACTAAGGTCTCAGATGAATTCAGGAAGTCAAGGGGTCTGATATTGGTTAGTTCTGATGTATCTGCCCGCGGCGTGGATTATCCTGATGTCACCCTTGTCATACAGGTACCTGTTATTATTTCCCCTCACAAAATTCTTCTTGTAAACTGATATTGCTATATTGTTGTTATTTATTTTTCTTTTCTTTATGAATGTTTGGAAAACTATTTCTGTTGACCAAAATATGGCAATGCAAATATGCTTGCAGTTTGTTGTGTTCTGATAAAGTTTTTTCTCCTTGAATATTTGCTCTTGCAGGTTGGGGTGCCAGCTGATAGACAGCAATATATACATAGACTTGGTAGAACTGGACGGAAGGGAAAGGAAGGGCAAGGCCTATTACTGTTGGCTCCATGGGAGAAGTACTTTCTTAGTAGCATTAAGGATTTGTCAATATCAGAGGCTACGGTACCTTCTGTTGATTCAAGCACTCAGACAATAGTAAGTTCATAATCCTCTCATCTATTTCGCCATGCAACATAGGTCAGATCTAGCGCAAATTTTGCAATAGGAAGTCCATTTTTGCCTGCTCAAGAAATCTCAAGTACTCTTGTTTCTGCTTTATTTGATAGGTCAAAGACGCAGTCCGGAAAGTTGAGATGAGGAGCAAGGAGTGTGCCTATCAAGCATGGTTAGGATACTACAACTCTAACAAGACCATTGGCCGAGAAAAATCCAGACTTGTTAAGCTCGCAGAAGAGTTCAGCCAAAGCATGGAGCTTTCAGTTCCGCCAGCTATACCCAAGCAAATTCTTCGAAAGATGGGACTTAACAATGTTCCTGGGCTGAGATCTACATAA</dnaseqindica>

External Link(s)

EnsemblPlants:BGIOSGA004003

Retrieved from "https://ngdc.cncb.ac.cn/ricewiki/index.php?title=BGIOSGA004003&oldid=41727"