BGIOSGA004392

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Revision as of 11:05, 26 June 2012 by 127.0.0.1 (talk) (Created page with "{{IndicaGene| GeneName = BGIOSGA004392| Description = Putative uncharacterized protein| Definition = Oryza sativa Indica Group BGIOSGA004392, complete gene.| tag = OsI_036...")
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Gene Name

BGIOSGA004392

Description

Putative uncharacterized protein

Definition

Oryza sativa Indica Group BGIOSGA004392, complete gene.

LocusTag

OsI_03616

Ensembl Transcript ID

BGIOSGA004392-TA

Ensembl Protein ID

BGIOSGA004392-PA

Length

4844

Source

Oryza sativa Indica Group

 ORGANISM  Oryza sativa Indica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:33687843..33692686

Sequence Coding Region

33687843..33688259,33689358..33690811,33691681..33691954,33692360..33692686

Genome Context

<gbrowseImage1> name=IndicaChromosome01:33687843..33692686 source=RiceIndica01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=IndicaChromosome01:33687843..33692686 source=RiceIndica01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>ATGTTCTCGCGATCCTACACCAACCTGGTCGATCTCGCCAACGGCAACCTCTCCGCCCTGGACTATGGTGGCGGAGGGGGAGGGGGCGGCGGCGGCAACGGGGCCGGGGGCCGGCCGCCGCGGGCGAGGCGGATGCAGCGGACGATGACGACGCCCGGGACGCTGGCGGAGCTCGACGAGGAGCGGGCCGGGAGCGTCACCTCCGACGTGCCCTCGTCGCTCGCCAGCGACCGCCTCATCGTCGTCGCCAACACCCTCCCCGTGCGCTGCGAGCGCCGCCCCGACGGGCGCGGGTGGAGCTTCTGCTGGGACGAGGACTCCCTCCTCCTCCACCTCCGCGACGGCCTCCCCGATGACATGGAGGTCCTCTACGTCGGCTCCCTCCGCGCCGACGTGCCGTCCGCCGAGCAGGACGACTGGGAGGCATACGTCCTCGCCAACAAGCTCTTCTCCCAGCGCGTCATCGAGGTCCTCAACCCCGAGGATGACTACATCTGGATCCACGATTACCACCTCCTCGCCCTCCCGTCCTTCCTTCGCCGTCGGTTCAACAGGCTCCGCATCGGTTTCTTCCTGCACAGCCCGTTCCCTTCGTCGGAACTCTACCGTTCCCTCCCTGTTCGCGACGAGATCCTCAAATCACTGCTAAACTGCGATCTGATTGGGTTCCACACCTTTGATTACGCGCGGCATTTCCTGTCCTGCTGCAGCCGGATGCTGGGGATCGAGTACCAGTCGAAGAGGGGATATATCGGTCTCGATTACTTTGGCCGCACTGTTGGGATAAAGATCATGCCTGTTGGGATTAACATGACGCAGCTGCAGACGCAGATCCGGCTGCCTGATCTTGAGTGGCGTGTCGCCGAACTCCGGAAGCAGTTTGATGGGAAGACTGTCATGCTCGGTGTGGATGATATGGACATATTTAAGGGGATTAATCTGAAAGTTCTTGCGTTTGAGCAGATGCTGAGGACACACCCAAAATGGCAGCGCAAGGCAGTGTTGGTGCAGATTGCAAACCCAAGGGGTGGTGGTGGGAAGGACCTGGAAGAGATACAGGCTGAGATTGATGAGAGTTGCAGGAGGATAAATGCACAATTTTCACGGCCAGGATATGTTCCTGTGGTGATTATCAATAGAGCCCTTTCAAGTGTGGAGAGGATGGCTTATTATACCGTGGCAGAGTGTGTCGTTGTAACTGCAGTGAGGGATGGGATGAACCTCACACCATATGAGTATATTGTCTGTAGACAGGGATTTCCAGATTTGGATGGTTCTGGGGATGATGGGCCAAGGAGAAAGAGTATGTTAGTTGTGTCCGAATTCATTGGTTGCTCACCATCACTTAGTGGAGCAATTCGGGTAAACCCTTGGAACATTGATACAACAGCAGAGGCAATGAACGAGTCGATTGCTTTATCAGAGAACGAGAAGCAACTGCGGCATGAGAAGCATTACAGATATGTCAGCTCACATGATGTTGCCTATTGGTCCAAGAGCTATATTCATGATTTGGAGAGAAGCTGCAGGGACCATTTTAGGAGGAGGTGCTGGGGTATTGGACTAGGATTTGGATTTAGAGTAGTTGCTCTTGACCGCAACTTCAAAAAGCTTACTGTGGATTCTATCGTTACTGATTACAAGAATTCTAAGAGCAGGGTTATACTGCTAGACTACGATGGAACGCTAGTACCACAAACTACAATCAACAGGACTCCAAATGAAAGTGTTGTTAAAATCATGAATGCTCTTTGTGACGATAAGAAGAATGTTGTTTTTATTGTTAGTGGACGAGGAAGGGATAGCCTTGAGAAATGGTTTTCCCCTTGCCAGGATCTTGGCATTGCTGCTGAACATGGCTACTTTATGAGGTGGACCAGAGATGAGCAATGGCAATTGAATAACCAGTGCTCAGAATTTGGATGGATGCAGATGGCCAAGCCAGTTATGAACCTGTATACAGAAGCAACCGATGGATCATATATTGAAACCAAAGAGAGTGCTTTGGTCTGGCACCACCAAGATGCTGACCCTGGTTTTGGATCTTCACAAGCTAAAGAGATGCTAGATCATTTGGAAAGTGTTCTTGCTAATGAGCCTGTCTGTGTAAAGAGTGGCCAACAGATTGTGGAAGTGAAACCGCAGGGTGTCAGCAAAGGATTTGTTGCTGAGAAGATCCTATCAACGCTGACAGAGAACAAGAGACAGGCAGATTTTGTTCTCTGCATAGGCGATGATAGATCAGACGAGGATATGTTTGAAGGAATTGCTGATATCATGAGAAGGAGCATAGTTGATCCCCAAACATCATTATATGCGTGCACAGTCGGCCAGAAGCCAAGCAAGGCTAAGTACTATTTGGACGATACTAATGATGTTTTGAACATGCTTGAGGCGCTTGCAGATGCATCAGAGGAGACTGATTCACAGGAAAATGCAGAAGAGATAACATCTATCCCGGACCCGGAATAG</cdnaseq>

Protein Sequence

<aaseq>MFSRSYTNLVDLANGNLSALDYGGGGGGGGGGNGAGGRPPRARRMQRTMTTPGTLAELDEERAGSVTSDVPSSLASDRLIVVANTLPVRCERRPDGRGWSFCWDEDSLLLHLRDGLPDDMEVLYVGSLRADVPSAEQDDWEAYVLANKLFSQRVIEVLNPEDDYIWIHDYHLLALPSFLRRRFNRLRIGFFLHSPFPSSELYRSLPVRDEILKSLLNCDLIGFHTFDYARHFLSCCSRMLGIEYQSKRGYIGLDYFGRTVGIKIMPVGINMTQLQTQIRLPDLEWRVAELRKQFDGKTVMLGVDDMDIFKGINLKVLAFEQMLRTHPKWQRKAVLVQIANPRGGGGKDLEEIQAEIDESCRRINAQFSRPGYVPVVIINRALSSVERMAYYTVAECVVVTAVRDGMNLTPYEYIVCRQGFPDLDGSGDDGPRRKSMLVVSEFIGCSPSLSGAIRVNPWNIDTTAEAMNESIALSENEKQLRHEKHYRYVSSHDVAYWSKSYIHDLERSCRDHFRRRCWGIGLGFGFRVVALDRNFKKLTVDSIVTDYKNSKSRVILLDYDGTLVPQTTINRTPNESVVKIMNALCDDKKNVVFIVSGRGRDSLEKWFSPCQDLGIAAEHGYFMRWTRDEQWQLNNQCSEFGWMQMAKPVMNLYTEATDGSYIETKESALVWHHQDADPGFGSSQAKEMLDHLESVLANEPVCVKSGQQIVEVKPQGVSKGFVAEKILSTLTENKRQADFVLCIGDDRSDEDMFEGIADIMRRSIVDPQTSLYACTVGQKPSKAKYYLDDTNDVLNMLEALADASEETDSQENAEEITSIPDPE</aaseq>

Gene Sequence

<dnaseqindica>1..417#1516..2969#3839..4112#4518..4844#ATGTTCTCGCGATCCTACACCAACCTGGTCGATCTCGCCAACGGCAACCTCTCCGCCCTGGACTATGGTGGCGGAGGGGGAGGGGGCGGCGGCGGCAACGGGGCCGGGGGCCGGCCGCCGCGGGCGAGGCGGATGCAGCGGACGATGACGACGCCCGGGACGCTGGCGGAGCTCGACGAGGAGCGGGCCGGGAGCGTCACCTCCGACGTGCCCTCGTCGCTCGCCAGCGACCGCCTCATCGTCGTCGCCAACACCCTCCCCGTGCGCTGCGAGCGCCGCCCCGACGGGCGCGGGTGGAGCTTCTGCTGGGACGAGGACTCCCTCCTCCTCCACCTCCGCGACGGCCTCCCCGATGACATGGAGGTCCTCTACGTCGGCTCCCTCCGCGCCGACGTGCCGTCCGCCGAGCAGGACGACGTCGCGCAGGCGCTCCTCGACCGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACGCTGTGGCCGCTCTTCCACTACATGCTCCCCTTCACCTCCGACCATGGCGGCCGCTTCGATCGCTCCCAGTGGGAGGCATACGTCCTCGCCAACAAGCTCTTCTCCCAGCGCGTCATCGAGGTCCTCAACCCCGAGGATGACTACATCTGGATCCACGATTACCACCTCCTCGCCCTCCCGTCCTTCCTTCGCCGTCGGTTCAACAGGCTCCGCATCGGTTTCTTCCTGCACAGCCCGTTCCCTTCGTCGGAACTCTACCGTTCCCTCCCTGTTCGCGACGAGATCCTCAAATCACTGCTAAACTGCGATCTGATTGGGTTCCACACCTTTGATTACGCGCGGCATTTCCTGTCCTGCTGCAGCCGGATGCTGGGGATCGAGTACCAGTCGAAGAGGGGATATATCGGTCTCGATTACTTTGGCCGCACTGTTGGGATAAAGATCATGCCTGTTGGGATTAACATGACGCAGCTGCAGACGCAGATCCGGCTGCCTGATCTTGAGTGGCGTGTCGCCGAACTCCGGAAGCAGTTTGATGGGAAGACTGTCATGCTCGGTGTGGATGATATGGACATATTTAAGGGGATTAATCTGAAAGTTCTTGCGTTTGAGCAGATGCTGAGGACACACCCAAAATGGCAGCGCAAGGCAGTGTTGGTGCAGATTGCAAACCCAAGGGGTGGTGGTGGGAAGGACCTGGAAGAGATACAGGCTGAGATTGATGAGAGTTGCAGGAGGATAAATGCACAATTTTCACGGCCAGGATATGTTCCTGTGGTGATTATCAATAGAGCCCTTTCAAGTGTGGAGAGGATGGCTTATTATACCGTGGCAGAGTGTGTCGTTGTAACTGCAGTGAGGGATGGGATGAACCTCACACCATATGAGTATATTGTCTGTAGACAGGGATTTCCAGATTTGGATGGTTCTGGGGATGATGGGCCAAGGAGAAAGAGTATGTTAGTTGTGTCCGAATTCATTGGTTGCTCACCATCACTTAGTGGAGCAATTCGGGTAAACCCTTGGAACATTGATACAACAGCAGAGGCAATGAACGAGTCGATTGCTTTATCAGAGAACGAGAAGCAACTGCGGCATGAGAAGCATTACAGATATGTCAGCTCACATGATGTTGCCTATTGGTCCAAGAGCTATATTCATGATTTGGAGAGAAGCTGCAGGGACCATTTTAGGAGGAGGTGCTGGGGTATTGGACTAGGATTTGGATTTAGAGTAGTTGCTCTTGACCGCAACTTCAAAAAGCTTACTGTGGATTCTATCGTTACTGATTACAAGAATTCTAAGAGCAGGGTTATACTGCTAGACTACGATGGAACGCTAGTACCACAAACTACAATCAACAGGACTCCAAATGAAAGTGTTGTTAAAATCATGAATGCTCTTTGTGACGATAAGAAGAATGTTGTTTTTATTGTTAGTGGACGAGGAAGGGATAGCCTTGAGAAATGGTTTTCCCCTTGCCAGGATCTTGGCATTGCTGCTGAACATGGCTACTTTATGAGGTATGTCCCAACTTGGTTTTTTTTTTCACATATTTCAATCGGTACATTACCATTCTTTAGTGGGTCTTGATTGGTTTTGTGCCCTCTGGCATAGTTGTTATATAATGCTGTGTAGTATGCCTGGTGATAGGTTGCCTGTATCAAATCCCTTTGCTGTTATTTTTTGTAAAACATATTAGATGATTACTATATTGTAGCATGTGATGTGCTGACATTGAAGAGTGATCATGTGAACAGACTACTTCAAAGCTCTTGTCATAACCCAAGATTTTGATGATACACATTTATTGAACTTTCTTATATGAGCAACATGTATAAATGAATTTTTTTGTGTAGAGTATGCTAAGGAATAACAAAAGTATTTGTTGTATATATTTTTTTTTATTCACTGATTCATATGGTTTATGTGTCAATTTGATGAAGATGTTACCACTTGCTACATCAACAGATCAACTCATCAAAAACATCAACTAGAATAGGAACCTAAAATTCTAACATGTTAAGTAGGTTAGCCTAACACATTTAACATTGTGGGAGTTGTGACATTGATCATGAAAGCGCTCACATTTTTAGGGTTTTAGAAGCTGTAACAGTATATAGTTGGTCACTATCACTTGTGATTCCATCAGTTGGCAGTGATTAATTAACATTCATAGGAACACACTAAAATGCATTTCTTGAAATTCCAATTCGTTATCCTGCATTCCAGAAATTCTTCTTTGTGAAATCGAGCAAAGTACAGCCTGAATTTTGCATGCGTCGATGGTCTTACATTATTGTTCATGCTTATGACGGTTAATTCATCGAAAACATTTTACTTCTTTAGCAAGTTTTTATCAAATTCTCATCAGCTACCCTCTCTTCTGTAGGTGGACCAGAGATGAGCAATGGCAATTGAATAACCAGTGCTCAGAATTTGGATGGATGCAGATGGCCAAGCCAGTTATGAACCTGTATACAGAAGCAACCGATGGATCATATATTGAAACCAAAGAGAGTGCTTTGGTCTGGCACCACCAAGATGCTGACCCTGGTTTTGGATCTTCACAAGCTAAAGAGATGCTAGATCATTTGGAAAGTGTTCTTGCTAATGAGCCTGTCTGTGTAAAGAGTGGCCAACAGATTGTGGAAGTGAAACCGCAGGTATTTCATTTCTCACACATCATCCATCTACTTTTGTGGTGTTGGCATTGATAATTATTGTGTCAACTAATTTTGCTTACTACTTATAAGGAACCCTTAGAAGGTGCAATATACTTCTAGTAATGATGAATGGTTTCATCATTACTCTGTTTTTTTACATGTTGAAATTGTAACTCTGCTTTGATCTACTGTGATTATGAGTTCATAGCAATAGCATCCAAATCCAATGCATGATAGTACATGATGTGGTGTGGTGGGCAACAGGGATAGTGAATCTGTGAGTGCTTAACTTTTATAGGATAGGAGTTGCACTAGAAAAAAAAAAGGTCCGATTTTTTGTCTACCAACAACAATTTACTTATCTTGCTACTTCAGAGTTTACATTCTTGCTTTGTTGTATTGCAGGGTGTCAGCAAAGGATTTGTTGCTGAGAAGATCCTATCAACGCTGACAGAGAACAAGAGACAGGCAGATTTTGTTCTCTGCATAGGCGATGATAGATCAGACGAGGATATGTTTGAAGGAATTGCTGATATCATGAGAAGGAGCATAGTTGATCCCCAAACATCATTATATGCGTGCACAGTCGGCCAGAAGCCAAGCAAGGCTAAGTACTATTTGGACGATACTAATGATGTTTTGAACATGCTTGAGGCGCTTGCAGATGCATCAGAGGAGACTGATTCACAGGAAAATGCAGAAGAGATAACATCTATCCCGGACCCGGAATAG</dnaseqindica>

External Link(s)

EnsemblPlants:BGIOSGA004392