Os11g0540900

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Revision as of 09:12, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os11g0540900| Description = Protein of unknown function DUF247, plant family protein| Version = NM_001189654.1 GI:297728438 GeneID:9269197| Leng...")
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Gene Name

Os11g0540900

Description

Protein of unknown function DUF247, plant family protein

Version

NM_001189654.1 GI:297728438 GeneID:9269197

Length

2614 bp

Definition

Oryza sativa Japonica Group Os11g0540900, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 11

Location

Chromosome 11:21612230..21614843

Sequence Coding Region

21612230..21612877,21614125..21614370,21614376..21614843

Expression

GEO Profiles:Os11g0540900

Genome Context

<gbrowseImage1> name=NC_008404:21612230..21614843 source=RiceChromosome11 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008404:21612230..21614843 source=RiceChromosome11 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgggtgaggaatcagctgttagagcggaggagattggcaaggtgacagtagagatagagaagttgattgctacaaacaacgccaatgccctgcttgagaagacgacgacggcgcggcgatccaagacgacgaaggggccctccatctaccgggttccggattacatcaagaagacgaccaacccggatgcctaccggccgcatctggtgtcattggggccctttcaccacggcgacaaggcattgctcggcatggaggcgcacaagcaccgagcggtggcgcacatggtcaagcggagcgggaagccactgcgggagttcatgactgccgtcaaagaggtagcacaacaactgcgaggcgcttacgagaacctagataagaagtggcacgaagagcggttcgtcgagttgatggtcatcgacggctgcttcttgctggagattatgaggacatttagggctttccgtcgtggaggggaagtagtagattatgacgattacggtcctgacgaaccgatcttcagcaaacacggctacctatacttgcgctgtgatattatgtccgatatgctcacactggagaatcaggtgcccctgctcctcctccagacgctctggcatgttatggatcctgaaaaactaattcaggaagatggactgataagcaagcgcgtgctagaatttttcggcccgttagtcgcggaagtcaaggaccccctccaggggaacgaggggatccaccctctggatgttgttcagagaagcgtgggtggtaatcgtcggcagtgccgggagtcggccaaggagtactctgtcatgccctgtgcctcggatctccacgaggcaggaatctacttcaagttgagtcccgctcctaacggattcgtagaggcggtttggacgcggcgtactaagcatcccgcggatgaccctgtacgacaacgccgagcgcgtgttcctcaacctgatggcattcgagcggctccacccgggcgccggaacgacgtgacggagttcgtgtatctcatggacaacctcgtcgacaccgccgaggacgtggcgctgctcaagtccaaagggatcatcaagagcgggctgggcagcgacgaggccgtggtgaacctgataaacatggtcctgaccagaggggcggtgatgagcagggacagcagcctccgggacgtgctgcaggacgccaacgcgcaccgcgacaggacgtggaacaagtggagggctagcctcatacacacctacttcagcaacccgtgggtgttcatctcgctcgttgcggcgatcatcctgctggtcgccaccctcttgcagaccgcgtacactgttgtgcccttctaccagaataagtaa</cdnaseq>

Protein Sequence

<aaseq>MGEESAVRAEEIGKVTVEIEKLIATNNANALLEKTTTARRSKTT KGPSIYRVPDYIKKTTNPDAYRPHLVSLGPFHHGDKALLGMEAHKHRAVAHMVKRSGK PLREFMTAVKEVAQQLRGAYENLDKKWHEERFVELMVIDGCFLLEIMRTFRAFRRGGE VVDYDDYGPDEPIFSKHGYLYLRCDIMSDMLTLENQVPLLLLQTLWHVMDPEKLIQED GLISKRVLEFFGPLVAEVKDPLQGNEGIHPLDVVQRSVGGNRRQCRESAKEYSVMPCA SDLHEAGIYFKLSPAPNGFVEAVWTRRTKHPADDPVRQRRARVPQPDGIRAAPPGRRN DVTEFVYLMDNLVDTAEDVALLKSKGIIKSGLGSDEAVVNLINMVLTRGAVMSRDSSL RDVLQDANAHRDRTWNKWRASLIHTYFSNPWVFISLVAAIILLVATLLQTAYTVVPFY QNK</aaseq>

Gene Sequence

<dnaseqindica>1..648#1896..2141#2147..2614#atgggtgaggaatcagctgttagagcggaggagattggcaaggtgacagtagagatagagaagttgattgctacaaacaacgccaatgccctgcttgagaagacgacgacggcgcggcgatccaagacgacgaaggggccctccatctaccgggttccggattacatcaagaagacgaccaacccggatgcctaccggccgcatctggtgtcattggggccctttcaccacggcgacaaggcattgctcggcatggaggcgcacaagcaccgagcggtggcgcacatggtcaagcggagcgggaagccactgcgggagttcatgactgccgtcaaagaggtagcacaacaactgcgaggcgcttacgagaacctagataagaagtggcacgaagagcggttcgtcgagttgatggtcatcgacggctgcttcttgctggagattatgaggacatttagggctttccgtcgtggaggggaagtagtagattatgacgattacggtcctgacgaaccgatcttcagcaaacacggctacctatacttgcgctgtgatattatgtccgatatgctcacactggagaatcaggtgcccctgctcctcctccagacgctctggcatgttatggatcctgaaaaactaattcaggtacactcaatataatcccagtcgaagaaccagcactacatatttctctccatatatattttctttggggtattcaattaggaatttaggattgagatcgagtactatccctgaactagagccagaaaacaatcatttctaaaactacttcctccgtttcatattataggttgttttgacttttcttttcctatttaaactttgttaggtttgacaaaaattatacacaaaagagtaaagtgcacggatggcccctaaacttgtgcgagtatatatatgtcgtctagttacttgaactctcaaaatgcattttttttcctaaatttgtcgtgggtatcatatagatccaaacaggctccaaaacctgctccgtgtactgatgtgatatgtcatgaatggtggcacctactcgtattagtggaacctagtatatgtcagtcatatataaaaaaaattaagaacatatttttttcctcttgtttttcttatttttttaaaaaattatctcctctctttttaaattttattgtttctacgtgcctgtatcacactaatgcgtaagcaccaccgttgcatgacatgtctgctcatgaagccggttggagcctgttttgacctatatgacatccatgacatgtcagggacctagatgacacacctggataaaattagcaatatctaaaacactaaattagttttattaaatctaacattgaatatatttgataataatttgttttgtttgaaaatttttaaacttagtttaactaggaaaaaagccaaaatgatttataatatggaacggagggagtagattatatcacactttgctagccgtgggatagttcaattaatacacaaattaaagagctttgaaattgacaagtggattaaatacaacaaaaagaaagacaagctaatcccctttccattaaacaaagaaacggcaatgacttaattaattacaactggcgatactaagttgacatattttatcacatgttacttaaacaaacgtgttttgcacaggcactaacccctgtgcggagcagtacatgttgaatctagctactagcgagctagttagtagatagattcatgtgggtagcagtattttcgatgtccaaatctatattacctagctgcgtactctgacgtacgtaatgacattttcatgatttcatgaatataaatcaagatagatatacaaattttgaaattttactaatgctctcgtcatgtcacaggaagatggactgataagcaagcgcgtgctagaatttttcggcccgttagtcgcggaagtcaaggaccccctccaggggaacgaggggatccaccctctggatgttgttcagagaagcgtgggtggtaatcgtcggcagtgccgggagtcggccaaggagtactctgtcatgccctgtgcctcggatctccacgaggcaggaatctacttcaagttgagtcccgctcctaacggattcgtagaggcggtcaggtttggacgcggcgtactaagcatcccgcggatgaccctgtacgacaacgccgagcgcgtgttcctcaacctgatggcattcgagcggctccacccgggcgccggaacgacgtgacggagttcgtgtatctcatggacaacctcgtcgacaccgccgaggacgtggcgctgctcaagtccaaagggatcatcaagagcgggctgggcagcgacgaggccgtggtgaacctgataaacatggtcctgaccagaggggcggtgatgagcagggacagcagcctccgggacgtgctgcaggacgccaacgcgcaccgcgacaggacgtggaacaagtggagggctagcctcatacacacctacttcagcaacccgtgggtgttcatctcgctcgttgcggcgatcatcctgctggtcgccaccctcttgcagaccgcgtacactgttgtgcccttctaccagaataagtaa</dnaseqindica>

External Link(s)

NCBI Gene:Os11g0540900, RefSeq:Os11g0540900