BGIOSGA004947

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Revision as of 11:13, 26 June 2012 by 127.0.0.1 (talk) (Created page with "{{IndicaGene| GeneName = BGIOSGA004947| Description = 4-(Cytidine 5'-diphospho)-2-C-methyl-D-erythritol| Definition = Oryza sativa Indica Group BGIOSGA004947, complete gene...")
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Gene Name

BGIOSGA004947

Description

4-(Cytidine 5'-diphospho)-2-C-methyl-D-erythritol

Definition

Oryza sativa Indica Group BGIOSGA004947, complete gene.

LocusTag

P0408G07.39

Ensembl Transcript ID

BGIOSGA004947-TA

Ensembl Protein ID

BGIOSGA004947-PA

Length

2825

Source

Oryza sativa Indica Group 

 ORGANISM  Oryza sativa Indica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:42172099..42174923

Sequence Coding Region

42172099..42172213,42172410..42172492,42172606..42172674,42173158..42173213,42173306..42173385
,42173527..42173609,42173713..42173790,42174164..42174232,42174397..42174465
,42174551..42174597,42174687..42174777,42174870..42174923

Genome Context

<gbrowseImage1> name=IndicaChromosome01:42172099..42174923 source=RiceIndica01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=IndicaChromosome01:42172099..42174923 source=RiceIndica01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>ATGGAGCTCCGCCTCTGCCTCCGCCTCCACGCGCCGCCCGCCTCCGCCCCGACGACGCATCCGCCGCCGCCGCTGTCGCCGTCGCCCAATCTCGCGCTCCGCCGCCTCCGGACCGGTGGGAGCTGTGCGGTTGCTCCGCGGCGGCACGCGAGGAAATGGGGTTCGGCTGTCTGCGCCGCCAAAGCCGACGGCGCGCAGGGTGAGGCCGTGAAGGAGAGGAGCGTCTCGGTGGTGCTCTTGTCCGGCGGGCAGGGGAAGAGAATGGGGGCAAGTATGCCAAAACAATATCTACCATTATTGGGGCTGCCGATTGCACTGCACAGTTTAAAGACATTCTGTCAGCTGAAGGAAGTAAAAGAAGTTGTAGTGGTGTGTGATCCAGACTACAAAGATATATTTGAAGGCTCTATTGAAAATGTGCAAATACCAATTAAATTTGCACTCCCAGGGAAAGAGAGACAAGACTCTGTTTATAATGGACTACAGGAGATTGATGGAGACTCTGAACTTGTTTGTGTACATGATTCTGCAAGGCCCTTAGTGTCATCTGAAGATGTCAAAAAGGTATTAGAAGATGCTATAGTGCACGGAGCTGCTGTTCTTGGTGTGCCTGTGAAAGCTACTATCAAGGAGGCTGACAGCAATTCTTTTGTCGTAAAAACACTTGATAGGAAAACTCTTTGGGAAATGCAAACTCCACAGGTGATGAGGCCCAGTTTACTCAGAGATGGTTTTGAGCTAGTTAAACGGGATGGACTTGAGGTCACTGATGACGTGTCCATTGTAGAATACCTGAAGCACTCTGTTTATATCACAGAGGGCTCTTACACAAACATAAAGGTGACGACTCCTGATGACTTGCTCCTGGCTGAGCGCCTGATGAATGAGAAATAA</cdnaseq>

Protein Sequence

<aaseq>MELRLCLRLHAPPASAPTTHPPPPLSPSPNLALRRLRTGGSCAVAPRRHARKWGSAVCAAKADGAQGEAVKERSVSVVLLSGGQGKRMGASMPKQYLPLLGLPIALHSLKTFCQLKEVKEVVVVCDPDYKDIFEGSIENVQIPIKFALPGKERQDSVYNGLQEIDGDSELVCVHDSARPLVSSEDVKKVLEDAIVHGAAVLGVPVKATIKEADSNSFVVKTLDRKTLWEMQTPQVMRPSLLRDGFELVKRDGLEVTDDVSIVEYLKHSVYITEGSYTNIKVTTPDDLLLAERLMNEK</aaseq>

Gene Sequence

<dnaseqindica>1..115#312..394#508..576#1060..1115#1208..1287#1429..1511#1615..1692#2066..2134#2299..2367#2453..2499#2589..2679#2772..2825#ATGGAGCTCCGCCTCTGCCTCCGCCTCCACGCGCCGCCCGCCTCCGCCCCGACGACGCATCCGCCGCCGCCGCTGTCGCCGTCGCCCAATCTCGCGCTCCGCCGCCTCCGGACCGGTAAGGATCGCCTCCGGGCCTCCCCCTGTCGGCGCCGCTTCTCCGTCCCGCATGCTGCGACCCGCGCTCCGATACCGTACGGGAGCCATGGCGCTCAACTCGCGGAGCTCCGGTTTGGGGATTCTCGTTGCTTGCCGTGCTGATGTGATGCCTTCGGTTTGTTTTTTTTGTGTGGGTCGCTCTTGTCGTGGCCCAGGTGGGAGCTGTGCGGTTGCTCCGCGGCGGCACGCGAGGAAATGGGGTTCGGCTGTCTGCGCCGCCAAAGCCGACGGCGCGCAGGTGGGACGATGTGGCACCGCGCGCTTGCTTCCGCGATTTTTCGAGTTGACCAAGTGAAAGTGCTGTACTGACGACGCGGGGATTTTTTTTTTTTTTTTTTTGGGTTTCGTCAGGGTGAGGCCGTGAAGGAGAGGAGCGTCTCGGTGGTGCTCTTGTCCGGCGGGCAGGGGAAGAGAATGGGGGTATTGTTCTCTCCTCTGCTCTGAAACTTGATCTGAATGGCTGTTTCGTTTGATAATCGATGCCCCTAGCTGATAATGCATCCTGTGCTTTGGTTTAGGCTCGCCCCTTTCATCATTTTGGGAAATGAATTTGAGCTTGCCCGTTCGAATGGGATAGATTTCATTTCGCATTAATGGGCTGTTCTTGGTTTGTTACGGCTTGCTGTTTACTCAGAATAGCTTTTATTTTATTGCTGAAACTCCTATTTGTCGGAATTTTTACAGAAAAGTTCATTTTAGGAATTAGGCAAGGTTGTTCATCCTACGGAATGTTAGGAATGGAACAGACTGCAGAGTTTCTTGTTCAATATTAGATGTGTGCAACGAAATGTGCTTTGTTATTTGGCATTTAAGTTATCACATCCTTCCAGTGTGATTTTTTCTGAAAGAAGCCTTGCAGAGAATGACTGCTGTGTCTGAATTCTCGTCCACCTTTTGCAACAGGCAAGTATGCCAAAACAATATCTACCATTATTGGGGCTGCCGATTGCACTGCACAGGTTCATTTCTTCAGCATAGTTTCCCTCTCTTCTAGGATTCTTTCATCCTACAATGTGATTCAGACATGGGCTTCCTACATTGTATCGTGCAGTTTAAAGACATTCTGTCAGCTGAAGGAAGTAAAAGAAGTTGTAGTGGTGTGTGATCCAGACTACAAAGATATATTTGAAGGTTCCTAAGCTGACTAGTCTCATCCTATTTTCACTGTGTTCACCCATTCTTTTATCTGCTTATCACTTAAACTCTGTCAACTTCAAATTCTGTGACTACAATTGTTTGAGTAAGTGGCCATGTTATCGTTCACTTTCTCAGGCTCTATTGAAAATGTGCAAATACCAATTAAATTTGCACTCCCAGGGAAAGAGAGACAAGACTCTGTTTATAATGGACTACAGGTTAGTAGTAACCCACTTTTATGTTGCTGCTTTGGACACAAATTACAAATATAGTACGGTATAATTTCCTTTCTGTTCTAACTTTGTTTTGTGTCCTCTGCAGGAGATTGATGGAGACTCTGAACTTGTTTGTGTACATGATTCTGCAAGGCCCTTAGTGTCATCTGAAGATGTCAAAAAGGTAGCTCCTCCTGTGATCAAGTTGTTTTCAGATGTTTCCCTTTGGTGCTTTGCTGTTCTAGAATATTGATAAATCATCTTTCATAGCTATCAACCAACGAGAAATTCACTCTCTCTTGCAATTTGCAACCTACATTTTGTTTATATGGACTACATGTACAATTTCAATGTTTATATTAAACAAATTACCCCATTCCCAACCCTTCTGTATTTTGTTGAGAACAAGAATTTTCTCTGTCTTTGTGGCTTGACAAGTATATGTTTTGAACTTCTGATGCACAGGTAGTTTTATAAATAGGAAAAGGGAATAGCTCTAGCCTCCAGGTGCTTTGCAGTCTGCTAGGAATCATATTGATTTTCATTTCATTGCTTAGGTATTAGAAGATGCTATAGTGCACGGAGCTGCTGTTCTTGGTGTGCCTGTGAAAGCTACTATCAAGGAGGTGAGTGTTTACCATCCAGATGATGATCAGTTCGATGAGCTTACAAAGATCTTTGGCAACTTTTCATCGAACAATTATCCAATGTGTTCAGTGAACTTTCATTGTGCAGTAAAACCTTGATATTCAGGCTTGAGGGCGTAATACTTTTCACCTTTCTTCTTCAGGCTGACAGCAATTCTTTTGTCGTAAAAACACTTGATAGGAAAACTCTTTGGGAAATGCAAACTCCACAGGTAAGCACACACTATTTTCTATGTAATCTGTAAAAGAAAAGTGTTTCATGCTTTCAGAAATTACAAAGAAATGTTCTCATTGTAGGTGATGAGGCCCAGTTTACTCAGAGATGGTTTTGAGCTAGTTAAACGGTTATCTTTCTTGTCTTAGCTCGGTAAATCGAATTCAGAGATATCCTGATTCTCAATTTTTGTTGATGATCATACTTTACATTTCGCAGGGATGGACTTGAGGTCACTGATGACGTGTCCATTGTAGAATACCTGAAGCACTCTGTTTATATCACAGAGGGCTCTTACACAAACATAAAGGTATTCCAAATTAGCTCTTTGAACATTAATATTTTTGTCTGCTAGGTTTGAACTTTGAAGAGATCGATTGTCAAAATGTGAATCTATTGCAGGTGACGACTCCTGATGACTTGCTCCTGGCTGAGCGCCTGATGAATGAGAAATAA</dnaseqindica>

External Link(s)

EnsemblPlants:BGIOSGA004947

Retrieved from "https://ngdc.cncb.ac.cn/ricewiki/index.php?title=BGIOSGA004947&oldid=42671"