BGIOSGA020562

From RiceWiki
Revision as of 12:48, 26 June 2012 by 127.0.0.1 (talk) (Created page with "{{IndicaGene| GeneName = BGIOSGA020562| Description = Putative uncharacterized protein| Definition = Oryza sativa Indica Group BGIOSGA020562, complete gene.| tag = OsI_244...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

BGIOSGA020562

Description

Putative uncharacterized protein

Definition

Oryza sativa Indica Group BGIOSGA020562, complete gene.

LocusTag

OsI_24406

Ensembl Transcript ID

BGIOSGA020562-TA

Ensembl Protein ID

BGIOSGA020562-PA

Length

2177

Source

Oryza sativa Indica Group

 ORGANISM  Oryza sativa Indica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 6

Location

Chromosome 6:31742396..31744572

Sequence Coding Region

31744068..31744572,31742396..31743987

Genome Context

<gbrowseImage1> name=IndicaChromosome06:31742396..31744572 source=RiceIndica06 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=IndicaChromosome06:31742396..31744572 source=RiceIndica06 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>ATGGAGAATATGTTGCGTAACTTCTCGAAACTTGTCCATCTACGCTATCTACGGATTGTGAAAGGGTATTTTCAAGAATTAAGTCTATCCAACATCATTTCAAGATTTTATCACTTGAGGATCCTTGATGTACGGCAATGCAGTGGTCACTTTAATTTACCGAGTGATATGAGTAACCTTATAAAGCTGCGGCATTTTCTTGACCCAAATGATTCTTTTCACTCTGCCATTGCTAATGTGGGAAAGCTGAAATGCTTACAAGAATTAAAGAGATTTGAAGTCAAAGGACAAGCTGAGGCATTTGCATTAAGACAGATAGGGCAGTTGGAAGAGCTAAAAGGATCACTGTGCATTTATAATCTTGAAAATGCAGAGACAGGGGAGGAAGCAAACCTTTTAAACAAAAGGCACTTACACAAGTTAGTATTAGTTTGGTCTGATGATTCTTCACAAGCAGAACATGTTCTTGAAAATCTTAAACCACATAGCAATCTTGCCCATCATGGTGAGTTGTGGTTGGTTAATGCGTCCGGTGAAGAATCCTTGGGTTGTACAACAAGTCAGAGCTTTCAAAAATTAAAAAGGTTAGAGCTGCTTGGCATACCACAGCTAGCAAAATGGGTTGGAAATGATGCTTCCCATGTGTTCTCCTTGCTAGAGGTGTTCATTATAAGAGATTGCCCAGAACTTATGGAGTTGCCATTTTCACATTCAACTTGCCCTCGATCAGGACAGGAGATGAACTTGACCCAATTCCCTACACTAAGGGAGCTTGAGGTTGTAAATTGTCCAAAGCTGTCATCATTTCCTCACATTCCTTGGACAAGCTCTCCATGTCGTGTTCTTATTGATGAAGTGGGATCAGATTTTCAGCGGTTGGATTACTCAAAAAATAACCAATCTGAATTTTGCTTGAAAGTTGTGGGAAAGGATGGCCATCTAGATATGTCATTCTGGAATGTATTGGCATTTAGTAATCTAACTGAACTGAAAGTGTTGTATTTGAAGAAATGTCCTCCTTTGCCACTGAAACATCTCCTAGTGCTATCATGTTTGAGGAGTCCCACGATACATGATTCAAGTAATGTCTTGTTGAATGTTGAAGCTGAGAACACTGGCGGCTACCAATTTCAGATTGAGGGTCTCAGTATCGATGACTGTAGCTGTAGCGGGAAGGAACTGACGCTGTTGCTGTCTCTTTTCCCCAAGCTGTCAATGTTTTCATTACAAGGTTGTGGGAAGATAAGAGTGCTTGGTGTGGCGAAGGAGCAGACAATGGCAATGCCAGCATTGTCGTCGTCACCTTCTGGTCATAAGTTGGAGGATGCACATATAGGACAGGAGCAGGAGCAGGAGCAACTAAGAGGAGAGGATGAGAAAGCAGCAGCTGATGCAGGACTGCTGCTCTTGCCTCACCAACTTCAGGAGTTGAACATCAGCGAAATCCCAGAGCTGATCCTGCAGTTTGATTCTCTCGTAGATGGCATGGCAGGAGGCTTAAGAAGCATAGGAGGAGGATTACAAGGCCTGCACTTCCTAAGAACACTCACTATTCGGGGTTGCCCCAATTTCCTCTCCTCCTACTACTCGTCCTCCTCCTCGTCTTGCTTCCCATTTCCATCCTCCCTGCAATATCTGCATCTTGATGGTGTGGGAGGCATGGAGACTCTGGCGCCTCTCTCAAACCTCAGCTCTCTCAAATGTATGGATTTAAGAGGTGAGGACTTGTCTTCTCTCCTCGCCCATGGCCAACTCACAAACCTGAACATCTTCGAGACCCCCAAATTCTTCGTCGGGTGTGGCTCTGACTCCTTGCGGCTGCAGTGCCTCCAAACAGATGACATCACAAAGGTCCTTGCCGCGCCCATCTGCAGCCTCCTTGCTTCCTCACTCACCAGCCTAACCATTAGTTGGAACGACGAGGTGGAGCGCTTCACAAAGGAGCAAAGCGCGGCACTTCTGCTCCTCTCCTCCCTCCAGGACCTTGAATTTTGGTACTGCTCGGAGCTGCAGTCCCTCCCCACTGGGTTACACAGACTCACCAGCCTCAAGAGATTAAAGATCTGGTCCTGTCCAGCCATCCGTTCGCTGCCCTAG</cdnaseq>

Protein Sequence

<aaseq>MENMLRNFSKLVHLRYLRIVKGYFQELSLSNIISRFYHLRILDVRQCSGHFNLPSDMSNLIKLRHFLDPNDSFHSAIANVGKLKCLQELKRFEVKGQAEAFALRQIGQLEELKGSLCIYNLENAETGEEANLLNKRHLHKLVLVWSDDSSQAEHVLENLKPHSNLAHHGELWLVNASGEESLGCTTSQSFQKLKRLELLGIPQLAKWVGNDASHVFSLLEVFIIRDCPELMELPFSHSTCPRSGQEMNLTQFPTLRELEVVNCPKLSSFPHIPWTSSPCRVLIDEVGSDFQRLDYSKNNQSEFCLKVVGKDGHLDMSFWNVLAFSNLTELKVLYLKKCPPLPLKHLLVLSCLRSPTIHDSSNVLLNVEAENTGGYQFQIEGLSIDDCSCSGKELTLLLSLFPKLSMFSLQGCGKIRVLGVAKEQTMAMPALSSSPSGHKLEDAHIGQEQEQEQLRGEDEKAAADAGLLLLPHQLQELNISEIPELILQFDSLVDGMAGGLRSIGGGLQGLHFLRTLTIRGCPNFLSSYYSSSSSSCFPFPSSLQYLHLDGVGGMETLAPLSNLSSLKCMDLRGEDLSSLLAHGQLTNLNIFETPKFFVGCGSDSLRLQCLQTDDITKVLAAPICSLLASSLTSLTISWNDEVERFTKEQSAALLLLSSLQDLEFWYCSELQSLPTGLHRLTSLKRLKIWSCPAIRSLP</aaseq>

Gene Sequence

<dnaseqindica>1..505#586..2177#ATGGAGAATATGTTGCGTAACTTCTCGAAACTTGTCCATCTACGCTATCTACGGATTGTGAAAGGGTATTTTCAAGAATTAAGTCTATCCAACATCATTTCAAGATTTTATCACTTGAGGATCCTTGATGTACGGCAATGCAGTGGTCACTTTAATTTACCGAGTGATATGAGTAACCTTATAAAGCTGCGGCATTTTCTTGACCCAAATGATTCTTTTCACTCTGCCATTGCTAATGTGGGAAAGCTGAAATGCTTACAAGAATTAAAGAGATTTGAAGTCAAAGGACAAGCTGAGGCATTTGCATTAAGACAGATAGGGCAGTTGGAAGAGCTAAAAGGATCACTGTGCATTTATAATCTTGAAAATGCAGAGACAGGGGAGGAAGCAAACCTTTTAAACAAAAGGCACTTACACAAGTTAGTATTAGTTTGGTCTGATGATTCTTCACAAGCAGAACATGTTCTTGAAAATCTTAAACCACATAGCAATCTTGCCCATCATGGTTGGGTGTTAACTTGTCTACCAAAAACTTGCAAGCTCTTCGTTTGGATAGCATACAGTGGAACAAATTTCCCCCTCTAGGTGAGTTGTGGTTGGTTAATGCGTCCGGTGAAGAATCCTTGGGTTGTACAACAAGTCAGAGCTTTCAAAAATTAAAAAGGTTAGAGCTGCTTGGCATACCACAGCTAGCAAAATGGGTTGGAAATGATGCTTCCCATGTGTTCTCCTTGCTAGAGGTGTTCATTATAAGAGATTGCCCAGAACTTATGGAGTTGCCATTTTCACATTCAACTTGCCCTCGATCAGGACAGGAGATGAACTTGACCCAATTCCCTACACTAAGGGAGCTTGAGGTTGTAAATTGTCCAAAGCTGTCATCATTTCCTCACATTCCTTGGACAAGCTCTCCATGTCGTGTTCTTATTGATGAAGTGGGATCAGATTTTCAGCGGTTGGATTACTCAAAAAATAACCAATCTGAATTTTGCTTGAAAGTTGTGGGAAAGGATGGCCATCTAGATATGTCATTCTGGAATGTATTGGCATTTAGTAATCTAACTGAACTGAAAGTGTTGTATTTGAAGAAATGTCCTCCTTTGCCACTGAAACATCTCCTAGTGCTATCATGTTTGAGGAGTCCCACGATACATGATTCAAGTAATGTCTTGTTGAATGTTGAAGCTGAGAACACTGGCGGCTACCAATTTCAGATTGAGGGTCTCAGTATCGATGACTGTAGCTGTAGCGGGAAGGAACTGACGCTGTTGCTGTCTCTTTTCCCCAAGCTGTCAATGTTTTCATTACAAGGTTGTGGGAAGATAAGAGTGCTTGGTGTGGCGAAGGAGCAGACAATGGCAATGCCAGCATTGTCGTCGTCACCTTCTGGTCATAAGTTGGAGGATGCACATATAGGACAGGAGCAGGAGCAGGAGCAACTAAGAGGAGAGGATGAGAAAGCAGCAGCTGATGCAGGACTGCTGCTCTTGCCTCACCAACTTCAGGAGTTGAACATCAGCGAAATCCCAGAGCTGATCCTGCAGTTTGATTCTCTCGTAGATGGCATGGCAGGAGGCTTAAGAAGCATAGGAGGAGGATTACAAGGCCTGCACTTCCTAAGAACACTCACTATTCGGGGTTGCCCCAATTTCCTCTCCTCCTACTACTCGTCCTCCTCCTCGTCTTGCTTCCCATTTCCATCCTCCCTGCAATATCTGCATCTTGATGGTGTGGGAGGCATGGAGACTCTGGCGCCTCTCTCAAACCTCAGCTCTCTCAAATGTATGGATTTAAGAGGTGAGGACTTGTCTTCTCTCCTCGCCCATGGCCAACTCACAAACCTGAACATCTTCGAGACCCCCAAATTCTTCGTCGGGTGTGGCTCTGACTCCTTGCGGCTGCAGTGCCTCCAAACAGATGACATCACAAAGGTCCTTGCCGCGCCCATCTGCAGCCTCCTTGCTTCCTCACTCACCAGCCTAACCATTAGTTGGAACGACGAGGTGGAGCGCTTCACAAAGGAGCAAAGCGCGGCACTTCTGCTCCTCTCCTCCCTCCAGGACCTTGAATTTTGGTACTGCTCGGAGCTGCAGTCCCTCCCCACTGGGTTACACAGACTCACCAGCCTCAAGAGATTAAAGATCTGGTCCTGTCCAGCCATCCGTTCGCTGCCCTAG</dnaseqindica>

External Link(s)

EnsemblPlants:BGIOSGA020562