BGIOSGA004363

From RiceWiki
Revision as of 11:05, 26 June 2012 by 127.0.0.1 (talk) (Created page with "{{IndicaGene| GeneName = BGIOSGA004363| Description = Putative uncharacterized protein| Definition = Oryza sativa Indica Group BGIOSGA004363, complete gene.| tag = OsI_035...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

BGIOSGA004363

Description

Putative uncharacterized protein

Definition

Oryza sativa Indica Group BGIOSGA004363, complete gene.

LocusTag

OsI_03560

Ensembl Transcript ID

BGIOSGA004363-TA

Ensembl Protein ID

BGIOSGA004363-PA

Length

7356

Source

Oryza sativa Indica Group

 ORGANISM  Oryza sativa Indica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:33331883..33339238

Sequence Coding Region

33331883..33331946,33332055..33332140,33332421..33332545,33333015..33333123,33333305..33333397
,33333475..33333591,33333676..33333759,33338111..33338151,33338561..33338725
,33339142..33339238

Genome Context

<gbrowseImage1> name=IndicaChromosome01:33331883..33339238 source=RiceIndica01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=IndicaChromosome01:33331883..33339238 source=RiceIndica01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>ATGGCCGCCGCCGCCACCCGCGCCGTCCGCCGCCTCCTCATCGCCTCGCGGAGTCTCCACGCAATCTCTTCCGAGGGAGCGGCGAGGGAGGCGGCCACGAGCTTCGTCCACCCCGCCGCCGTCGTCCACCCCGACGCCGTCGTCGGACAGGGTGTCTCGATAGGCCCATTTTGCACCGTGGGAGCTTCAGCGAGGATTGGTGACGCTTGTCAGTTACACGCTGGGAGCCATGTCATGGGAGATACCGAGCTAGGGGAGAGATGTGTTGTTCTCACTGGCGCTATCCTTGGTTCAGACATTCCAGGGCAAACCATTATCGGTGAAAACAATGTCATTGGACACCACGCTGTAGTTGGTGTTAAGTGCCAAGATCTCAAGTATAAGTCAGGAGATGAATGCTTTCTACAGATTGGTAACAATAATGAGATCAGAGAGTACTGTTCTATTCATCGCTCTTCTAAATCTTGTGACTGCACGGTTATTGGTGACAATAATCTTATAATGGGTTCATGCCATATAGCACATGATTGCAGGATTGGCAACAATAACATATTTGCTAACAATACTCTATTTGCTGGCCATGTTGTTGTTGAAGATTGCACCCATACTGCAGGGGCTGTTGTTGTCCATCAATTTTGTCATATTGGGTCATTTTCATTTCTAGGTGGAGGCTCTGTGAACCGCAATGACACCAAGTTCAGAACAAAATTTGCTGAAAGGAACGGGAAATTGAGTTATCAGAAACTCATGTATCCTATATGGTGGAATCTATTCGCATGTCCTTTGGCCAAGGACGTCGTGGAATTTGCAAATTTAGAAGTTGGAACCGCTGAAATTTCTATAAACTTTCAAGTTTTACTGGCAATTTCCGAGACATCACTTAGGAAGCATCGCTCATTCTTTGGACTGGGCATGTTTCACATCGTGTTCTTGAAAGAAGTCGCCCATTCTTTGACTGTTAAAGCAAGAGTTTCTCGTTGA</cdnaseq>

Protein Sequence

<aaseq>MAAAATRAVRRLLIASRSLHAISSEGAAREAATSFVHPAAVVHPDAVVGQGVSIGPFCTVGASARIGDACQLHAGSHVMGDTELGERCVVLTGAILGSDIPGQTIIGENNVIGHHAVVGVKCQDLKYKSGDECFLQIGNNNEIREYCSIHRSSKSCDCTVIGDNNLIMGSCHIAHDCRIGNNNIFANNTLFAGHVVVEDCTHTAGAVVVHQFCHIGSFSFLGGGSVNRNDTKFRTKFAERNGKLSYQKLMYPIWWNLFACPLAKDVVEFANLEVGTAEISINFQVLLAISETSLRKHRSFFGLGMFHIVFLKEVAHSLTVKARVSR</aaseq>

Gene Sequence

<dnaseqindica>1..64#173..258#539..663#1133..1241#1423..1515#1593..1709#1794..1877#6229..6269#6679..6843#7260..7356#ATGGCCGCCGCCGCCACCCGCGCCGTCCGCCGCCTCCTCATCGCCTCGCGGAGTCTCCACGCAAGTACGCCACCTCTCGCGCACTAACTCTGACCTCCACCGGCCACCGCTCGCTCTCACACCTTTGTTTTTTTTTTTTTTTTTTTTTTGCTTCCTCCCCCCGCGCGCCCAGTCTCTTCCGAGGGAGCGGCGAGGGAGGCGGCCACGAGCTTCGTCCACCCCGCCGCCGTCGTCCACCCCGACGCCGTCGTCGGACAGGTAAAGATCTCCCCCATTCCGATTGCTCCCACTCACCAGCCGCGGCTCTGGCTGAGTTGAGTTGCTGTATCGGCCAACGAACTTGTCGTGGAGTCTCTGCGCTTGGCTGTTGGATTTGGTCCATGCGGAAATGTCGAATGCGTGCTAGCCTTCGCCTGCTTGGTGCAGATGCTCATAATCTGAGATGATTACTTTCTGCTTCATAGGAAATAAAAATGCATTGATTTCTGGTAGTAAATCATTGTGCATATGTGCCTTGAACTTGAACCACTTTTTGTAGGGTGTCTCGATAGGCCCATTTTGCACCGTGGGAGCTTCAGCGAGGATTGGTGACGCTTGTCAGTTACACGCTGGGAGCCATGTCATGGGAGATACCGAGCTAGGGGAGAGATGTGTTGTTCTCACGTAAGATATAATTTTTTTCCCCACTTTCTGTTTTCGGCTCCATCGATGGATCTAGAAATGTTTGCATTCTTCTGATATGATAATAGAACATTCGGGTGATATCGAAATTGAAAAATGATGGGAAAAAAAAACAATTCTCCACCAATAGAAATTCTAGTGAAAGTAAGCTACTAAGCTTGGATTATCACTGGTGCTATGTGGAGCTAAGATGTTGTTCTTGTAGGTACTTTTGAATACTACACATCCCCTGTTAGGCTATCTACCAGGACAATAGTTCTAATTTCTTTCCTCGCCGCATCAAGCTAATTTGTTGCAATAACTTTTCTATCAACAGCTGAACCATAGCCAGCAGCATTCTAAGCTTCAAATATGCAATATTGGAGAACAATGCATCATATTGCATGTTTGTCAAGAAATCTGACTATATGACATGTGAACAACTTTAATGTGGAATTTAGCTTTCTGGCAGTGGCGCTATCCTTGGTTCAGACATTCCAGGGCAAACCATTATCGGTGAAAACAATGTCATTGGACACCACGCTGTAGTTGGTGTTAAGTGCCAAGATCTCAAGTATAAGGTTAGAATTTTTTTTTTGTTTATCACTGGATTTTTAGTGTGATGATGCCACACGGTACAGTGATTTGCTTATCTTTAATGTAAAATCTGTCCATGAGTTAATTTAGATGATTAATATGCCATTTGGCTACTTGAATTGTTATACTTTCTGCTGAACATTAATGCCCTTCCCCCCATCTTAGTCAGGAGATGAATGCTTTCTACAGATTGGTAACAATAATGAGATCAGAGAGTACTGTTCTATTCATCGCTCTTCTAAATCTTGTGACTGCACGGTATTCAGATCCCTTGTGATAAGATTTCCACTGAACTCACTTCTGCCTTCTTACTAACAATCATTGTATTTTTGTAGGTTATTGGTGACAATAATCTTATAATGGGTTCATGCCATATAGCACATGATTGCAGGATTGGCAACAATAACATATTTGCTAACAATACTCTATTTGCTGGCCATGTTGTTGTTGAAGTGGGTGATTATTTACCATGATAATCTTCATCCATTTTCTTGGTCAAGAACCCATCTGTGTATTGATGGAATTCATTGTTTCAGGATTGCACCCATACTGCAGGGGCTGTTGTTGTCCATCAATTTTGTCATATTGGGTCATTTTCATTTCTAGGTGGAGGCTCTGTGGTATGTTGTGTCGATAAGCTTTCATCTGAATTCTGTAAAATTACAAGTTCTTATGCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTGCTGATAGTAGAGTGCTACGCATTCTTTTTATTATTGGCCCTTCATGATATATAGTCTATTTGTTACGAGTTGGGAAGTGCTATATAGTTCACAAAGTGCTCGCAATTTTACTCTTTTCATAAATGCTCACAATTTACTATGCTCACAATTTTGCTCTTTTCAGCACAAATTTTCTTCCATGTCGACCCCATCATCGTTTGAAGCTACTGAAGAGGCAACCCTTTTAGGGGCAAAGCGGAAGTCTTCTTTAGATCCTCCTTCAGCCAAGCGACCACGGTCACCTATTTTGCCATTAGTAAGGTCCCCAGGGGGTGAGACACATGATGTCCCAAGTGAGCTCTCCATCTGTTAGATCTCCAATGGCAATTATCAATTCTTCAAGGCAAAGAACTCCATCACCAGCCCCAACTTCTAATGATATCGATATGACAAATCAGACAAGAGCGACTCCTTGTGGGAGTCACGGTAAGAAATTGCTGACTTTTCTTTGAAATTATTTGTTCTGATTTTTGTCGTTATCTATCCATGTCTATGAATTATTATTTTTACATTAATTGATTGCATGCATGTACTGCAGTTATATAATATGTATGCAATAGCCATTAATTGATTGTTACAGTAATCTATTCATGTCTATGAATTAATTTATATTAATTGATTGTGTGCATGTACTGCAATTGCACAATATGTATAAACTGAATATAGAGTACTTGTCGAAATGTCGTTGGTATACTTATAATATTCGTATAATACTTGTCAGTGCAGTATTTTTACTTTACTCGTCACTAGTGTATTTATAGCAATATTTTTGTGCTTAGCCACAGGGAGAGCAAGAAAACTGAAATCTACAATGTGGAAAGAATTTGATCCAATACGTACTAATGATAAACTATCACATGCTAAATGTATCCACTGCAATAAGGTTTTCGTGGCTAGCCGATCTTCTAGGACTAGTTAGTGCCTTAGACATTTGAAAGTTTGTAAGGTCAGGCTTAGAATGCACCATTTGATTGAGCATATGCATGCCAACTTGTCCCCTACCGCTGATGTTATGAAGAATTGGAAATTTGACCAAGAAGTGTCACGGAAAGAACTTCTTAGGATGATTGTGTTCCAAGAGTTACCCTTTAGCATTGTTGAGCATGTTGGATTTAGGAGATTTGTTGCAAGTTTAAATCCATATTTTAAGGTGATATCAAGAACCACACTGAGAAATGATTGTATGGCTGCTTATGAGGATCATAAGTTAGCTTTATTTGATGTCTTGAAAAGCTCAAATTCTCGAGTATCTCTTACTGCCGACATGTGGACTACCATCCAGAACTTAGGCTATTTGTGTGTTACCTGTCATTACATTGATAATGAATGGAAGTTGCAAAAGAGAATTATAAAGTTTGCTCTAGTGCCGACCCCACATGATGGCATCACTATGTTTAGTGAAATGCTAAAGGCCATTCAGGAGTGGCATATCGAAAATAAGTTATTCAGTGTTACCTTAGACAATGCAAGTGTGAATGATACAATGATGACTCATCTGAAAACCAATCTTGTTGGTAAGACAATGTTGCCTTGTGATGGAGTGTTGTTGCATTTCCGCTGTGCTGCCCATATATTCAATCTAATTGTCCAAGATGGGCTAAAAACCATGAGCAACGCCATTAACAGTATAAGAGAAAGTGTTAAATATGTTCGGAGTTCGCAATCACGTGGTCAAAGGTTTGAAGAGATGATTGCTCAAGTGGGAATAAAAACTAACAGACGACCATCGCTTGATGTATCAACGAGATGGAATTCGACATACTTAATGCTCGAGTCATCTTTATTGGTTAGAATGGCCTTTGAAGCCTTGGATCGGCATGACATAAATTATTTGCATCAACCCTTCGATTATCAATGGACAATGGCTGAGAAGCTTTGTGCTTTATTGAAAGTTTTCTATGAAGCTAATGTTGCAGTATCTGGTACGTTGTACCCAACTTCAACATGCTATTTTCATGAACTTTGGAAGATAAAGATGGTTTTGGACAAGGAGGCTACAAATGAAGATGTCACCATTGCATCTATTGTCAAGGAAATGAAAGAAAAATTTAAGAAGTACTAGGACGCTCAATACTTGCAAATATGTTTCCCGATTATTTTTGATCCAAGGTATAAGTACAAATTCATTGAGTTTCGTTTGAAGTCTGCATTTGGAGCTGCTGCAACTCCTTACCTTAAGGAAATCAAGAGTAATATGCAGAAATTGTTTGATGAATATTTTGCCAAGTATGGGGGCTCAAACAACATCAATTCTCAGCCCGAAACAAGTGTTGAGCAGAATGTTGATGCAAGTAATCAATTCGCTGATTGGAGACAGTTTCTACATGACAAAAGCAGGAGCAAAGTAAAGAGTGAGCTTAGTCGATATCTTGCTGATATGCCTCAGGAAGGTGATTTCCAAGATGGGCATGATTTTGATATCTTGAACTGGTGGATGGTAAACAAAACAAAGTACCCTGTGATTTCACGAATGGCACATGATGTTTTGGCTATTCCAGCAACATCAGTGGCATCAGAAGCAGCATTTTCAACTGGAGAAAGGATCATTAGTGACTATAGAAGTAGACTTTCGAGCAGTACTGTAGAGGCATTGATTTGCCTTCAAGATTGGATGAGGGCAGAAGGTTTGGGTGATTTCTTTGCACGTGATCTTGCTGAGAGTGATGACCAAAATGTGCAACATTCAGGTATTTAAATTGAGATTCGTTTGAATTAACTTGGCTATTCTATATTTTTGTATAGTTGTATACTACACCACTAACATCATTGTTTCTTTTTTATTAACATCCAACAGTCCAGCATGTACTCTTTTTTATTAACTCCATTGTTTTTTCCTATACAGGTGAAAATGCCTATACACCTCTAGTAACATGTAGTACCAGCACAACAACCAGCAGCAGGTTATATATCTCACTATCCTCGATAATTGCTTGTTATTGTCAATTATGTCCTTTAATTCATATTTTGGATGCATTCTTAATTGATTATGTCCTTTAATTCATATTTTGGATGCATTCTTAATTGATGAAACTTAGTACATATTTACTCCATTCTACAATATGGAATAACGTTTTGATCAGTCGGTTGATGAATTCATTTCTAATTTTCGATTAGTAGTTTCTCTGCTCTCACTTTATTAAATTTAATGTGTTGAAGGTAATATAGAAAAAGACCGGAAGAGCTCATGGAGTTGGAAGCAGTTGTTTGTCACTTTGTCAATTGGGACAGTTGGTTTATCATGAAGAGAAAATACATCATCATCACTCTTTGGTCCGATGCTTCGGGCGAAACCAATTCCCAGGGTGTGACCAATTCCCAGGGTGTGACGGGCGGTGTGTACAGGGCCCGGGTACAGCGTTAGCACGCGCATCCGTTTTCTTGCTGGCCGAGTTAATAAAAAAGAAATCTCTCATAATTAGGGATGAAGCACCAATGTAACTTTAGTCATGATGTTGAAGGAAAAGAATGGTGTTCTTATTCAGTACTATACTTGTTATGTCATTGAAAAAGAATACTTTCACATGAAAATAATACAGTTTTCATGTGCTAAATTTGGGATATGGAGTAGTTATGTGCTTGTGTGATTGATGAACCTAATTAAACAGAGATGTGCACATTGTGGGCTGTCCAGCGGTGCCCGTCGGGCTGAGCAATCCCGCCAAGCCGTGCGGGGCGGGCTGCTGTTTGCCCGCACATGCAGTTTGCGGCTGGTGTGGGGTGGGGCGGGACGGCCCACAACCCATCCCACTTGCAATCCTGACGATGATGCATCATGATACATCAGCATATCTCAGAACAGTTGCCAACAAGCTGAAAGAGATCTTGGGGGTATGTTCATCTTTGGGCCTTCACTAATACTGTCATTTGTTCAATTCCCACAACTGAATGATCTTATTTGGTTTTCGCATCGAAATACACGTGGTGCACTTATTCTGAAAATAAGCTGTGTATGGATTCTATTCTGAAAGTAAGCTGTGAAGCGATTTGCAGATACAATTGCCTAAGGGCTAAATTGATAACTCTATGTGCAATATCTGCTCAGTGTTTCAGCCGCTCAGCAGCAGCGTGGTTATACAGTACTACTATATCGATTGCGAGCTCTCTTTGATTTCTTATCATGAACAATCATAGTAACTGAGACATAAGCATAAGCAGCCAACATTTGTTAAAGGATTAACACTTCCATTGATGCATTAGCAGAACCGCAATGACACCAAGTTCAGAACAAAATTTGCTGAAAGGTAAACATAACTTGCAACTACTTAACTCACCATTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTACCAACAGAATGATGTGTCGTTAAGTACTTTATGCACCGTTTAAGGATTCCCCATATTTGGGGAGATTAGGCTTGAAGTTTAACTTAGTGACTAGATATCTGCAGCCAATTATAATTTTTTCTGTCTTATATAATTTTATCTCACTTCATAAATGAAGGTACGGATGTTGAGGAAAGCTTATCAACAAGTATTTATGCCATCTATTAATAGTCAGAGTAGCTTTGATGAGAGACTTGCTGAACTGGTAAACACACATTGGCCATCTTTCTAGTTGTTACTTCCACTCCATGTATTTATTTATTTGGGAATCTGTGTAACAGGAACGGGAAATTGAGTTATCAGAAACTCATGTATCCTATATGGTGGAATCTATTCGCATGTCCTTTGGCCAAGGACGTCGTGGAATTTGCAAATTTAGAAGTTGGAACCGCTGAAATTTCTATAAACTTTCAAGTTTTACTGGCAATTTCCGAGACATCACTTAGGTAATGCATTCAATTATCAAACTTTTTGTGTTATATGAGGTGGATGATAATATTTTTGGGCAAATGCGATGTCATAAGAACTAACTTATACAAAATATAATCATGGAAGAGACAATCCAACTCCAGAACGAGGAAATATCGTTCCAGAAAGATTGAACACAACCAACAAATTGAAAACTGCACACAAATGTGCCTGAAGATTGACCTGGACTTTCAATCGTGAAAGTTGAAACCAACCAAACCAACTTCTTCTCTTACTGCTTAGGGAAGTGCATGAGCTCACATAAACATGTGGAGATACACTTCTTTTCCCAAAAAGTTGCTTCCTGGTGTTGCATAATTTCTAGAATAAGTTTTGGATTGATTCTGGTTGGGTTGTTTTGGTCCTCATGTTTATTGTATGTTTCTGGTTGCAGGAAGCATCGCTCATTCTTTGGACTGGGCATGTTTCACATCGTGTTCTTGAAAGAAGTCGCCCATTCTTTGACTGTTAAAGCAAGAGTTTCTCGTTGA</dnaseqindica>

External Link(s)

EnsemblPlants:BGIOSGA004363