BGIOSGA004996

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Revision as of 11:14, 26 June 2012 by 127.0.0.1 (talk) (Created page with "{{IndicaGene| GeneName = BGIOSGA004996| Description = Putative uncharacterized protein| Definition = Oryza sativa Indica Group BGIOSGA004996, complete gene.| tag = P0551C0...")
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Gene Name

BGIOSGA004996

Description

Putative uncharacterized protein

Definition

Oryza sativa Indica Group BGIOSGA004996, complete gene.

LocusTag

P0551C06.20

Ensembl Transcript ID

BGIOSGA004996-TA

Ensembl Protein ID

BGIOSGA004996-PA

Length

6817

Source

Oryza sativa Indica Group

 ORGANISM  Oryza sativa Indica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:42963285..42970101

Sequence Coding Region

42963285..42963405,42963760..42963881,42964226..42964389,42964810..42964900,42965500..42965679
,42965928..42966005,42966151..42966231,42966583..42966675,42966894..42966974
,42967071..42967233,42967350..42967470,42967755..42967827,42968092..42968199
,42968467..42968564,42968651..42968696,42969060..42969156,42969487..42969560
,42969639..42969743,42969829..42969909,42969991..42970101

Genome Context

<gbrowseImage1> name=IndicaChromosome01:42963285..42970101 source=RiceIndica01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=IndicaChromosome01:42963285..42970101 source=RiceIndica01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>ATGTCTCTCCGGAGGCGGGAGCGCCGGGTCATCGCCGCGGCCGGCGCGGCGGCGCTCGTCGCCGTCGGCCTCAACCTCGCCTTCTCCGCCGTCGCCGCCCACCGCCGCAGGAAGCGGCGAGAGCTCCCAGGGTTTACTGCGCAAGTCAACCTCTCAGCTGCTGACATCAAGAGATTAGCTGATCGCGTCGTTTCTAAGTCGAAGGAAACATACGACGCTGTGGCTGCGGTTCCCCTAGATAAAGTCAGCTTCTCTAATGTCATTGCACCTCTGGCGGAATTAGATGCTCAGCAATTCCCACTGGTTCAAGCCTGTGTGCTTCCTAGAATGGTCTCACCGTCTGATGATGTACGAAGGGCCAGTGCAGAAGCAGAGAAACGATCGGATTCTCACTTCCAGCAGTGCAGGCAGCGTGAAGATGTGTATCGTGTCATAAAGGCATTCACACAGAAAGGTGAAAGAATAGGTCTTGAAGCAACAAGATTTGTCCAGTGCATGGTAAGAGAGTTTGAACGCAATGGTGCTAAACTAACTCAAAGCAAGAAAACGGAGATGGAGAAACTGAAATCTCACATTGATGACTTAAGTTTGAAGTATATTCAAAGCTTAAATGATTCCACAAAATTTCTTCTATTGAACGAGGAAGACCTGGCTGGGATGCCACTAGAGTTCTTAAAGGAACTGGAAAATACAAATGGGAAGTGGAAGGTTCTGCTGACCAGTTATTATGTTACTCCAATTCTTGAGCATTGCAAGGTTGGCTCTACCAGGAAACTGATTGCTGTTGCTTATGGCCAGAAAGGTGGAAAAGAGAATATAGCCATCCTGGAAAAATTGGTCCAGCTAAGACACCGGCTTGCTAGATTGCTGGGGTATCCCAATTATGCTGATTATGCTATTGAACCTAGAATGCCGAGGACGTCAAGGAAGGTCTTGGAGTTTTTGGAGGAGATGTCAGAACAATTAAATGGCCTAGCTAATAGGGAGCTCAGCGTACTCAAAGATCTGAAGATGAAGGAGGAGGGTGATGCTCAATTTAGCGTGGAAGACCTGTTATACTACATGAAAAGAGCTGAGGAGCTCAAGGTTGATCTTGACATTGGTGAAATTAAACAATTTTTCCCTGTTGACCTGGTCATATCAGGAATATTGAAGATGTTTCAAGATCTGTTTGCACTGCGATTTGAGGAAATGAAGGATGCTGAGACTTGGCACGATACAGTTCGTCTCTTTTCTGTCTGGGATGCAAGTTCAAGTGATCTTTTGGGTTACTTTTTTCTGGATATCTTTTCCAGGGAAGGAAAATATGCACATACCTGCGTCGTGGCACTTCAGAATGGATGCCTGTGTTCTAATGGCACAGATAAGGTTCCAGTTGCAGTTCTATTGTCTCAATGCCCGAAAGAGTTTGATGGGAATTCAGCACTGCTGAGGTTCCCAGAAGTTGTAAGGATATTCCATGAATTCAGTCATGTGGTCCATCATATCTCCAACAGAGCCACCTTTTCTAGATTTTCGGGTCTTCAACTGGAGGGGGATTTTGCTGAAATTCCAAGTCTGTTACTTGAGAATTGGTGCTATGAGAACATTTCTCTAAAAATGATGTCTGGCTTCCATCAGGACATTACGAAGTCTATCACTAGTGAGGCTTGCCAATCACTGAAAAGAAGGCGTGACATATTTGCTGGCCTGAAACTGAAACAAGAGATCCTTTTGTGCCTTGTTGATCAGATAATACATACAGGCGAAAATGTGAACATTGATGACTTAATCAAGGATCTTCATCCAAAGGTAATGCTAGGTATACCTTTGTTGGAAGGGAATAGCCCAGCTTCATGTTTTCCACGTATTGCTATTGGCTATGATGCTGTGTGCTACAGTTACATATGGAGTGAGGTGTTTGCGGCTGATCTGTTTGCATCAAAATTTAAAGACGACTTGCTAAATCAGCATGCGGGGTTGCGGTTTAGAAATAAGGTATTGGCTCCAGGAGGCTCGAAAAATCCCCTTGATATCATATCTGACTACCTTGGACGAGAACCATCATTGCAAGCTTTCATTCAGAACCGAACGAGGAACAGTCTGTGA</cdnaseq>

Protein Sequence

<aaseq>MSLRRRERRVIAAAGAAALVAVGLNLAFSAVAAHRRRKRRELPGFTAQVNLSAADIKRLADRVVSKSKETYDAVAAVPLDKVSFSNVIAPLAELDAQQFPLVQACVLPRMVSPSDDVRRASAEAEKRSDSHFQQCRQREDVYRVIKAFTQKGERIGLEATRFVQCMVREFERNGAKLTQSKKTEMEKLKSHIDDLSLKYIQSLNDSTKFLLLNEEDLAGMPLEFLKELENTNGKWKVLLTSYYVTPILEHCKVGSTRKLIAVAYGQKGGKENIAILEKLVQLRHRLARLLGYPNYADYAIEPRMPRTSRKVLEFLEEMSEQLNGLANRELSVLKDLKMKEEGDAQFSVEDLLYYMKRAEELKVDLDIGEIKQFFPVDLVISGILKMFQDLFALRFEEMKDAETWHDTVRLFSVWDASSSDLLGYFFLDIFSREGKYAHTCVVALQNGCLCSNGTDKVPVAVLLSQCPKEFDGNSALLRFPEVVRIFHEFSHVVHHISNRATFSRFSGLQLEGDFAEIPSLLLENWCYENISLKMMSGFHQDITKSITSEACQSLKRRRDIFAGLKLKQEILLCLVDQIIHTGENVNIDDLIKDLHPKVMLGIPLLEGNSPASCFPRIAIGYDAVCYSYIWSEVFAADLFASKFKDDLLNQHAGLRFRNKVLAPGGSKNPLDIISDYLGREPSLQAFIQNRTRNSL</aaseq>

Gene Sequence

<dnaseqindica>1..121#476..597#942..1105#1526..1616#2216..2395#2644..2721#2867..2947#3299..3391#3610..3690#3787..3949#4066..4186#4471..4543#4808..4915#5183..5280#5367..5412#5776..5872#6203..6276#6355..6459#6545..6625#6707..6817#ATGTCTCTCCGGAGGCGGGAGCGCCGGGTCATCGCCGCGGCCGGCGCGGCGGCGCTCGTCGCCGTCGGCCTCAACCTCGCCTTCTCCGCCGTCGCCGCCCACCGCCGCAGGAAGCGGCGAGGTACGCGCCGCCCGAAACCCCCCCGGAGTTTTGGTTACGATGCTCCCCTCATGGCGCTCTACTTTTTCCTCAAGCTGTGCACGCCTCTCCTGCTTCTGCTCAATTGTGTAGCAATGTAGCATCCGCTGTTGATTTTTTTTTTTTTTTGGGGGGGGGGGGGGGGGGGCGTGAAGAGTGGAAAAATGGCCCCCATAATGTTGCCCTTCTGTCCGCAAATCCACGCGTGAGATGTAGAAATATGTGTTTGATCGCAATAAATATTGCAGGAATTTAACTCTTGGGGCATGGAGTTATGAAGATTTAGTGGCGTAGTTTTCGCGTGATTGAATGTTTGAATGTGTTGGATGGTTGCAGAGCTCCCAGGGTTTACTGCGCAAGTCAACCTCTCAGCTGCTGACATCAAGAGATTAGCTGATCGCGTCGTTTCTAAGTCGAAGGAAACATACGACGCTGTGGCTGCGGTTCCCCTAGATAAAGTATGTATCCAACACTCTGCTGCCTCTGCATTTTTTATGGAATATACCTTTTCAATCAAATCTTAGGCATTGTTTTGGAATGTGTATATGCTGCATTATTTCATTTGCATCCCACCATTACGTTGAAATGCTTTTTGTGGTATAGCAGCAGAAACACGTACGCTTTACAGTATGTTGTTTCTTAATTTCATTAAGTTGATAATGTGACATGAATAAATGTGTGGGTTCTTTTTAAATGCCTCAACACTGGCAGGATATATTCATCCTATACTGTCTATTTGCCTGCATAAAGCCAAAGAGTGGCACGGGTTTCATATTTTGGTACATGATATGTTCTGTTGCAGGTCAGCTTCTCTAATGTCATTGCACCTCTGGCGGAATTAGATGCTCAGCAATTCCCACTGGTTCAAGCCTGTGTGCTTCCTAGAATGGTCTCACCGTCTGATGATGTACGAAGGGCCAGTGCAGAAGCAGAGAAACGATCGGATTCTCACTTCCAGCAGTGCAGGTGCAACTTGTTACTTATTTCCTTTTCTATCTACACGGTGTAACTGCTGGTAGTTATACATCTACCAGACAGAGTTGCAATCACTGTTGATAAATAATGTGAAACCATGCACATAGGTTGGTATCTTGGTATCTTAAGAATCCACGATACTTGTATTATTATATAACCACTTCAGTGAGCATTCGTAACACATAACTCATTCCGTATTCATTCCTTTCCTTGTTGATATGGCTAAATGAAGTGATATGATTAAGAAAACACATTCTTAATAGAATCTGAATTCCCTTTCCTTAATAAAACAAGGGCCCCTGTTTCAAATAAAACAATAACCTGAATTCCCTGTTATTGACCTTTCCGATCTAATAAATTCCTGTTGAGACTCTAGTATAAGTACCTTGTTTTTTCGTGCAAGGTGTCCAGGCAGCGTGAAGATGTGTATCGTGTCATAAAGGCATTCACACAGAAAGGTGAAAGAATAGGTCTTGAAGCAACAAGATTTGTCCAGTGCATGGTAGACGATTCCCTTCTCTGAATGATGCTATGATCACGCAGCTCTATAGATGTCCCTTGTCATTGTATCTTTTCTTCATCCGATGTACTACCTCTGTTTCATATTATAAGTCGCCTAGACTTTTTTCCTAGTCAACTTCTTTAGGTTTGATTAAATTTATAGAAAAAATTAGCAACATCTCCAACACCAAATTTGTTTCATTAAATGTAACATTGAGCATATTTTGATAATATGTTTATTTTGTGTTGAAAATGTTGCTATATTTTTCTATAAACTTGATCAAATTTTAAAAAGTTTAACTAGGAAAAAAGTTAAAACGACTTATAGTATGAAATGGAGGGAGTACCTTTGTGCGTGCTCTATCTTTTCTTGTTCGTTTTGCATTTCACCTATGATTTATTGACTTTAAAAGATTAATATCTGTTCGTTTTTAGCTATAGATCAAAGTTGAAGGTAGACAGTGGATGTATAGCTACTTTACTTATGAATCTGTTGGGAAATAAAGGATATGCTGTTTGCTTAAAAGGTGTCCCAGCATATTTCTTGACCCAACGAGTACCTGCTTGCTGATTCAATCATTATGTCAATGACACATACAGGTAAGAGAGTTTGAACGCAATGGTGCTAAACTAACTCAAAGCAAGAAAACGGAGATGGAGAAACTGAAATCTCACATTGATGACTTAAGTTTGAAGTATATTCAAAGCTTAAATGATTCCACAAAATTTCTTCTATTGAACGAGGAAGACCTGGCTGGGATGCCACTAGAGTTCTTAAAGGTAAGCTGGGAGGATGCAGTATACACACTTCCGAATGTTCACACATCCATGATCCATCCAATATTATTCTTTAATGAGTTTACCTTTAGGAACTACAATGTGCGAACATTGGACTGTTAAAAAATGGGAGTACTCAGCTTTTATTGAAAGCTATTTTTGGACTTTACGAATGAACTGAAGTGTGATAAGAGAAAAAAGGATGATACTATTTCTATCTGATCCTACATTACAATGACTGTTCAACTCAGGAACTGGAAAATACAAATGGGAAGTGGAAGGTTCTGCTGACCAGTTATTATGTTACTCCAATTCTTGAGCATTGCAAGGTCAGCTCTATTTTGTGCTTCTTTTCATGCACATCTGCATAAGGCATTTAATATTATATGCTGTGGAGTACTTAAGATTAGAATCTTTTTACTACAATTCTTTTATATAATCGCTAACTGGTCTAATTTATTTCTTGTTTTCAAGGTTGGCTCTACCAGGAAACTGATTGCTGTTGCTTATGGCCAGAAAGGTGGAAAAGAGAATATAGCCATCCTGGAAAAATTGGTAACTCCAAATATCCATATCTGTAAACTCATAAGGAACTTATACCTTTCGATTCATGATTTCATTTATTTCGCACAACTAAGTTCTATGTTGCAGTTGGTCAATTACCCAGGAAAGATATGTAACATTATAGCTCATTGAAATAGGATTTTATTATTTTACGTCCAACCTGTGCTGTAGAGGTGCACTAGGGTGCAATCAACATTTATGAGCATTATTTGACTTAAGCGTTACAATGTTTTAATTTCTTAACTGGTAAAGCAATTGCTTATTTTAGATGCATAATCTCAGTTCATAATGGAAACCAGCAGCTGACAAGTTGTGTTTCCCCCCCTTTTAACATAATAATAGGTCCAGCTAAGACACCGGCTTGCTAGATTGCTGGGGTATCCCAATTATGCTGATTATGCTATTGAACCTAGAATGCCGAGGACGTCAAGGAAGGTTTGTACTTTCCCATTATGCAGATCTGCTAGAGATTTTTTTTAGCTAAATCTGCATTCTTAATTTTGTCTCAATATACTGATATAATTACTCTCAGATCATCAGTTTTCCAACAAGATGATGTTTAGCCATTTCATTTGCATCCCCTTTCACATGCTCACCTAAATTTGCATATGATACCAAGACCCACTCATGCTCTAAAGGACTTGTACCTACAGGTCTTGGAGTTTTTGGAGGAGATGTCAGAACAATTAAATGGCCTAGCTAATAGGGAGCTCAGCGTACTCAAAGATCTGAAGGTTTTGGACAAAGCTCTTATTGATCTCTCTCTTTCTTTTTATTGATTACACTCTTTTTATTAACAATTTAAACTCATAGTCATCTTCTAATCTCAGATGAAGGAGGAGGGTGATGCTCAATTTAGCGTGGAAGACCTGTTATACTACATGAAAAGAGCTGAGGAGCTCAAGGTTGATCTTGACATTGGTGAAATTAAACAATTTTTCCCTGTTGACCTGGTCATATCAGGAATATTGAAGATGTTTCAAGATCTGTTTGGTAAGATGTACCCATCAGAGAATAAACCATAACCCCCCATTATTCATAAAATTCGACTGGATATACCTCTTCCAAAATATGACTGGATGTGTTTTACTCTCATCTTATTTTGGCAGCACTGCGATTTGAGGAAATGAAGGATGCTGAGACTTGGCACGATACAGTTCGTCTCTTTTCTGTCTGGGATGCAAGTTCAAGTGATCTTTTGGGTTACTTTTTTCTGGATATCTTTTCCAGGTTTGTTTGGATGCATGCTGGTGAAGTTTTAATAATTTTGCTAGCCTCACGCTACTATTTAGAAATCTAGTTGAGCATGCATATTGAAACATTACTTCTGAAAGCCAATTCTCTTAGGATAAAATCTTATCTTGATAAATGCAGACACAGAACACATGAAAGAAACATTAAGGATAAACAGCATAACATGGAAACACAAATCACAAGGGAAAAAAATCCACACTTCCACTTCCACTTGCGACCAAATAAAGTAATTTTGATGAACTACTTGACTTTATTCCCAGGGAAGGAAAATATGCACATACCTGCGTCGTGGCACTTCAGAATGGATGCCTGTGTTCTAATGGCACAGATAAGGTAATGTAGAGAATTCATGTATTTCTAGTGCAGTTAGAGCATGATCATTGTTCGAATCGGCTCATTGAAAGGACTGGTTATTCAAAGTAGTGTAAAAAGGGTGTCTGCTAAAGCAAAGCTACTGGAGACTTAATCAAAATTTTACAAGCTAGAAAACGACTCTGCGGTTCTCAGTTTCTCACGAGTCGCGATATCTTTAATCGGTGAAATGTACATGTGGATTCTAGTGGAGCCCGGTGTTAATTTGGTGGTCATTGCCCACAGGTTCCAGTTGCAGTTCTATTGTCTCAATGCCCGAAAGAGTTTGATGGGAATTCAGCACTGCTGAGGTTCCCAGAAGTTGTAAGGATATTCCATGAATTCAGTCATGTGGTATGCTAAATTCTCTCTTTTAACAGAAATGTTCTTTACAAATAGGGCTTCACAGAAATATGTTTTGTTTTAAGTTTATAATACTAGTTACTTCATTAGGCACTGTTTTTGCCACTTGGGAATTATCGTTATACCTTAATTATGGTAAATGAAATTTAGCTTTCTTTCTTGAGAAATTCGACTTTTGACCAATGCCAGATTGCTGATTATCTCTTCCGCTGTTGAACATCAAATAAACTGCGTTGATTGGTCTCCAATATTCTGTAGGTCCATCATATCTCCAACAGAGCCACCTTTTCTAGATTTTCGGGTCTTCAACTGGAGGGGGATTTTGCTGAAATTCCAAGTCTGTTACTTGAGAATTGGTAGGTATTGCTGTGTTTCTTCAGTAACATACCAACACTTTGGAAGCTGTCATTTCTGATGTGTAAGATGAAATTTGCCATTTCAGGTGCTATGAGAACATTTCTCTAAAAATGATGTCTGGCTTCCATCAGGTGATGCAAGTTAGCATGATGTTTATGTGCCGAAATAATATTTGAAACATTGTGCACTGCCTCTACAGAGGAGATATTTGGATTTTTATACTACCAAGTTATTTTAGGCAATGGAACAACCAAGCTTATGAATAAGAAGTGGATGTTTTTTGCATGACCGGAAAAACATTGTTTAGATTAAGAAAGCAGTATATGAACTGGGAATAGTTTCCTCTTTTGTTTATGACATGAAGTGAATCTGATGACACATAAAAAAAAATTGTATTGGTGATACAGGCTTTTTAGACTTAGACAAGTTAGTGTTGACCTGATGAAACTTGTTTCAAATTGCACTTGAAATAGTTTCTGTTCTTATCATTGTAGGACATTACGAAGTCTATCACTAGTGAGGCTTGCCAATCACTGAAAAGAAGGCGTGACATATTTGCTGGCCTGAAACTGAAACAAGAGATCCTTTTGTGTGAGTCATTTTGCTGGGAAGATTGTTTCTCAACAGTACTATCTCTGATACTCTGACAACATAGTGAGATACGGATACTATGAGACATTGACGATTGATGTCCCCAGCACTTCGTTTTCTCTAATTGTGCAACACAATAACTGATAAATAAACTCATTTGTCGTTCTTAAGACCTGTATTTTGAACAAAAGAAAAACAGTCTTTACTTCCCTTGTTTTCCGCCTATTCACTGAATAAATTACTGTTTTTATATGTGTAATCCCAACCTGGTATATGCTTTTTGACATGTTCATTAGTGCTAGCTAATACGTGTTCTTTTGCTGTTACCAGGCCTTGTTGATCAGATAATACATACAGGCGAAAATGTGAACATTGATGACTTAATCAAGGATCTTCATCCAAAGGTACATTGTAAATAACTGATTCATTATTTATATTACTTGCATGGACAACTGAAGGTGTAATGCTCCTTTTTTTTTCAGGTAATGCTAGGTATACCTTTGTTGGAAGGGAATAGCCCAGCTTCATGTTTTCCACGTATTGCTATTGGCTATGATGCTGTGTGCTACAGTTACATATGGAGTGAGGTCTGATCTAAGCATAACTCCAGTCATATTACACTCATCATATATTTTAAGCCATTAGTAAAGCACATTCACTTTTACAATGCAGGTGTTTGCGGCTGATCTGTTTGCATCAAAATTTAAAGACGACTTGCTAAATCAGCATGCGGGGTTGCGGTTTAGAAATAAGGTACTGACTAGTGCTCCTGAGGCATTATGTATTTCCATCATCGACTCATGGCAATTGTTCTAAAATGCTTTCATTATTCAGGTATTGGCTCCAGGAGGCTCGAAAAATCCCCTTGATATCATATCTGACTACCTTGGACGAGAACCATCATTGCAAGCTTTCATTCAGAACCGAACGAGGAACAGTCTGTGA</dnaseqindica>

External Link(s)

EnsemblPlants:BGIOSGA004996