BGIOSGA004277

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Revision as of 11:04, 26 June 2012 by 127.0.0.1 (talk) (Created page with "{{IndicaGene| GeneName = BGIOSGA004277| Description = Putative uncharacterized protein| Definition = Oryza sativa Indica Group BGIOSGA004277, complete gene.| tag = P0047E1...")
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Gene Name

BGIOSGA004277

Description

Putative uncharacterized protein

Definition

Oryza sativa Indica Group BGIOSGA004277, complete gene.

LocusTag

P0047E11.34

Ensembl Transcript ID

BGIOSGA004277-TA

Ensembl Protein ID

BGIOSGA004277-PA

Length

3838

Source

Oryza sativa Indica Group

 ORGANISM  Oryza sativa Indica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:32365828..32369665

Sequence Coding Region

32365828..32365901,32366013..32366092,32366199..32366360,32367165..32367270,32367360..32367909
,32368006..32368103,32368193..32368438,32368541..32368655,32368766..32368979
,32369076..32369665

Genome Context

<gbrowseImage1> name=IndicaChromosome01:32365828..32369665 source=RiceIndica01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=IndicaChromosome01:32365828..32369665 source=RiceIndica01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>ATGCAGACTTATGTGATCGTCTTTGATGGCTTACCAGCTTCTCCTTCTGGTTTGCTTGCTACAGTCGTCACCAGCTTTCAGTTACTGTACGTCTTGAGCCCCATCCAAGTGATAGTGGTGCAGATCGATGAGAGTTTCGTAGGAGTCATCAAGCAGCTGCCCGGCGTGCTGGCCGTGATCCCCGACGTCCTGCACAAGGTCCACACGACGCGTTCCTGGGATTTCCTCGAGCTAGAGCGAAATGGCGCGGCGACCGGTGCGTGGAAGGACGCCGCGAAGTACGGGGTGGACGCTATCATCGGCAACGTCGACACAGGTGTATGGCCGGAATCCGCGAGCTTCAAAGACGACGGCTATTCAGTCCCGTCGAGGTGGCGCGGCAAGTGCATCACTGGCAACGACACGACCTTCAAATGCAACAACAAGCTGATCGGCGCGGGGTTCTTCAACCTCGGCTTCCTAGCGTCGGGCTTGCTGCAGGGGAAGCCGCCAAGCCAGGCTGCAGAGCTGTACACGCCACGGGACTACATCGGGCACGGCACGCACACGCTGTCCACCGCCGGCGGCGGGTTCGTGCCGGACGCCAGCGTGTTCGGCCATGGGAAGGGCACGGCCAAGGGCGGCTCGCCGCTGGCGCGGGTCGCCGCCTACAAGGCGTGCTACGCCGAGGGCTGCTCCAGCTCGGACATCCTCGCGGCCATGGTCACGGCGGTGGAAGACGGCGTGAACGTGCTCTCGCTCTCCGTCGGCGGGCCGGCGGACGACTACCTGTCGGACCCGATCGCCATCGGCGCGTTCTACGCCGTCCAGAAGGGCGTCATCGTCGTCTGCTCCGCCAGCAACTCCGGCCCGCAGCCGGGCTCGGTCACCAACGTGGCACCATGGATACTTACGGTCGGCGCGAGCACCATGGACAGGGACTTCCCGGCTTATGTCACCTTCGGCGGCGTCACGAGCAGCATGACCATCAAGGGGCAAAGTCTGTCAAACAGCACTCTGCCTCAAGGGCAACGGTACGCGATGATCAACGCGAAGAACGCCAACGCCGCAAACGTACCGAGCGAGAACTCGACGTTGTGCTTCCCTGGCTCCCTGGACAGCGACAAGGTGCGCGGCAAGATAGTTGTCTGCACCAGAGGGGTGAACGCCAGAGTTGAGAAGGGGCTGGTGGTGAAGCAGGCCGGCGGCGTCGGCATGGTGCTCTGCAACGACGCCGGCAACGGGGAGGATGTCATCGCGGACCCGCACCTCATCGCGGCGGCTCACGTCTCCTACTCCCAGTGCATCAACCTCTTTAACTACCTCGGGTCAACAGACAACCCGGTCGGTTACATCACTGCATCGGATGCCAGGCTTGGCGTAAAGCCAGCGCCTGTGATGGCAGCCTTCTCTTCCCGTGGGCCAAACCCGATAACTCCCCAGATTCTCAAGCCTGACATCACCGCGCCAGGAGTCAGCGTCATCGCGGCTTACAGCGAGGCGGTTTCGCCGACGGAACTCTCTTTCGACGACCGCCGTGTCCCCTACAACATAATGTCCGGCACCTCCATGTCGTGCCCTCACGTGTCGGGCATCGTCGGCCTGATCAAGACCAAGTACCCCGACTGGACCCCCGCGATGATCAAGTCGGCGATCATGACCACAGCGATCACCGGGGACAACGACAGCGGCAAGATCCGGGACGAGACCGGCGCGGCCGCGACGCCGTTCGCCTACGGGTCGGGGCACGTGAGGTCCGTGCAGGCGCTGGACCCGGGCCTCGTGTACGACACCACGTCGGCCGACTACGCCGACTTCCTCTGCGCCCTGAGGCCCACCCAGAACCCTCTCCCGCTCCCGGTGTTCGGCGACGACGGCAAGCCGCCCGCGTGCAGCCAGGGCGCGCAGTACGGCCGCCCCGAGGACCTCAACTACCCGTCCATCGCCGTGCCGTGCCTGTCCGGCTCCGCGACGGTGCCGCGCCGGGTGAAGAACGTCGGCGCGGCGCCGTGCCGGTACGCGGTCAGCGTCACCGAGGCGCTGGCGGGGGTGAAGGTCACGGTGTATCCGCCCGAGCTCAGCTTCGAGTCCTACGGGGAGGAGAGGGAGTTCACGGTGAGGCTGGAGGTGCAAGACGCCGCGGCGGCCGCCAACTACGTGTTCGGAAGCATCGAGTGGTCGGAGGAGTCGGAGTCGGACCCGGACCGGAAGCATCGCGTGCGGAGCCCCATCGTTGCCAAGACGACCTGCGGGTAG</cdnaseq>

Protein Sequence

<aaseq>MQTYVIVFDGLPASPSGLLATVVTSFQLLYVLSPIQVIVVQIDESFVGVIKQLPGVLAVIPDVLHKVHTTRSWDFLELERNGAATGAWKDAAKYGVDAIIGNVDTGVWPESASFKDDGYSVPSRWRGKCITGNDTTFKCNNKLIGAGFFNLGFLASGLLQGKPPSQAAELYTPRDYIGHGTHTLSTAGGGFVPDASVFGHGKGTAKGGSPLARVAAYKACYAEGCSSSDILAAMVTAVEDGVNVLSLSVGGPADDYLSDPIAIGAFYAVQKGVIVVCSASNSGPQPGSVTNVAPWILTVGASTMDRDFPAYVTFGGVTSSMTIKGQSLSNSTLPQGQRYAMINAKNANAANVPSENSTLCFPGSLDSDKVRGKIVVCTRGVNARVEKGLVVKQAGGVGMVLCNDAGNGEDVIADPHLIAAAHVSYSQCINLFNYLGSTDNPVGYITASDARLGVKPAPVMAAFSSRGPNPITPQILKPDITAPGVSVIAAYSEAVSPTELSFDDRRVPYNIMSGTSMSCPHVSGIVGLIKTKYPDWTPAMIKSAIMTTAITGDNDSGKIRDETGAAATPFAYGSGHVRSVQALDPGLVYDTTSADYADFLCALRPTQNPLPLPVFGDDGKPPACSQGAQYGRPEDLNYPSIAVPCLSGSATVPRRVKNVGAAPCRYAVSVTEALAGVKVTVYPPELSFESYGEEREFTVRLEVQDAAAAANYVFGSIEWSEESESDPDRKHRVRSPIVAKTTCG</aaseq>

Gene Sequence

<dnaseqindica>1..74#186..265#372..533#1338..1443#1533..2082#2179..2276#2366..2611#2714..2828#2939..3152#3249..3838#ATGCAGACTTATGTGATCGTCTTTGATGGCTTACCAGCTTCTCCTTCTGGTTTGCTTGCTACAGTCGTCACCAGGTCAGAAAATACTAGTGTGGCCGTTATGGATGTCGGTGCTACCGTACTAGGCTAATAGCTATGTACTCCTACATCACTAATGTGTTCATTTTGTGCCGTAAAAATAAACAGCTTTCAGTTACTGTACGTCTTGAGCCCCATCCAAGTGATAGTGGTGCAGATCGATGAGAGTTTCGTAGGAGTCATCAAGCGTACGCCACATATATCATCATGTTATAGTGTGTTCCCCCCTTGGAGTTTGCAGTTCATACCTGTCACTGACGAGCGCGTTCTTTTTTTCGCGTACTTTGGACTCAGAGCTGCCCGGCGTGCTGGCCGTGATCCCCGACGTCCTGCACAAGGTCCACACGACGCGTTCCTGGGATTTCCTCGAGCTAGAGCGAAATGGCGCGGCGACCGGTGCGTGGAAGGACGCCGCGAAGTACGGGGTGGACGCTATCATCGGCAACGTCGACACAGGTACCACTACTTGAAAAATGATATTCGAGACGATCAAAATGGATTTCACGAGCGACTGGTACAACCGCTAGCAACCAAAAACTAATGAAAATCGAATTTTTAAATTAATTTTTCAATGGATTTTTTTTAAAAAAAGCGCACTATGAGCACCCACAATAATAAAGTAAGGTGCTATCTATAAAATATGTACATCTCAGCAATAGACTAGATTAATAGTAAACCACCTTAATAGTACGTCTACATGGGTATCTGTAGCTCTCTCATCCATTGCCTCGTTTTTCTCTATAAACTATCTCCAGTTTAGTAGATAGATTTACTCTCTCTCTTCATTTAAGCTGTTTCAAGTAGAAAAATATGCTGACATGAATCTCTTGTAGAGAGTCTATAGATAACCATTGCGATTATAGGAGGAAGTGATTGAGAAACACAGCCCCAAATAATGAACACAGAACGATCGGAGCGAATCAGTTATTCCGTGCATCGGTACATGCTTCCCGATGAGATACATGCGCGAGATAACTTAAAATAATCACCCCAAGATGACATGAGGTTAACAGAATCAAATCCCAAGAATACGGGAACTAAAAAGTCAATTCAAACCTCGCAAAATGGTAGCGTCGCCATGGGCGCAGTGCGCCTGTGCCTCTGTTGGATTACGGGATCCCTGGTGGCCTGGTTCAGATGTGCTGTCGTCCTATCTGCTGTACTGAAGTGCTGTGCAGTTAGCCATAGCCGGAACCTGTTCTGATTCCTGAACTCCTGATTCTTATTTTCTGTGCGTGCACGTACTCCCTACAAATGAAGGTGTATGGCCGGAATCCGCGAGCTTCAAAGACGACGGCTATTCAGTCCCGTCGAGGTGGCGCGGCAAGTGCATCACTGGCAACGACACGACCTTCAAATGCAACAAGTAACTCCACTGTCCACAGCTGCTCATCAAGCTGCATGCAACTAATGCAGTAAATTTTCTGGCGAGAAACTAACATGTCGTACATGCAGCAAGCTGATCGGCGCGGGGTTCTTCAACCTCGGCTTCCTAGCGTCGGGCTTGCTGCAGGGGAAGCCGCCAAGCCAGGCTGCAGAGCTGTACACGCCACGGGACTACATCGGGCACGGCACGCACACGCTGTCCACCGCCGGCGGCGGGTTCGTGCCGGACGCCAGCGTGTTCGGCCATGGGAAGGGCACGGCCAAGGGCGGCTCGCCGCTGGCGCGGGTCGCCGCCTACAAGGCGTGCTACGCCGAGGGCTGCTCCAGCTCGGACATCCTCGCGGCCATGGTCACGGCGGTGGAAGACGGCGTGAACGTGCTCTCGCTCTCCGTCGGCGGGCCGGCGGACGACTACCTGTCGGACCCGATCGCCATCGGCGCGTTCTACGCCGTCCAGAAGGGCGTCATCGTCGTCTGCTCCGCCAGCAACTCCGGCCCGCAGCCGGGCTCGGTCACCAACGTGGCACCATGGATACTTACGGTCGGCGCGAGCACCATGGACAGGGACTTCCCGGCTTATGTCACCTTCGGCGGCGTCACGAGCAGCATGACCATCAAGGTTTGACAATACGACCGACCAAATCACACTGTAGTTTGCGCACATGAGAATACGGCGTACTTTTGCTCATGCCATTGGGATTTGGGCAATTTGCAGGGGCAAAGTCTGTCAAACAGCACTCTGCCTCAAGGGCAACGGTACGCGATGATCAACGCGAAGAACGCCAACGCCGCAAACGTACCGAGCGAGAACTCGTAAGAAATCAAAAACTCAGATATCATCTCGACTTGCACCGATCGAATCGAACCGACGTCGATTTGCTTGCACTGCTGCGTGCGTGCAGGACGTTGTGCTTCCCTGGCTCCCTGGACAGCGACAAGGTGCGCGGCAAGATAGTTGTCTGCACCAGAGGGGTGAACGCCAGAGTTGAGAAGGGGCTGGTGGTGAAGCAGGCCGGCGGCGTCGGCATGGTGCTCTGCAACGACGCCGGCAACGGGGAGGATGTCATCGCGGACCCGCACCTCATCGCGGCGGCTCACGTCTCCTACTCCCAGTGCATCAACCTCTTTAACTACCTCGGGTCAACAGAGTAAGCATCGCTCATCAGCACATAGTACTACTTTTCAGGTGCAACACATCACAGCATGGTTATATACTATACTAATTAACGTTACTGCTCTGGTTCATGTAGCAACCCGGTCGGTTACATCACTGCATCGGATGCCAGGCTTGGCGTAAAGCCAGCGCCTGTGATGGCAGCCTTCTCTTCCCGTGGGCCAAACCCGATAACTCCCCAGATTCTCAAGGTTGGCACATTGCTCATCGTATTCCTACAGATACTCGAGAGAGAAAGCTTGCCCCTTCCAAATAGGACCAGCAGCTGTGTGTGTATGCTAACCTGGTGGTGATTTTGCAGCCTGACATCACCGCGCCAGGAGTCAGCGTCATCGCGGCTTACAGCGAGGCGGTTTCGCCGACGGAACTCTCTTTCGACGACCGCCGTGTCCCCTACAACATAATGTCCGGCACCTCCATGTCGTGCCCTCACGTGTCGGGCATCGTCGGCCTGATCAAGACCAAGTACCCCGACTGGACCCCCGCGATGATCAAGTCGGCGATCATGACCACAGGTGAGCGAGAAATGCAGATCGCGATCAATCGAGCCAGCGCAAACATCACATAAACTCTGATCGATCTCACGTCCTTAATATGCCTGTGCATTGCAGCGATCACCGGGGACAACGACAGCGGCAAGATCCGGGACGAGACCGGCGCGGCCGCGACGCCGTTCGCCTACGGGTCGGGGCACGTGAGGTCCGTGCAGGCGCTGGACCCGGGCCTCGTGTACGACACCACGTCGGCCGACTACGCCGACTTCCTCTGCGCCCTGAGGCCCACCCAGAACCCTCTCCCGCTCCCGGTGTTCGGCGACGACGGCAAGCCGCCCGCGTGCAGCCAGGGCGCGCAGTACGGCCGCCCCGAGGACCTCAACTACCCGTCCATCGCCGTGCCGTGCCTGTCCGGCTCCGCGACGGTGCCGCGCCGGGTGAAGAACGTCGGCGCGGCGCCGTGCCGGTACGCGGTCAGCGTCACCGAGGCGCTGGCGGGGGTGAAGGTCACGGTGTATCCGCCCGAGCTCAGCTTCGAGTCCTACGGGGAGGAGAGGGAGTTCACGGTGAGGCTGGAGGTGCAAGACGCCGCGGCGGCCGCCAACTACGTGTTCGGAAGCATCGAGTGGTCGGAGGAGTCGGAGTCGGACCCGGACCGGAAGCATCGCGTGCGGAGCCCCATCGTTGCCAAGACGACCTGCGGGTAG</dnaseqindica>

External Link(s)

EnsemblPlants:BGIOSGA004277