BGIOSGA004252

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Revision as of 11:03, 26 June 2012 by 127.0.0.1 (talk) (Created page with "{{IndicaGene| GeneName = BGIOSGA004252| Description = Putative uncharacterized protein| Definition = Oryza sativa Indica Group BGIOSGA004252, complete gene.| tag = OS01G06...")
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Gene Name

BGIOSGA004252

Description

Putative uncharacterized protein

Definition

Oryza sativa Indica Group BGIOSGA004252, complete gene.

LocusTag

OS01G0694100

Ensembl Transcript ID

BGIOSGA004252-TA

Ensembl Protein ID

BGIOSGA004252-PA

Length

6662

Source

Oryza sativa Indica Group

 ORGANISM  Oryza sativa Indica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:31984171..31990832

Sequence Coding Region

31984171..31984762,31988352..31990334,31990423..31990832

Genome Context

<gbrowseImage1> name=IndicaChromosome01:31984171..31990832 source=RiceIndica01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=IndicaChromosome01:31984171..31990832 source=RiceIndica01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>ATGGCTCTTCTCTGTGTGAGCATGGTGCTCCTCATCCTACTGGTACCATGCATCACTGCACAGTCTGCACTCACCTCTCCATCCAACAACACAGACCTCGCTGCACTGCTCGACTTCAAGGCGCAGTGTCAAGGACCCCTAATGGCATCCTTGCCAGCAATTGGACTGCCAGTGCACCCTTCTGCTCATGGGTTGGGGTCTCATGCGACAGCAGCGTGCAAGTGGGTCACTGGGCTTGAGTTTGAAGACATGGCACTTGAAGGAACCATCAGCCCGCAGATTGGCAACCTCTCCTTCCTCTCCAGCCTTGTACTCAGCAACACCAGCCTCATCGGACCTCTGCCAACTGAGCTCGGTAGGCTGCCCCGACTACAAACTCTTGTTCTTTCATACAACAGCCTGTCAGGTACCATCCCTTCCATCCTTGGCAACCTCACAAGGCTCGAGTCTCTTTATCTTAATAGCAACAAAGTCTTTGGGGGGATTCCACAAGAGTTGGCAAATCTTAACAATCTTCAGATTCTAAGATTGTCAGATAACAACTTGAGCGGACCAATACCACAAGGCCTGTTCAATAACACGCCCAACCTGAGTTCTGTGCCATCATGGCTGGCGACAATGCCAAACCTCACTGCAATTTACTTGTCAACCAACGAGCTCACTGGAAAGATCCCAGTTGAACTGAGCAATCATACTGGGCTGCTTGCTTTGGACCTTAGCGAGAACAAGCTAGAGGGAGAAATACCACCAGAGTTTGGACAGCTGAGAAACCTCAGGTATATAAGCTTTGCAAACAACCAAATAACAGGTACCATTCCCGAATCTATAGGCAATCTCTCTGACCTCACCACAATAGATTTGTTCGGAAACGGATTAACTGGATCAGTGCCAATGTCATTTGGGAACTTGCGGAATCTTCGTCGCATCTTTGTTGATGGGAACCAGCTCAGTGGGAACCTTGAATTCCTAGCTGCATTATCAAATTGCAGTAATCTGAACACAATTGGCATGTCATACAATGCATTTGAAGGGAGTTTACTACCCTATGTTGGAAACCTTAGCACACTGATGGAAATTTTTGTAGCAGACAACAATAGGATCACTGGAAGCATCCCCAGTACACTGGCTAAGCTTACCAACCTACTGATGCTATCTCTCAGTGGAAACCAGCTAAGCGGGATGATCCCCACGCAGATCACATCAATGAACAATCTCCAAGAACTCAATCTCTCCAACAACACCTTGTCTGGCACCATCCCAGTAGAAATCAGTGGATTAACAAGCCTAGTTAAGCTGCATCTTGCTAACAATCAACTTGTCGGTCCTATTCCAAGTACCATCGGTAGCCTAAACCAGTTACAAGTTGTGGTATTGTCCCAAAACTCGTTGTCTTCAACAATACCAATTAGTTTGTGGCATCTTCAGAAACTTATTGAGCTTGATTTATCACAGAACTCTTTGAGTGGTTCTCTACCTGCTGATGTTGGAAAACTGACAGCAATTACTAAGATGGATCTATCAAGAAACCAGCTATCAGGTGATATACCATTTTCTTTTGGTGAACTCCAGATGATGATCTATATGAATCTATCCAGTAATCTACTCCAAGGTTCAATACCAGATTCAGTTGGCAAGTTACTAAGTATTGAGGAGTTAGACCTTTCCTCCAATGTGCTTTCGGGTGTCATCCCAAAGTCCTTGGCCAATCTCACTTATCTTGCCAATTTGAACCTATCTTTCAATAGACTGGAGGGTCAGATACCAGAAGGAGGTGTGTTCTCAAACATCACTGTCAAGTCATTGATGGGAAACAAGGCACTATGTGGCCTTCCGAGCCAAGGAATAGAATCATGCCAGAGCAAAACTCACTCAAGGTCAATACAACGGCTACTAAAATTCATATTACCTGCAGTTGTGGCATTTTTTATTTTAGCATTTTGCTTGTGTATGTTGGTAAGAAGGAAAATGAATAAGCAAGGAAAGATGCCACTACCCTCAGATGCAGACTTGCTGAATTACCAGTTAATCTCATACCATGAACTTGTCCGTGCAACAAGAAACTTCAGTGATGATAACCTGCTAGGGAGTGGAAGCTTTGGTAAAGTCTTCAAAGGCCAGCTAGATGATGAGTCCATTGTCGCAATAAAGGTCCTAAACATGCAACAGGAAGTAGCTTCCAAAAGCTTTGACACAGAGTGCCGCGTGTTACGAATGGCTCGTCACCGCAACTTGGTGAGGATTGTTAGCACTTGCTCTAATCTTGACTTCAAAGCACTAGTTCTTGAGTATATGCCCAATGGAAGTTTGGATAATTGGTTGTACTCAAATGATGGGCTGCACCTCAGTTTCATCCAAAGGCTCAGTGTCATGCTGGATGTTGCGATGGCAATGGAGTATCTACACCACCATCACTTTGAGGTTGTCCTGCATTTTGATTTAAAGCCAAGCAATATTTTGCTTGACAATGATATGGTTGCACATGTTGCCGACTTCGGAATTTCCAAGTTGCTGTTTGGAGATGACAACTCTATCACATTAACGAGTATGCCAGGCACTGTAGGATACATGGCACCAGAGTTAGGATCAACAGGAAAAGCATCACGCAGAAGTGACGTATACAGCTACGGAATTGTCCTCCTCGAAGTCTTCACAAGGAAAAAACCAACTGATCCAATGTTCGTCAGTGAGTTGACCTTCAGGCAATGGATTAGTCAAGCATTCCCATATGAGCTCTCAAATGTCGCCGACTGTAGTCTACAACAAGATGGTCATACGGGTGGTACTGAGGATTCGAGTAAGCTATCTGAGGATTCAATCATCTTGAATATCTGTCTAGCATCCATAATTGAGTTGGGCTTGCTTTGCTCAAGAGATGCACCTGATGACAGAGTTCCAATGAATGAAGTAGTTATCAAGTTAAACAAGATCAAGTCAAATTACTACTCTCTGTGGAAGCAATGGAGCTCACCTGGTGAAATATCCTGA</cdnaseq>

Protein Sequence

<aaseq>MALLCVSMVLLILLVPCITAQSALTSPSNNTDLAALLDFKAQCQGPLMASLPAIGLPVHPSAHGLGSHATAACKWVTGLEFEDMALEGTISPQIGNLSFLSSLVLSNTSLIGPLPTELGRLPRLQTLVLSYNSLSGTIPSILGNLTRLESLYLNSNKVFGGIPQELANLNNLQILRLSDNNLSGPIPQGLFNNTPNLSSVPSWLATMPNLTAIYLSTNELTGKIPVELSNHTGLLALDLSENKLEGEIPPEFGQLRNLRYISFANNQITGTIPESIGNLSDLTTIDLFGNGLTGSVPMSFGNLRNLRRIFVDGNQLSGNLEFLAALSNCSNLNTIGMSYNAFEGSLLPYVGNLSTLMEIFVADNNRITGSIPSTLAKLTNLLMLSLSGNQLSGMIPTQITSMNNLQELNLSNNTLSGTIPVEISGLTSLVKLHLANNQLVGPIPSTIGSLNQLQVVVLSQNSLSSTIPISLWHLQKLIELDLSQNSLSGSLPADVGKLTAITKMDLSRNQLSGDIPFSFGELQMMIYMNLSSNLLQGSIPDSVGKLLSIEELDLSSNVLSGVIPKSLANLTYLANLNLSFNRLEGQIPEGGVFSNITVKSLMGNKALCGLPSQGIESCQSKTHSRSIQRLLKFILPAVVAFFILAFCLCMLVRRKMNKQGKMPLPSDADLLNYQLISYHELVRATRNFSDDNLLGSGSFGKVFKGQLDDESIVAIKVLNMQQEVASKSFDTECRVLRMARHRNLVRIVSTCSNLDFKALVLEYMPNGSLDNWLYSNDGLHLSFIQRLSVMLDVAMAMEYLHHHHFEVVLHFDLKPSNILLDNDMVAHVADFGISKLLFGDDNSITLTSMPGTVGYMAPELGSTGKASRRSDVYSYGIVLLEVFTRKKPTDPMFVSELTFRQWISQAFPYELSNVADCSLQQDGHTGGTEDSSKLSEDSIILNICLASIIELGLLCSRDAPDDRVPMNEVVIKLNKIKSNYYSLWKQWSSPGEIS</aaseq>

Gene Sequence

<dnaseqindica>1..592#4182..6164#6253..6662#ATGGCTCTTCTCTGTGTGAGCATGGTGCTCCTCATCCTACTGGTACCATGCATCACTGCACAGTCTGCACTCACCTCTCCATCCAACAACACAGACCTCGCTGCACTGCTCGACTTCAAGGCGCAGTGTCAAGGACCCCTAATGGCATCCTTGCCAGCAATTGGACTGCCAGTGCACCCTTCTGCTCATGGGTTGGGGTCTCATGCGACAGCAGCGTGCAAGTGGGTCACTGGGCTTGAGTTTGAAGACATGGCACTTGAAGGAACCATCAGCCCGCAGATTGGCAACCTCTCCTTCCTCTCCAGCCTTGTACTCAGCAACACCAGCCTCATCGGACCTCTGCCAACTGAGCTCGGTAGGCTGCCCCGACTACAAACTCTTGTTCTTTCATACAACAGCCTGTCAGGTACCATCCCTTCCATCCTTGGCAACCTCACAAGGCTCGAGTCTCTTTATCTTAATAGCAACAAAGTCTTTGGGGGGATTCCACAAGAGTTGGCAAATCTTAACAATCTTCAGATTCTAAGATTGTCAGATAACAACTTGAGCGGACCAATACCACAAGGCCTGTTCAATAACACGCCCAACCTGAGTATGATACTGTTAAATATATATACAAGCTAATGTACTGTATAGTTGGCCCATGTCCAGCCCATCGGATGTCCCGCCCATTGGATCTTGTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCGGTCCGGCAGTGTTATGCTCCCAGACCTGGTTCAATACTTTCAATCAATGAAATACTAATCATATGGCCCAAGGGGCAATCATGTCATTTGTTGATTCTAAAATGAGAAAAGAAAATGAAAATGAATTAAAAGGCCAGTAAAGTTAAATAATCAAAGTGGCAACGAGATAGGGGTTATTTTAGTGAAGCCCACGATAGAGATGTCAAATTAGCGAAGCCCATCGAAACGAGTGTCAAATAGTCAAAAAACTCATCTAGAGAAATTCTCTAGAGCCCTTCGCCTCCGCTGGCTGTGATTCAAATGGAAACAGGCTGACAAACCTTGGGCTGCCTAGGATGGTCGTGCCCTGCGATGATTCTGATAAGAGGCTATTTCAAGCAGCAACAACGATCATGGTAGGGGATGGGGCAAAAACAAGTTTCTGGCATGACCACTGGCTAAATGGTTGCTGTCCCAAAGACATTGCCCCTCTCTGTTTCCGCTTAGCAAAACGAAAGCAAAGATGCATCCAGGTGGAATTCTCGTCAAACAACAGGATCGTCTCATTCAGACAATTCATGACAGTGGAAGAGATCTGATTGTGCGTCTGGGAGGCATGATTCAAGATTTTCAGCCATCTCAAAGTGCTGATGATATTTCCTGGAATTGGAATTCATCGGGTTGTTACTCTAGTAAATCTGCTTACTCGTATCAATTTGCAGGTTCTTTCTCTCGTCTTTGTTTTGAATCCCCATGGAAGTTTCCCACAAATTTTGACAATTTGACCCTTTGCAAAAACTAATTTTACAAATAATCCGCGACCAAAACTTATTTTAGAAATGACCCTTTTGTTCAGCGCCAAATCGTATGGCGCTAAACTTAGACACCTCAGCGTCACGTCAACTGACGCTGAATGTCGTGCCACCGCGGATGGGAGGCTGAGTCGGCGTGCCAACATGCATTTAACGCCGTGCTATTTGACACTAAGGTGTCTAAGTTCAACGCCATACGATTGGCACTGAACAAAATGGTCATTTTTGAAATAAGTTTTGACCACGGTTCATTTGTAAAATTAGTTTTTGTAAAGGGTCAAATTGTCAAAAATTGTGGGAAGTTTCCTGCCGAACCGAAAATTTGTTCCTTTGGCTGGCTCATTCTCCATCACAAAACATTAACAGCTCAAAACCTGCTAAGGAGACATTGGCCGTGCAATTGGATATATTGCCTTTGCACGTGTGCGTTTGAGGACACAAATCATATGTTTTGTGACTGTGTTTTTGCCAGAGAAGTTTGGACTTTGATTCACACTTGGCAAACATTGTCAGTTCCATCCATTCAGCCGGGGGACATTTCTTCTTGGTGGGATAAGTCAATCGAGACAGCATAACAAATCAAAAGCAGGATGTTAGAGGAGCTCTGTTAACTACTTGGTGGAATATTTGTCTAGAAAGAAACAAGAGAATTTTCAAAAACTGTTCTTGTACAGCGAACGAGGTAGCTTATCTTGTCATGCAGGACCTAGACCTTCAAAGATTGGCTTTTAGACCTCCTTGATCTCTGTTGAATGCCGGTCCTTCATCTTTTTCTGGGATTGTAAACTTTTGATTTTTTTCCCCTTTTAATTAAAATTCCAGCAAATCTTCTGCCGTCGTTCTTAAAAAAAAAAAGAACCAGAGAAGCGATTCACCATTTCACAGTTCTAATATACCTGAAACAACAGCAGCTAGTTCAGTTCTCTGCCGCAGCCATGAGTCATGCAGCTTTCCCCTCTTTCATATCAGTAGCTCTAGCGAAGAAATTCACTATTTTAGTGAACCTCTTAACGCACTTGAATAGTAGCTATTTTCTTGCTGAAAAATTCCAGAAAGTAAGTAGCTTAGTGATCTTATTTGCCACTGTTATACATTTTTTTTTGAAACGACTGTTAAACATTTCCTAACTTCCATATGAATATACTTGGAGTTAGATTATCTCCCAGTTTTTATTTTTAAAAAATCTAGCTAGCGTAGAACGACTATTTAAGTGATTTTCTGAAAAAAAAAATTAAACCAGATGTTTTATTCTTGGAAAATCAAACAAACATAAGTACTGGCGCCAAGCATGAAGCATCAAAGTTGGCTGTGTACACCCATGTTGGTGTAGAGATCGGGTTTTAATCTATTATTAAAAACAGAACAGAAAAAAAAAAACGAAGCTATCAATGACGGAAATGACATACTCCTACAGCTTTGCTCCTTGACTTCTGGAAGAGGTTGTTTCTTGGAAGGAATTCATTTTTTTCCTTCTTTCTATTTTGAAACTTTGAAGTGTACCAAGAAACTGCAGTGTACAACCAGCCCTGAAAAATGAAAGTTTGTTTCAAACGAAAAGGTCTAAAACGCTTTCTTCCTTTCACACATATTTCCACCAAAAAATAAACAACTTTTTGACCATTCAACACAATGCACATGTCAATTGCACATCCCACACGGCCACACTTCCAATAAAACCACCAATAGAACCAGCACACTGCTCATGCGTAATTGTGTATCCTCATCATCAACCTTCATTCCTTCACTACCATGGCTCTTCTCTGCATCAGCATGGTGCTCCTCATCCTATTGGCACCATGCGCCACTTCACTCACCCCTCCATCCAACAACACAGACCTCGCTGCACTGCTCGACTTCAAGGAGCAAGTCAAGGACCCTAATGGCATCCTTGCCAGCAATTGGACTGCCAGTGCACCCTTCTGCTCATGGATTGGGGTCTCATGCGACAGCAGCGGGAAGTGGGTCACTGGGCTTGAGTTTGAAGACATGGCACTTGAAGGAACCATCAGCCCGCAGATTGGCAACCTCTCCTTCCTCTCCAGCCTTGTACTCAGCAACACCACCCTCATCGGACCTGTGCCAACCGAGCTCGATAGGCTGCCCCGACTGCAAACTCTTGTTCTTTCATACAACAGCCTGTCAGGTACCATCCCCTCCATCCTTGGCAACCTCACAAGGCTCGAGTCTCTTTATCTTAATAGCAACAAATTCTTTGGGGGGATTCCACAAGAGTTGGCAAATCTTAACAATCTTCAGATATTAAGATTGTCAGATAACGACTTGAGCGGACCAATACCACAAGGCCTGTTCAATAACACACCCAACCTGAGTAGGATACAACTCGGGTCAAATAGGCTAACAGGAGCAATTCCTGGTAGCGTTGGATCATTGTCGAAGCTGGAGATGCTAGTCCTAGAAAATAATCTTCTCTCAGGCTCCATACCTGCTGCTATCTTCAATATGTCCTACCTGCAAGCCATAGCTGTCACACGGAACAATCTCAGAGGTCCGATTCCTGGAAACGAGAGCTTTCACCTCCCTATGTTGGAAGTGTTCTCTCTCAATGAAAATTGGTTCGATGGACCTATCCCATCGGGCCTTTCCAAATGTCAAAACCTTGATGCGATCTCCCTAGCTGTAAATAATTTCACAGGTTCTGTGCCATCATGGCTGGCGACAATGCCAAACCTCACTGCAATTTACTTGTCAACCAACGAGCTCACTGGAAAGATCCCAGTTGAACTGAGCAATCATACTGGGCTGCTTGCTTTGGACCTTAGCGAGAACAAGCTAGAGGGAGAAATACCACCAGAGTTTGGACAGCTGAGAAACCTCAGGTATATAAGCTTTGCAAACAACCAAATAACAGGTACCATTCCCGAATCTATAGGCAATCTCTCTGACCTCACCACAATAGATTTGTTCGGAAACGGATTAACTGGATCAGTGCCAATGTCATTTGGGAACTTGCGGAATCTTCGTCGCATCTTTGTTGATGGGAACCAGCTCAGTGGGAACCTTGAATTCCTAGCTGCATTATCAAATTGCAGTAATCTGAACACAATTGGCATGTCATACAATGCATTTGAAGGGAGTTTACTACCCTATGTTGGAAACCTTAGCACACTGATGGAAATTTTTGTAGCAGACAACAATAGGATCACTGGAAGCATCCCCAGTACACTGGCTAAGCTTACCAACCTACTGATGCTATCTCTCAGTGGAAACCAGCTAAGCGGGATGATCCCCACGCAGATCACATCAATGAACAATCTCCAAGAACTCAATCTCTCCAACAACACCTTGTCTGGCACCATCCCAGTAGAAATCAGTGGATTAACAAGCCTAGTTAAGCTGCATCTTGCTAACAATCAACTTGTCGGTCCTATTCCAAGTACCATCGGTAGCCTAAACCAGTTACAAGTTGTGGTATTGTCCCAAAACTCGTTGTCTTCAACAATACCAATTAGTTTGTGGCATCTTCAGAAACTTATTGAGCTTGATTTATCACAGAACTCTTTGAGTGGTTCTCTACCTGCTGATGTTGGAAAACTGACAGCAATTACTAAGATGGATCTATCAAGAAACCAGCTATCAGGTGATATACCATTTTCTTTTGGTGAACTCCAGATGATGATCTATATGAATCTATCCAGTAATCTACTCCAAGGTTCAATACCAGATTCAGTTGGCAAGTTACTAAGTATTGAGGAGTTAGACCTTTCCTCCAATGTGCTTTCGGGTGTCATCCCAAAGTCCTTGGCCAATCTCACTTATCTTGCCAATTTGAACCTATCTTTCAATAGACTGGAGGGTCAGATACCAGAAGGAGGTGTGTTCTCAAACATCACTGTCAAGTCATTGATGGGAAACAAGGCACTATGTGGCCTTCCGAGCCAAGGAATAGAATCATGCCAGAGCAAAACTCACTCAAGGTCAATACAACGGCTACTAAAATTCATATTACCTGCAGTTGTGGCATTTTTTATTTTAGCATTTTGCTTGTGTATGTTGGTAAGAAGGAAAATGAATAAGCAAGGAAAGATGCCACTACCCTCAGATGCAGACTTGCTGAATTACCAGTTAATCTCATACCATGAACTTGTCCGTGCAACAAGAAACTTCAGTGATGATAACCTGCTAGGGAGTGGAAGCTTTGGTAAAGTCTTCAAAGGCCAGCTAGATGATGAGTCCATTGTCGCAATAAAGGTCCTAAACATGCAACAGGAAGTAGCTTCCAAAAGCTTTGACACAGAGTGCCGCGTGTTACGAATGGCTCGTCACCGCAACTTGGTGAGGATTGTTAGCACTTGCTCTAATCTTGACTTCAAAGCACTAGTTCTTGAGTATATGCCCAATGGAAGTTTGGATAATTGGTTGTACTCAAATGATGGGCTGCACCTCAGTTTCATCCAAAGGCTCAGTGTCATGCTGGATGTTGCGATGGCAATGGAGTATCTACACCACCATCACTTTGAGGTTGTCCTGCATTTTGATTTAAAGCCAAGCAATATTTTGCTTGACAATGATATGGTTGCACATGTTGCCGACTTCGGAATTTCCAAGTTGCTGTTTGGAGATGACAACTCTATCACATTAACGAGTATGCCAGGCACTGTAGGATACATGGCACCAGGTGATAACCCTTGTAAAGTCTGTACAATCTGTATTCTTGTTTCATCTAACTTAAGCTGACCAGTTCTCTTTTGACATGGTGCAAACAGAGTTAGGATCAACAGGAAAAGCATCACGCAGAAGTGACGTATACAGCTACGGAATTGTCCTCCTCGAAGTCTTCACAAGGAAAAAACCAACTGATCCAATGTTCGTCAGTGAGTTGACCTTCAGGCAATGGATTAGTCAAGCATTCCCATATGAGCTCTCAAATGTCGCCGACTGTAGTCTACAACAAGATGGTCATACGGGTGGTACTGAGGATTCGAGTAAGCTATCTGAGGATTCAATCATCTTGAATATCTGTCTAGCATCCATAATTGAGTTGGGCTTGCTTTGCTCAAGAGATGCACCTGATGACAGAGTTCCAATGAATGAAGTAGTTATCAAGTTAAACAAGATCAAGTCAAATTACTACTCTCTGTGGAAGCAATGGAGCTCACCTGGTGAAATATCCTGA</dnaseqindica>

External Link(s)

EnsemblPlants:BGIOSGA004252