Os11g0533100

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Revision as of 09:12, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os11g0533100| Description = DEAD/DEAH box helicase, N-terminal domain containing protein| Version = NM_001074550.2 GI:297611934 GeneID:4350646| ...")
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Gene Name

Os11g0533100

Description

DEAD/DEAH box helicase, N-terminal domain containing protein

Version

NM_001074550.2 GI:297611934 GeneID:4350646

Length

8179 bp

Definition

Oryza sativa Japonica Group Os11g0533100, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 11

Location

Chromosome 11:21249287..21257465

Sequence Coding Region

21250012..21250113,21250492..21250677,21250776..21250946,21251062..21251106,21251810..21251983
,21252524..21252610,21253072..21253233,21253668..21253738,21254019..21254158
,21254551..21254675,21255052..21255186,21255792..21256037,21256253..21256495
,21256762..21257346

Expression

GEO Profiles:Os11g0533100

Genome Context

<gbrowseImage1> name=NC_008404:21249287..21257465 source=RiceChromosome11 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008404:21249287..21257465 source=RiceChromosome11 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>cccgaacccactcctcctccgcccgccggtcctggtggtacggcggctgcggctccgcctcctcccgccccgccgcgcgcgcctcgtcgtggccgcggccgcggccgccgccaccaccgcggccgcggcgtccgtggcacccgacgacatcgcgcagctcaaccaccgcctccgcgcgctcgtgcggcggcgggacgcgtcgtcgtcggcggccttgtccgtggacccggcgcaggcggaggcgtacctgcgcatgatccgggagcagcagcggatggggctacgtcagctgcgcggggacggggacggggcggcgtctcaggagggggagagcgacggggacggagacgaagggggaggggggaggaggaagggggtggtggcggcggggagctcgttgggtcaccgggtggacccgcgggagctggaggccggggagtacgtcgtgcacaagaaggtcggcgtcggcaagttcgtctgcatcagcgccgaggacggtctcgactacgtcttcatacagtacgccgacgccatggccaagctcgccgtcgaccaggccgcccgcatgctctacagatacaacctattgatgtttcctgcagacctcacgagaagcagagaccacggaatttgagcaaactgaacgatccttccacgtgggagaagagaagactgaaagggaagcttgctgttcagaaaatggtagtcaatttgatggagttgtatttacaaaggatgaggcagaaaaggcctccttacccgaagcctgtgggaatggatcagtttactgctgaatttccctatgagcccactccagaccaaaaccaggcttttatagatgttgacaaagatctgactgaaagggaaaccccaatggacagattgatttgtggagatgttgggtttggtaaaactgaagttgcaatgcgtgctatattcattgttatatctgctggatttcaagctatggttcttgctccaactgtaatactagccaagcaacattatgatgtaatgtctgagcgtttctccaattatcctgatattaaggttgccatgtttagtggtgctcagaccaaagaagaaaaagatgagctaataacaaagataaggaatggtgatttgcatattattgttggaactcatgctgttcttacagaacgtatggcatataacaatcttggtctcctagtggtggatgaagaacagaagtttggtgtccaacaaaaggagaagattgcatcatacaaggcttctattgatgttctcacactgtctgcaacacccattccacgtactttgtatctcgcgttgacaggtttccgtgatgccagtttaatgtctacgccgcctccagaaagagttgctgtaaggacctacgtgtcaggatttagcaaagaaagggctctatcagctattaagtttgagttggcacgtggtggtcaagttttctatgttgttcctcgaataaaagcaatagatgatgtgctgcaatttctcaaggattctcttccagatgttccaatggctgttgctcatggaaagaaagtttcaaagaacatacaacttgctatggaaaaatttgcttgtggagaagtcaaaattctggtctgcacacacatcattgaaagtggaatagatattccaaatgccaacacgatggtagttcagtatgctgaactatttgggcttgcacagctatatcagttgcgaggtagagtaggaagatccggcacagaaggtttcgcatacctcttctacactgataagtctttgctctcaaagattgcaacggatagacttggagctattgaggagcattcagatcttggtcaaggtttccatgttgcagagaaggatatgggtatcagggggttcggaagcttgtttggtgagcaacaatctggagatgttgcaaatgttggcattgatctattctttgatatgctttttgatagcttgtcaaaggttgatcagttttgtcttattcccgtcccttacaaagatgttcagctggatataaacatttcttcacgtctctcctctgaatacataagttaccttgaaaatccggtggaattgcttaacgaagctgcaaaagctgcagagaaagacctatggaccttaatacaattcacagaagatcttcgtcgacaatatggaaaggagcctcgtgatatggagttgctattgaaaaagctctatgtaagacggatggcagcagatcttggtatcagtaggatatattcatctggcaaaatgatcatcatgaaaacaaacatgaacaagaaggtatttcggctcatgagagaagcaatgtctttggagactcatcgaaattccttatcattcactggaaaggaaattaagggtgaactacttgtcaatctgccggacactctactcctgaattggctttttcattgcttagcagactgctatgctgtaataccagcacttgtgaagtactag</cdnaseq>

Protein Sequence

<aaseq>PEPTPPPPAGPGGTAAAAPPPPAPPRAPRRGRGRGRRHHRGRGV RGTRRHRAAQPPPPRARAAAGRVVVGGLVRGPGAGGGVPAHDPGAAADGATSAARGRG RGGVSGGGERRGRRRRGRGEEEGGGGGGELVGSPGGPAGAGGRGVRRAQEGRRRQVRL HQRRGRSRLRLHTVRRRHGQARRRPGRPHALQIQPIDVSCRPHEKQRPRNLSKLNDPS TWEKRRLKGKLAVQKMVVNLMELYLQRMRQKRPPYPKPVGMDQFTAEFPYEPTPDQNQ AFIDVDKDLTERETPMDRLICGDVGFGKTEVAMRAIFIVISAGFQAMVLAPTVILAKQ HYDVMSERFSNYPDIKVAMFSGAQTKEEKDELITKIRNGDLHIIVGTHAVLTERMAYN NLGLLVVDEEQKFGVQQKEKIASYKASIDVLTLSATPIPRTLYLALTGFRDASLMSTP PPERVAVRTYVSGFSKERALSAIKFELARGGQVFYVVPRIKAIDDVLQFLKDSLPDVP MAVAHGKKVSKNIQLAMEKFACGEVKILVCTHIIESGIDIPNANTMVVQYAELFGLAQ LYQLRGRVGRSGTEGFAYLFYTDKSLLSKIATDRLGAIEEHSDLGQGFHVAEKDMGIR GFGSLFGEQQSGDVANVGIDLFFDMLFDSLSKVDQFCLIPVPYKDVQLDINISSRLSS EYISYLENPVELLNEAAKAAEKDLWTLIQFTEDLRRQYGKEPRDMELLLKKLYVRRMA ADLGISRIYSSGKMIIMKTNMNKKVFRLMREAMSLETHRNSLSFTGKEIKGELLVNLP DTLLLNWLFHCLADCYAVIPALVKY</aaseq>

Gene Sequence

<dnaseqindica>7353..7454#6789..6974#6520..6690#6360..6404#5483..5656#4856..4942#4233..4394#3728..3798#3308..3447#2791..2915#2280..2414#1429..1674#971..1213#120..704#gcttaaacccctcccccttccaccctctccacctctctcttcccgctaacccccccggcctccgcaaccgcatccatggccgccgcggcggccgcgcccatcccaccccgcagcgctagcccgaacccactcctcctccgcccgccggtcctggtggtacggcggctgcggctccgcctcctcccgccccgccgcgcgcgcctcgtcgtggccgcggccgcggccgccgccaccaccgcggccgcggcgtccgtggcacccgacgacatcgcgcagctcaaccaccgcctccgcgcgctcgtgcggcggcgggacgcgtcgtcgtcggcggccttgtccgtggacccggcgcaggcggaggcgtacctgcgcatgatccgggagcagcagcggatggggctacgtcagctgcgcggggacggggacggggcggcgtctcaggagggggagagcgacggggacggagacgaagggggaggggggaggaggaagggggtggtggcggcggggagctcgttgggtcaccgggtggacccgcgggagctggaggccggggagtacgtcgtgcacaagaaggtcggcgtcggcaagttcgtctgcatcagcgccgaggacggtctcgactacgtcttcatacagtacgccgacgccatggccaagctcgccgtcgaccaggccgcccgcatgctctacagatacaacctgtatgcctgagtagctagctatgcgaattttgacataataattgcattttgccaaaattgattcctgctctgaatggctgcaagaactttcatgttttctgcacgttccagcctccatttaaggaacaagaaaaattcattactacttatataaacattgtaaaaattgctatttccggacttgatgtttggtataaatgttttattgtgggcctgtcccttcaattctggtggaaagtaaaaattcacgttgaccatttatccagattgatgtttcctgcagacctcacgagaagcagagaccacggaatttgagcaaactgaacgatccttccacgtgggagaagagaagactgaaagggaagcttgctgttcagaaaatggtagtcaatttgatggagttgtatttacaaaggatgaggcagaaaaggcctccttacccgaagcctgtgggaatggatcagtttactgctgaatttccctatgagcccactccagaccaaaaccaggtcggctcttaatcaaatactgttgttctttcttttgttcacctggaaattctgatgtcgttttttagaaagagaagctgctgctattctttccttgtgcaagacttattggcaaactgatgagtctagttgattaagtaatccatgcactactttactaatacataggattgaatcaacatcaatggatttaatgcagttcgtgttaatgacaggcttttatagatgttgacaaagatctgactgaaagggaaaccccaatggacagattgatttgtggagatgttgggtttggtaaaactgaagttgcaatgcgtgctatattcattgttatatctgctggatttcaagctatggttcttgctccaactgtaatactagccaagcaacattatgatgtaatgtctgagcgtttctccaattatcctgatattaaggttgccatgtttagtggtgctcaggtatagcatggcacaactcaaagttaccccaccaggcaattcattgtgtttttcatttccaagcaatattttttgtatgcctcaattgattaacaaccaagcattattgtgttagtagtaatatttttgtgttactgtgaaatcattttatattcattaattgcttaactacaaggtattactgtattagtcctgaccctagaaagtgtgctgctcttatgatcttatcccatattaggaaaaaaagttgatgtgccttttgttgttgttagaaaaaaaaggtatatatattaccgattgtacaacaatcggtaataataccctgttttctaccttttgatgtttcactgaatgttattaagtactgttcaaatatatatttttaaggaagtcccttttgtctttcccgaaccttttcttctgacattcaataagggattcttgtacttactggtcagcaatttttgtagtgatagtgctcatatgtgggcatgtaggttctcagataggaaggcattagtatttctttaaattttgtctgttaaagtgatggaatttgcgtctcttatcttctgcatgacttggggtacatttctgctttacagaccaaagaagaaaaagatgagctaataacaaagataaggaatggtgatttgcatattattgttggaactcatgctgttcttacagaacgtatggcatataacaatcttggtctcctagtggtggatgaagaacaggttctctttgtaatttgtaaatataaatgtttactctgtttgatttttttgggtatagttttctgttattgataacatcaatgatggtaatatgggtagtattttccagaaatgaaaagaacaagttaatcatattaaggttttctacaagaaatatatatagcaagggaaagcctttttgttgtagattatattcgacaaaaaaaatactagattgttttatgtttactttttgttatttttctaaaggtcaggaatggttatctgaaaacttaactctagtgttccataaattttgactaaatatctcgcaaccaaaatcagccatgcattttattttattttatatatattcacaaactctatgtttcaacagaagtttggtgtccaacaaaaggagaagattgcatcatacaaggcttctattgatgttctcacactgtctgcaacacccattccacgtactttgtatctcgcgttgacaggtttccgtgatgccaggtaagatggcaacaatactatttttttcttctgttttctgttggacgagatattggacgagatattgctaatttattactcgtaaccattgtccacaatttattacgagatattgctaatttattaccactgttttcttgagataatttgtggacaatggttacgagtaatcactagagtttttttaggggattcacttgagccattttattacatttgcaatagttactactgttttcttgagataattcgtgcatttaatgtgatcatagcgctattctgctgactctatatttaattcattcttcataactccaataccttggatgcatttaatctcggaattgttttcatttttttccatgacacaagcatatgtattatgatttcagtttaatgtctacgccgcctccagaaagagttgctgtaaggacctacgtgtcaggatttagcaaagaaagggctctatcagctattaagtttgagttggcacgtggtggtcaagttttctatgttgttcctcgaataaaaggtggaaactttgttatcttcagatgacttattgttcacagcatatacttgtgatgcatgaacctgaaaacaatttttttctcaatattcccaatctcagtttagtactcagcaagttggacttgcgattgcagattgttctaacaattagcctattgctggatgcgttcactaacaatctatactgtccatatagaagctgcaatatcatgcaaagtcattcaataatttagattgcaaatctgcatttatgtttaataatttatttcatcatgcgacagcaatagatgatgtgctgcaatttctcaaggattctcttccagatgttccaatggctgttgctcatggaaaggtttattgactaaactttcagatgtgtttagtatgctatttcactattatttattgtaggctatttttatttgtatacccttgattgtgttaaagccaaagtccaacatgtggatttctaccaatgaaactctcttatcattgttaggatttccttgcatggctgattagtgttcaaactaatttaacaggaaactctatatgggccttgtcgatgaccttgttcttcgatagttcgttttgattttgattgtcaatgactatttattttctgtaaagcttacaaccttcaatttcagtcaagtctatatcttaagttgctagttattatatatggaataatgttaggttaacaatcaagatttatgttctatttgcatagtcgaatggtgcttttgtcataatcaaatttcttgccaattctttttcccgcagaaagtttcaaagaacatacaacttgctatggaaaaatttgcttgtggagaagtcaaaattctggtctgcacacacatcattgaaagtggaatagatattccaaatgccaacacgatggtagttcagtatgctgaactatttgggcttgcacagctatatcaggtggctttgtttttctgatatgctttccttttcctttatggcattttgttttaaacaaaggcaaaaggctcttatttcattgataagagagtgataaaacaacaacaacaatccaagaaggggtacagcaaaacacctgtccagcaaacaaactagaagcacctcattatggcatagttatttagcatttatatttgataatatgtgagcacataaatttgattgattgttgaactatgcccattggcaaatagtttttgagcatcttactggagttttctcatttataaatacaaaataagctacgaagaactgaaaaagtatgagctgtcctgtgcctctgtttagccttctgtgagactgttatcgtacttaaaagtaatatgtgccctagttatccgtgttgtttctaatgcatcttcctaattttacaagttcacccctttgtttttccttcacagttgcgaggtagagtaggaagatccggcacagaaggtttcgcatacctcttctacactgataagtctttgctctcaaagattgcaacggttagctctaccatagtgcccctaattttattatttatattcattttcttgtcacagcatccaaatcatctgatgactgttactgaaagcatatttgcaataatactaaatatggaagcccagtcagaaatataacctaaatttcctttaatgatagtttgttgtacataagatcagttaaccagtcttggtggcacctaataagcagtatttctattattggcactttggaatgtatgttatgcttactaggtttcagtgtattgatgcttcctgagccctcagtcctgaccaccacttgtatgactagccttatgccatggcaaaatgaagtgaactaaattgtagcttttactacttccacagcacctgatgtttgattttctgatacatttctatagggcatcttacagaaaaaataaggggtcttttgtatgacaataaggcaattatcccttgaaatatcttttgttaaatgagttcagaatctgtattgtgttgtgtcattcttcatctgtagttcaatatctccatctgcaggatagacttggagctattgaggagcattcagatcttggtcaaggtttccatgttgcagagaaggatatgggtatcagggggttcggaagcttgtttggtgagcaacaatctggagatgttgcaaatgttggcattgatctattctttgatatgctttttgatagcttgtcaaaggtatacacatcaatcacgcatatctgctcatgatattatttttcttttattcaactattcacttcctttttttggttctgcacctgttattcttatatcctttattttgtatcatacatatcttttactccctccatcctataatatagcaacctagtaccggacaagacacttcatagtacaacgaatccggacatgcttcctgtctaaattcgttgtactatgaagtgtcacatccggtcctaggttgctatattatgggacggagggagtattcatctattcactactttgttgctgcctttaagatggctagttcttggtaaagaaaagaactctgttttgaacaattttttcttgtttgccacttgaagtagtgattattgttatgtaatccccttctagacccagtttttttactgcctcatttgttttatttgagaatgcttctcattcatggcatgcatattgttatcatctttgtttcatgcgaagatattttataggcaatttcaggtagtccttacccatttggtccacatactactatttcaatattccaactatttggtacaatcatacagttcttctgtttttaattttgtacatcctttaatgagccaaataaccttctgaattgttgcatggcgttattaattatttactgtgatcattctgacaagactattttctatctttttaggttgatcagttttgtcttattcccgtcccttacaaagatgttcaggtgggcacaaaatttattgtctttgctgctgtagctttttcatgcaatgacgaataatttcatctgggtaacctgcccttttgatttcattcacaaactttgtgtctttggacagctggatataaacatttcttcacgtctctcctctgaatacataagttaccttgaaaatccggtggaattgcttaacgaagctgcaaaagctgcagagaaagacctatggaccttaatacaattcacagaagatcttcgtcgacaatatggaaaggagcctcgtgatatggaggtttgctgtttctgagattttcatcatgccaatgtgaccatagttggtgatggtgaagtttgattacttcgttatgtcttcctttctcctccttgcagttgctattgaaaaagctctatgtaagacggatggcagcagatcttggtatcagtaggatatattcatctggcaaaatgatcatcatgaaaacaaacatgaacaagaaggtatttcggctcatgagagaagcaatgtctttggagactcatcgaaattccttatcattcactggaaaggaaattaaggtaaatatcagagtatccccatagtttcctggtgaaaacaaaattgttaaaagatattttgcaaatattttccaaaagcctgattagatggcaaagcaatttgctgcttaattagtgatcttgaagctaactatagatttgtctaccatcacgtccttttttatccaccgataataactaacatccttattactacatgtagtactgtttttcattgttgaaatgcatcacaaagatcacattggacatgttatttttaggatatacaagcatgaatattggaaagcgaattggggtttcagctttctgtcattaaaagttcaacttcggacatactgtgaatattaattttattttcaaaaatttacatttttgtagggtgaactacttgtcaatctgccggacactctactcctgaattggctttttcattgcttagcagactgctatgctgtaataccagcacttgtgaagtactagaacttgtttgtgaaaaatgaaggttttgcccgcagcttatacgtgagaacatgatacaatttgtgagaaggcagtctcggctatcttgatagtcagcaacggatagttcttgattgttatggctgttcttgttatacgaacagcaaggtgttggcattgatggactaacctatacacgaactggtaacatttgagtacttcagtacttcatgataatcttgtttttacctttttaatgactcttttcatatctgaaatctcatcccggcttttgcaggaagatagttggtggaatgaagagctagtgaaaattatgttagatagcaatggctgattgatagtaaatccatcaacttggactcagcatgacagttcaaacaaactggaagccttgaaaaactcggttaaaattcttcctgacataataagttgccttcaaatatcttacaggatttttaacagaacccccaaagtctccatatatttttttcgactgcatgtatatatgtgatgtcatgcactgacccatttaattaccataaatcatggtgtttgataaagaaagtgttagccagtgaattgacatattttgttcgacatgtttttttgtccaaccagatgatgatgatagtttagtttagtgcaacaaagtgggattcctgtaccataatgcagataaactggatatgcatttataagaatgaagatgaagtcttgtttttgtt</dnaseqindica>

External Link(s)

NCBI Gene:Os11g0533100, RefSeq:Os11g0533100