Os11g0552000

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Revision as of 09:13, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os11g0552000| Description = Similar to Tyrosine aminotransferase| Version = NM_001074614.2 GI:297612015 GeneID:4350712| Length = 6613 bp| Defin...")
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Gene Name

Os11g0552000

Description

Similar to Tyrosine aminotransferase

Version

NM_001074614.2 GI:297612015 GeneID:4350712

Length

6613 bp

Definition

Oryza sativa Japonica Group Os11g0552000, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 11

Location

Chromosome 11:22368362..22374974

Sequence Coding Region

22368362..22368501,22368665..22368758,22368842..22368997,22369133..22369192,22369408..22369626
,22369781..22370060,22371452..22371783,22371879..22371918,22374498..22374565
,22374918..22374974

Expression

GEO Profiles:Os11g0552000

Genome Context

<gbrowseImage1> name=NC_008404:22368362..22374974 source=RiceChromosome11 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008404:22368362..22374974 source=RiceChromosome11 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgacctgtctgtgtttgggcagcaagttaaaagagtctgacaaagttaagctcatggtgaaactggatctgtcctgcctgcatggcatcaaagatgacatggatttctgctgcaagctggcaaaattccccattgcccccatcctctacctgcatcaagtacaactggcgcaagcaatggaggacggctccggcaacgggcggccgccggccaccgcggcggcgtggaacttcgagccgaacggcgcgctgctcgggctgacggcgctgtcggtgcgcggcgtgctgggcagggtcaaggccgggatggcggcgggcggcggcggagatggtggtggtggtggtgggcgggcggtgatcccgatgggacacggcgacccgtcggtgttcccgtgcttccggacgacggcggacgccgtggacgccgtggcggcggcgctccggtccggggagcacaactcctactcctcctgcgtcggcctcgagcctgcacggaggtctatcgcgcggtacttatcgcgagacttgccatatgagctatcagctgatgatgtgtacctgacaagtggctgtgctcaagcgattgagatcatctgctctgtcctagctcgccctggtgccaacatcctgtgcccaaggccagggtacctgttccacgaggcacgcgcagtgttcaatggcatggaggtcaggtactttgatcttctcccagagagtggctgggaggttgatcttgatggagtgcaggaacttgctgacaagaacacggttgcaatggttgccgagaccgcgaaaaagcttggcatctttgtcattgcagatgaagtgtatgcacatttgacgtttgggcagaataaatttgtgccgatgggggtgtttggctcagtagctccagttcttacgttaggatcgatatcgaagagatgggttgtgcctggatggcgacttggatggattgtgacgagcgatcctaatggcgtatttcaaaggaccaaggtagtggaaagcatccagagttaccttgatatctcggctgatcctgcaacatttatccagggagcaattccacaactcatagagaacacaaaggaagaattcttcgaaaagaccgtcgatgtcctaaggcagaccgcagatatttgttgggagaagctgaagggcatcagttgcatcacttgcccaagcaaacctgagggttccatgtttgtcatggtgaaactggatctgtcctgcctgcaaggcatcaaagatgacatggacttctgctgccagctagcaaaggaagaattggtgattcttttgccaggatgtgctgttggatacaagaattggctccgaatcaccttcgccatcgaaccgtcttctcttgaagatggtattgataggctcaagtccttctgctcgcgacatagcaagccgaaagttcaccggtctcttgaaacatga</cdnaseq>

Protein Sequence

<aaseq>MTCLCLGSKLKESDKVKLMVKLDLSCLHGIKDDMDFCCKLAKFP IAPILYLHQVQLAQAMEDGSGNGRPPATAAAWNFEPNGALLGLTALSVRGVLGRVKAG MAAGGGGDGGGGGGRAVIPMGHGDPSVFPCFRTTADAVDAVAAALRSGEHNSYSSCVG LEPARRSIARYLSRDLPYELSADDVYLTSGCAQAIEIICSVLARPGANILCPRPGYLF HEARAVFNGMEVRYFDLLPESGWEVDLDGVQELADKNTVAMVAETAKKLGIFVIADEV YAHLTFGQNKFVPMGVFGSVAPVLTLGSISKRWVVPGWRLGWIVTSDPNGVFQRTKVV ESIQSYLDISADPATFIQGAIPQLIENTKEEFFEKTVDVLRQTADICWEKLKGISCIT CPSKPEGSMFVMVKLDLSCLQGIKDDMDFCCQLAKEELVILLPGCAVGYKNWLRITFA IEPSSLEDGIDRLKSFCSRHSKPKVHRSLET</aaseq>

Gene Sequence

<dnaseqindica>6474..6613#6217..6310#5978..6133#5783..5842#5349..5567#4915..5194#3192..3523#3057..3096#410..477#1..57#atgacctgtctgtgtttgggcagcaagttaaaagagtctgacaaagttaagctcatggtatgaacttcacaaagttcaccatacatgttttctgttaacaatcctggtacagagttaccttaccatgactagattaacatcttacaattcaagttgaatttcaggtcaattggtactcatcacaaaacttgccatatgagctatctgctgatgatgtctacctgacaaagtggctgtgcacaagcaattgagatcatctgctctgtcctagctctgcctggtgccaacatcctgcgcccaaggctgggctaaacctgagggttccatgtttgtcaaatatgctgcttcataatacagagaatcgaagggaatttctcacggtggatgatgtttggttggcttggtgaaggtgaaactggatctgtcctgcctgcatggcatcaaagatgacatggatttctgctgcaagctggcaaagtaagaatgtgtggttcttttgccaggtagtacaatcctgattcctcccatacacatgatttaacttgtaaaattctagctcacctcatctgtttggttcaatatgttttatttccacaatgataagtgattcagagttgccttcagtttgaaatattaacacgtttgcaaaagaaaattgtatttcttaaaaaagtggataaatatgtgatatatcaccacaatcatacaagttcatattcaacttagtatacgaccgaaaaaaaaatttgactataaataatacgcactatttacaaatttgttatttacagtcaaactttttggcgacaaacacaagcacagtgggatgtatcttcgagtgacgaaaatctgcctccctagaaagttcttttttttcctatcacttagcagcaggctcatttgcagcgttaagagatgtgtgtgctctggcctcttggggtctccggctggcttggttctaaaagtttcaatcagccggtattttttagtctttcatgttgttgaggtcacacaaaatggtgggatggcatcatttcaattttcaagtgcgatctgcatggatcttgtgttatatgtgctgaatactctgtaatccagaaggtttcccactttccctgctcttctgtttcaaaataaaatcttgctacctctattttttttaatatataacaccgttatcattttatactgtgtttgaccatttgttttattcacaaaattgaagtaaatatcttttcttttgttgtggcttgatgtatcactaaaggaattttaagtaccttatatttttaagatttgcatatcttttttaataatgcagttaaatattataataaaagtcaacagcgtcatatattaaataacaggagaagtacttattttcacaactttatgcattattggtctatagtcttttttttttcgtgcgtgcacaccattcaattagtaggaagcaaacgagtttacacaggacgaacgtcagaagcgcatgcagtatggagaaaaatatcccaagaggattaaaaaaaaacctaatctcccaaacaggctcctaagagtgatgcacccgccaagatccaccgcctcctacatgatttgatgaacgatgacagaaacaaagtaaagggtttctcttgaaaacctcctgatgttgtgttccttcccggcccgtttggttggggggagtttttagtagggattaggagtttagatggatgagcctatttactgttttgtttggttgtgagacatgtgaattttggtgggatagtgatggtgaattgagaaataaactccctccttttcaatacctgggcaggggtggtaattgggagggaattcctcctttacttcgcataaacaaatctcagccatccattttcattaataatctaatctccaactaatctctctatcaatttccaccacctctaccaaacaagagactgggatgaaaaatcaaattcccatcttaatctcaccatcaattccttcgtgtaaactcccaatccccttccctcgagttgccaaacaagccgtccaaagctatcgagagatgagcaggagcgaaccacaatgacgcaacacatatatctattcgtgtcacaaactttacatttcataccacttaaaaaagtattaatatgattttttaagcaactttttatagaaagtttttttaaatatatacaatatttagcaattcgggaaacgtgtgtttagaaaataatattcttttttcttctctttgttcaactctcaaaccgcctaaaacttctctctccgtatcacgatcgccagatatatcacacgtcatgcgtggattctacacgtggagagccacgtcagcgctgatgcaagcgcttatgtcgtcgtacgtgctagctcttggcatatatcgatcgtcgtcaattaattatcatatgaattctggctctcgatcgatttagtggcaactactccaaagcgagctagtcaaataatcaagtcaaatctgccctctttgatgatgtaactccggattgtctctctgccattgcttgtcgatttgcaggttaatgaaacaaactattctaatttggctttgttcatgtttttgaacaaacaaaggaagtctgtctttgcttattgctggaagtatcactcgatccgttttcaaatatctatcgttgttgtatattattgtttcaattttgacggtaaattattcttaaatggttagattagactaacaggaattccatgcttacattaggaatccaatacgctgaaaatatgatacccattttacaagacgttttgatctctttatccttcatccttaaacacatatataaatccatgcatgaatttattcaaatcctaaagcgtatttgtaacttgaatcagagaaagtatctttttaggtgtttgcaaatcttttttttttttttaaaaaaagacgagcagttaaagtttaaagaaaataatggcaggtgacaggctagtatttgaaaatgaagtgagtaccagcacaatttgcatttgttttttcaaatttttttttgtttatatagattccccattgcccccatcctctacctgcatcaagtacaagtgaaccttgagcttcagactttttcctacatcaaatcctactatttgtcaccactcaaaataaacattttttttcaaaaaaaaaaaatccgaagctggcgcaagcaatggaggacggctccggcaacgggcggccgccggccaccgcggcggcgtggaacttcgagccgaacggcgcgctgctcgggctgacggcgctgtcggtgcgcggcgtgctgggcagggtcaaggccgggatggcggcgggcggcggcggagatggtggtggtggtggtgggcgggcggtgatcccgatgggacacggcgacccgtcggtgttcccgtgcttccggacgacggcggacgccgtggacgccgtggcggcggcgctccggtccggggagcacaactcctactcctcctgcgtcggcctcgagcctgcacggaggtcagaaaatcgccatcaattactctctcagccccatcggtttcatttcataataagctaaaatgggttattagggagtactccctccttccctaaatgtttaccgccgttgacttttttaaacatgtttgacatttcgtcttattcaaaaacttttgtgaaatatgtaaaactatagtatacataaaagtatatttaacaataaatcaaatgataagaaaagaattaataattacttaattttttttgaataagacaaatggtcaaacatgtttaaaaaagtcaacggcgtcaaatatttagggatgtagggagtacaaattaatttgtaggtaaaacttttgtatatgtgttctaaggttgtgtttggaggtaacccatgcctcccgacacgcaaaacgatgtaatagtttagcatataattaattacgtattagctgaaaaaactttaaaaaatagattatgatgattttttaaagcaactttcttattggaaatttttttaaaaaaatataccgtttagcagtttgggaagcgtgcgcgtggataataaagtaggggaagttgggaacttacataaacacaacataagcaacttaaaaaccaatgcaaaaaaagtaagttaaaaatatcttagaatcaacttcagaattaaatttaaaatttaaattttggctttgactttggtttattaggccaaccgatggtgccctctctaattagcacctgttcatgctgcaaatgttgctgtattaatccgcttctaaaattctttcttttctattctacatggtaaagatgaaatttccttagaatttaccttacgggatgaaaaaagatcaaagctttgcgttttgttcattctgaacaaattgaccaaatcagcggaaaacaatgatctttaggcaaaaacaattttggacatcaactggtttggctgtccataaaaagggagcaatggtactggatttgtcaaatgattaggttgttcaggcatgatataaaccactggtggcctcacactgtgtgaccactaactgacaacagaatcactatggagtaagcataacaaacctgacagattactgtggagtaagtgcatatggtccaccctaaatttcaactatgggttatataagacttaaaagtgatcatgtggtccactctgaaatttcagagtggctgaatttgtactcttaagtcttaacacacaatcctcaatcatgacatctgtgtctaggcagcaaatttaaagagtctgacaaaatttaggctcacatagtgttgatttcacaaagatcaatgtacctgttttactgttcacaatcctggcacatatcttcctcaccatagctagacataaaaatcctaaaactgaagttgaattccaggtctatcgcgcggtacttatcgcgagacttgccatatgagctatcagctgatgatgtgtacctgacaagtggctgtgctcaagcgattgagatcatctgctctgtcctagctcgccctggtgccaacatcctgtgcccaaggccagggtacctgttccacgaggcacgcgcagtgttcaatggcatggaggtcaggtactttgatcttctcccagagagtggctgggaggttgatcttgatggagtgcaggaacttgctgacaagaacacggttgcaatggtcattatcaatccaggaaatccctgtggcaatgtctacacttctgagcatttggccaaggcaagtactgagttaattagtcatttctttcctactggggatcattttgggggaaatttcagtgtgtttgatcaaggatcagtgtttcttgtaggttgccgagaccgcgaaaaagcttggcatctttgtcattgcagatgaagtgtatgcacatttgacgtttgggcagaataaatttgtgccgatgggggtgtttggctcagtagctccagttcttacgttaggatcgatatcgaagagatgggttgtgcctggatggcgacttggatggattgtgacgagcgatcctaatggcgtatttcaaaggaccaaggttgtttaagtttaacttcaaacccttttcatacaagtattgttgcaatcaacaacaaaaatcaaggatatttgtagtttattcaacaaagaatgcagatattgcagactagcagcaatctaagcttaatgaaatagcttccactttttggtattatctgaaacctaacccttggaaacggtcaaacaactcttagccttgatcccccttttcaggtagtggaaagcatccagagttaccttgatatctcggctgatcctgcaacatttatccaggtaactaaaattgcctgatcacatctcttctaaagataaattgtacataacttggcagaataaaaagatcagtggagatacataatatcaaaacataatgatttacattctaccttgattaattttttttttcagggagcaattccacaactcatagagaacacaaaggaagaattcttcgaaaagaccgtcgatgtcctaaggcagaccgcagatatttgttgggagaagctgaagggcatcagttgcatcacttgcccaagcaaacctgagggttccatgtttgtcatggtcagtcaaatattctgcttcacaatgaagagaatcaaagggaatttctgatggtgtatgatgttttggttggcttggtgcaggtgaaactggatctgtcctgcctgcaaggcatcaaagatgacatggacttctgctgccagctagcaaaggaagaattggtgattcttttgccaggtacattcctgaatcctgattcctcccatgcacatcatttaactttcaaaattctagctcattccatctgttcggtacaatttgttttgtctctacaatgatcagtgattcagaattgccttctgtttgaaatattaacaacttggtaaaaaaaattgtccaggatgtgctgttggatacaagaattggctccgaatcaccttcgccatcgaaccgtcttctcttgaagatggtattgataggctcaagtccttctgctcgcgacatagcaagccgaaagttcaccggtctcttgaaacatga</dnaseqindica>

External Link(s)

NCBI Gene:Os11g0552000, RefSeq:Os11g0552000