Os11g0544500

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Revision as of 09:12, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os11g0544500| Description = Protein of unknown function UPF0016 family protein| Version = NM_001074585.1 GI:115485818 GeneID:4350683| Length = 4...")
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Gene Name

Os11g0544500

Description

Protein of unknown function UPF0016 family protein

Version

NM_001074585.1 GI:115485818 GeneID:4350683

Length

4796 bp

Definition

Oryza sativa Japonica Group Os11g0544500, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 11

Location

Chromosome 11:21877252..21882047

Sequence Coding Region

21877555..21877620,21877740..21877844,21877934..21877984,21878248..21878313,21878593..21878753
,21878921..21879017,21879387..21879434,21880044..21880227,21880318..21880471
,21881687..21881798

Expression

GEO Profiles:Os11g0544500

Genome Context

<gbrowseImage1> name=NC_008404:21877252..21882047 source=RiceChromosome11 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008404:21877252..21882047 source=RiceChromosome11 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcaacggccatttccgtcggcgtcgcagtgccagccgccagcaggaggcgcgaggatggggcagggccgccgctgcttctgcggcggcggtgcctcgtggaaggacaagtgagatgtaggttaccatggttgagaccaatacggcacaatgttagagtgcagacatccaatgtaaatgttggagctggaagctatgaaggtggcgaagcaggtagccatggggaacatttggatagttctgctaccagagattcaaacaaaccaacaaaaccaccttcaggatctcgttaccctcaatccattgctgcagtgctacttctatgtgctctggcatccgcttttattgttttctttaaaggacaaccatctgcagttgtagcgatgcttgcaaagtcaggtttcacggcagcatttacactgatttttgtatctgagattggggataagacatttttcattgctgcacttcttgcgatgcaatatcagagagcattggttttacttgggtcaatggctgctctttccctaatgactattgtgagtgttataattggaaggatttttcagtctgtaccagcacaatttcaaacaacactacctataggagagtatgctgcgattgctctcctggcattttttggtttcaagtcaataaaagatgcatggcaacttccagataatgcaaatggaaaccttcagggaaactctgaatctggggagctggctgaggctgaggagcttgtcaaggagaaggtggctaaaaagttgactagtcctcttgaggtcctttggaagtctttcagccttgttttctttgcagaatggggagatcgctctatgctggctacaattgcgttaggtgctgctcagtctccttttggtgtcgcaagcggagccatagctggacacttggttgcaactttccttgcaattgttgggggagcattccttgccaactacctatctgagaagctggttggcctgataggaggagtactttttttgctgtttgctgttgccacattttttggtgtattctaa</cdnaseq>

Protein Sequence

<aaseq>MATAISVGVAVPAASRRREDGAGPPLLLRRRCLVEGQVRCRLPW LRPIRHNVRVQTSNVNVGAGSYEGGEAGSHGEHLDSSATRDSNKPTKPPSGSRYPQSI AAVLLLCALASAFIVFFKGQPSAVVAMLAKSGFTAAFTLIFVSEIGDKTFFIAALLAM QYQRALVLLGSMAALSLMTIVSVIIGRIFQSVPAQFQTTLPIGEYAAIALLAFFGFKS IKDAWQLPDNANGNLQGNSESGELAEAEELVKEKVAKKLTSPLEVLWKSFSLVFFAEW GDRSMLATIALGAAQSPFGVASGAIAGHLVATFLAIVGGAFLANYLSEKLVGLIGGVL FLLFAVATFFGVF</aaseq>

Gene Sequence

<dnaseqindica>4428..4493#4204..4308#4064..4114#3735..3800#3295..3455#3031..3127#2614..2661#1821..2004#1577..1730#250..361#aaaggaaagacgaagaagaagaactgttggcacgtgtgcgctaccgaactcccgaagccgataagccgcccgcctcctctccttctcgtcgccgtcgccggcgccggctcagcgcctccgccctctccccccacgccgccgcctcccccttcaccctctacccccaccgcgggcgcctcccctcccactgccgccgcctcctcctgctcctcctcctccacgtcaccgacgccggagcttcttcgatccatggcaacggccatttccgtcggcgtcgcagtgccagccgccagcaggaggcgcgaggatggggcagggccgccgctgcttctgcggcggcggtgcctcgtggaaggacaaggtctgggcatctctatgtcctgctcccttcctcctcttctctcacgccccactagagtaataatcagggatcttgtgctcgaacgcttcttgcatggttgatgatcaggccagtcagtcaatgtggctcaatcaaacatatgtggcatccttactagtacagtaatctaggtcttgtttagattgtagccaaaataaactttaccaatttttggcaatttggcaatactgccaagttttggcagggtttcttatgtatttaccagagtttggtaaaaaaactaaatagatgcacatttttgacaactttaccaaaaaatgttatggtttgaaatgacatcaatctaaacaacccctagtctaatttcagatagtgtcatggaggaagggccaaaatgtttcagatagtgccatagtggcatagagaaacccaaaattatgggcgttgcattcataataaatgtaaatgtttagcctatgataagttttagaccccaattgttgtttcaagctagcatcaggttttgccgatttcaggttatcgatctcctaagttgtgtaggatggaaaaattagataggttctttattgtatgcacaggagagataatttggtgggctttggattactatgccattgcaaattccaagataaataaattatgtttgttctcattgaccagacagcaagatctcgtccacaattagtcaattacacatggatcacatctcatcctaggcgctgccatgaattccagcttgcttgttgtttcctgtcaccacatggatctgaaatagtaagcacagatggaatttgaatgcgacattgaggagtgtggcacaaaaagcatcaaggagatgtttttgttttctgtaaatataaataccatgttttctgggattgtttactcatcaaattctgtcaaccttttgaaaaaaaaaacaattcttgtccatgtctcagatcaaatacaagtatcattgtttctttgtgaaactcgttgatgaagttgatcgtattgtttgttatggattccaactctacacattcatccgcaattcattttaatgtcaaaggagccttagattcatgccaccacctaaaaccatcttcccttgctactttcaggcataatgactccattttgtaagatttcttgtttgaatttggacaggcatcgttatactattttgattgcatagttttattttaacagtgagatgtaggttaccatggttgagaccaatacggcacaatgttagagtgcagacatccaatgtaaatgttggagctggaagctatgaaggtggcgaagcaggtagccatggggaacatttggatagttctgctaccagagattcaaacaaaccgtgagttcctatactctactatgtttaactcaatcttcatcccaatctcttctaaatagcattaaactgcacattggctttggttggcagaacaaaaccaccttcaggatctcgttaccctcaatccattgctgcagtgctacttctatgtgctctggcatccgcttttattgttttctttaaaggacaaccatctgcagttgtagcgatgcttgcaaagtcaggtttcacggcagcatttacactgatttttgtatctgagattggggataaggtatacagtccattaaagttgactttttctcttgccttatccttctagatgcattacagatgctctttaccttcttttgactaattatgaagtctggattctatggttcttagagttttcattctgatgctccatttctgaaataaataggtcatccacatttgctatgtccaaccaaatgtctatagtttcatttctttcccatgctacatcacagtatttattgttgcaatttgatagatgatgagaccttcttgttgttttctatacatgaagctaagcagtaagtagttttatgtacttttatgctcctaaattatgatatttcaaggctttacaacttgagtgtcaactcagtcaaattggatttgtattatcttcatagtgaattactcatttactgttttggagtcatacctactgtagatcctatttttctccttgtattactatcatttagttgtagctacatgatcttcagtgttctcctagcttggagctatgttcaagaattgtttttttttaccattctgtaaagcttatgctatatgcttaatatgtttgggcaagcaaagaaattttgttgcgctgacccttcttttgttgcagacatttttcattgctgcacttcttgcgatgcaatatcagagagcattggtacgtttgggcatggtgatttagatctgtctcaagttattgtccaattatttgagttgtttcttttctcttcacagtgttgctctcttcttttaatatgttcttccatgtaaaaaacgattaataataaaatgtcactaccgaactaaaagatacaacctcaaaatgatggttttgtcatttaagaaaaactaaagacttgttttctacctataactgaattatattaagattctccgccgggcaactgaattatattaagggtttagagaaatatatttttccctcaattttcatttttattttagagaatgtctccctttggctagtcactctaacatttatgtgcctgtgtaattttgtgaacaggttttacttgggtcaatggctgctctttccctaatgactattgtgagtgttataattggaaggatttttcagtctgtaccagcacaatttcaaacaagtataaactactatgctttctctggcaatatctctatgtaatttctagtactcatatttggcattctttctgcacttgggtttactttttggaagtttccataagtatctctgatatcctaatggacatacttgttgatacatgattattattatttttttttgcagcactacctataggagagtatgctgcgattgctctcctggcattttttggtttcaagtcaataaaagatgcatggcaacttccagataatgcaaatggaaaccttcagggaaactctgaatctggggagctggctgaggctgaggagcttgtcaaggagaaggttgtgctttttcagaatgttgattctgtgaagagtttttgtcaaatcatataaatgttttgcttttgcatttactttctgcaaagctggaagcatgcagtagccaactaaatatttggaacatttgcatctgctgctcttgagaatttattaaaaccatcttcttcttttcttttttttttttttggggggggggtggcaaaacttaagtatcaaaataagttttctgctcttcaccttttttttttttaactgaaggttgtttctactttgtggcaggtggctaaaaagttgactagtcctcttgaggtcctttggaagtctttcagccttgttttctttgcagtaagttgattcccatgtacaataaggctttgactaacattgctgtactaatgtatcatttatgccatacaaaagcataatcatacgaaagtactccgaatatgaatctaataacataaattttgtgtcacaaaaattatgttctaataggttattggttggtcaaagtcttgtttgaacgaaacaaaatagctgttctattttttaacaaagggcgtagtgaactaacaccttattgctcaccaaatgatttttactggcaggaatggggagatcgctctatgctggctacaattgcgttaggtgctgctcaggtttgttttggacttggcaacagaatgcatatgtataatttagtttagatttgtattaccataaaaaaaacatgtctttgtttttgtagtctccttttggtgtcgcaagcggagccatagctggacacttggttgcaactttccttgcaattgttgggggagcattccttgccaactacctatctgagaagctggtaaaagttttttgtacaattaacttggtttcttgttttggtttaatagttaatgctctcggtattattgtgttttaggtttttgggtatttcacttacatgaatgtacaattttccaggttggcctgataggaggagtactttttttgctgtttgctgttgccacattttttggtgtattctaatatctgaagaatttgtagcttgtaaaggattctgtaggtcaatttaatcctattttaaggttttaagggcaaaactgggccttgtccttgttgtttgtaactagtaggcattatcctccttttcaggagcgattcctttactattggaaaacaaattgacgtgaacacaatcaacacacacgcaagctgagctgcagcacgcaaactatcagctatatgccctagagagacgaattgtatcatatactatagagtatatactatgtttataatgaaatgaataaagtattattctgttttgtg</dnaseqindica>

External Link(s)

NCBI Gene:Os11g0544500, RefSeq:Os11g0544500