BGIOSGA020825

From RiceWiki
Revision as of 12:52, 26 June 2012 by 127.0.0.1 (talk) (Created page with "{{IndicaGene| GeneName = BGIOSGA020825| Description = Putative uncharacterized protein| Definition = Oryza sativa Indica Group BGIOSGA020825, complete gene.| tag = OS06G06...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

BGIOSGA020825

Description

Putative uncharacterized protein

Definition

Oryza sativa Indica Group BGIOSGA020825, complete gene.

LocusTag

OS06G0634500

Ensembl Transcript ID

BGIOSGA020825-TA

Ensembl Protein ID

BGIOSGA020825-PA

Length

4974

Source

Oryza sativa Indica Group

 ORGANISM  Oryza sativa Indica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 6

Location

Chromosome 6:26942201..26947174

Sequence Coding Region

26947096..26947174,26946856..26946988,26946008..26946079,26945864..26945929,26945716..26945787
,26945549..26945620,26945379..26945450,26945227..26945292,26945068..26945133
,26944656..26944975,26943749..26944008,26943332..26943603,26943100..26943235
,26942857..26942996,26942592..26942748,26942201..26942356

Genome Context

<gbrowseImage1> name=IndicaChromosome06:26942201..26947174 source=RiceIndica06 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=IndicaChromosome06:26942201..26947174 source=RiceIndica06 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>ATGGCGGCCGCCGCTTTGGCCGGCGTTCTCCTCCTCGCCCTCGCGGCGGTGGCGGGAGCCGACACCGACGGCGGCGACGCCGCGGCGCTGGGGAATCTGTACTCCTCCTGGAATAGCCCGGCTCAGCTCACCGGCTGGTCGGCCGGCGGCGGCGACCCTTGCGGCGCCGCGTGGATGGGCGTCTCCTGCGTTGGCTCCGCCGTCACCTCGATCAAGCTTTCTGGTATGGGGCTGAATGGCACTCTTGGCTACCAACTATCCAATCTGCTAGCATTGAAGACAATGGACTTGAGTAGCAACAACTTGCATGATTCAATTCCTTATCAGCTGCCACCAAATCTCGCCTATCTGAATTTGGCAGGAAATAACTTTTCCGGTAACCTTCCATACTCGATATCCAACATGGTTTCACTCAACTATCTCAATCTCAGCCACAACTTACTATTTCAGGAAATTGGTGAAATGTTTGGAAACCTCACTGCACTTTCTGAACTAGATGTATCTTTCAATAACCTGAATGGCAACTTGCCTATTTCTTTACGCTCTCTGTCAAATATTTCTGGCATTTATCTGCAAAATAACCAACTATCGGGCACAGTCAATGTACTCAGCAACCTAAGCCTTACTACACTAAACATAGCAAATAACAATTTCAGCGGTTCAATACCACAAGATTTCAGTTCAATTTCACATTTGATACTTGGAGGAAACTCATTTCTCAATGTACCTTCATCTCCGCCATCTACTATCACTTCACCACCTCAGGGTCAACCAGACTTTCCTCAAGGACCAACAACTGCTCCAAATATCCCTGAGATTCCTATTGATCAAGGTAGTGACAAGAAGCAACGTCTGCGAACTGGTCTGGTTATAGGGATAGTTATTGGCTCAATGGCTGCTGCTTGTGGTGTACTTTTCGCGTTGGTACTGTGCCTTCACAATGTCCGGAAAAGTAAAGATGGTGGGATCAGTGAATCAAAAGACGTCGCAAGCACTTTTGCAGTAAACATAGATAGAGCTTCTAACAGGGAAATATGGGATCACACCCAGCAAGACGCACCTGTTTCAAGTTCCGTGCTCCCGCCTATGGGAAAAATGACTCCTGAAAGGGTATATAGTACAAACAGCTCTATGTCAAAGAAGATGAAGGTCTCTGTCACAGCGAATCCATATACAGTTGCTTCTCTCCAAGTTGCTACAAACAGCTTCTGCCAAGATTCGCTCCTAGGTGAGGGTTCACTTGGTCGTGTTTACAAGGCCGACTTCCCCAATGGAAAGGTACTTGCAGTGAAGAAGATAGACAGTGCGTCACTTTCCTTGTATGAAGAAGATAACTTTCTTGAGGTTGTGTCGAGCATTTCACGACTTAGGCACCCAAACATTGTGCCGCTTGCAGGCTATTGTGTTGAACATGGACAAAGGCTTCTTGTGTATGAGCACATTGGAAATGGGACACTGCATGATATATTGCATTTTTTCGATGATACAAGCAAGATCCTTACATGGAACCACCGCATGAGGATAGCACTAGGCACCGCACGAGCTTTAGAATACCTGCATGAGGTGTGCTTGCCCCCTGTTGTACATAGAAACTTAAAGTCAGCGAATATCCTGCTTGATAAAGAATACAGTCCCCATCTGTCTGACTGTGGGCTTGCTGCCCTGACACCAAATCCTGAGAGAGAGGTTTCAACTGAAGTGTTTGGATCTTTTGGATATAGCGCCCCAGAGTTTGCCATGTCAGGAATATATACTGTAAAAAGTGACGTGTACAGTTTTGGAGTAGTGATGTTAGAACTATTGACAGCACGTAAACCGTTAGACAGCTCTAGAGAGAGGTCCGAACAGTCTCTTGTCACATGGGCTACTCCACAGCTTCATGACATCGATGCGCTTGCCAAGATGGTTGATCCAGCAATGGATGGGATGTACCCTGCAAAATCACTCTCCCGTTTCGCTGACATAATTGCATTGTGTGTCCAGCCCGAACCGGAGTTCCGTCCACCAATGTCCGAGGTTGTCCAGCAACTGGTGCGCCTGGTGCAGAGGGCAAGCATGGTGAGGCGTCAATCAGGAGAGGATGTGGGGCTTTCATACAGGGGCCCTGACCGCGAGGGAGGCACAGCCGACGCCATCTGA</cdnaseq>

Protein Sequence

<aaseq>MAAAALAGVLLLALAAVAGADTDGGDAAALGNLYSSWNSPAQLTGWSAGGGDPCGAAWMGVSCVGSAVTSIKLSGMGLNGTLGYQLSNLLALKTMDLSSNNLHDSIPYQLPPNLAYLNLAGNNFSGNLPYSISNMVSLNYLNLSHNLLFQEIGEMFGNLTALSELDVSFNNLNGNLPISLRSLSNISGIYLQNNQLSGTVNVLSNLSLTTLNIANNNFSGSIPQDFSSISHLILGGNSFLNVPSSPPSTITSPPQGQPDFPQGPTTAPNIPEIPIDQGSDKKQRLRTGLVIGIVIGSMAAACGVLFALVLCLHNVRKSKDGGISESKDVASTFAVNIDRASNREIWDHTQQDAPVSSSVLPPMGKMTPERVYSTNSSMSKKMKVSVTANPYTVASLQVATNSFCQDSLLGEGSLGRVYKADFPNGKVLAVKKIDSASLSLYEEDNFLEVVSSISRLRHPNIVPLAGYCVEHGQRLLVYEHIGNGTLHDILHFFDDTSKILTWNHRMRIALGTARALEYLHEVCLPPVVHRNLKSANILLDKEYSPHLSDCGLAALTPNPEREVSTEVFGSFGYSAPEFAMSGIYTVKSDVYSFGVVMLELLTARKPLDSSRERSEQSLVTWATPQLHDIDALAKMVDPAMDGMYPAKSLSRFADIIALCVQPEPEFRPPMSEVVQQLVRLVQRASMVRRQSGEDVGLSYRGPDREGGTADAI</aaseq>

Gene Sequence

<dnaseqindica>1..79#187..319#1096..1167#1246..1311#1388..1459#1555..1626#1725..1796#1883..1948#2042..2107#2200..2519#3167..3426#3572..3843#3940..4075#4179..4318#4427..4583#4819..4974#ATGGCGGCCGCCGCTTTGGCCGGCGTTCTCCTCCTCGCCCTCGCGGCGGTGGCGGGAGCCGACACCGACGGCGGCGACGGTAATATCAATTGCCGCATTCACCCCAAGTTCTTGGTTTCTTGGAATGCGTGCGTACTGTTTGATGATATGTCTGCACGGATGATCAGTTGCTTTTGGTTCTTGCAGCCGCGGCGCTGGGGAATCTGTACTCCTCCTGGAATAGCCCGGCTCAGCTCACCGGCTGGTCGGCCGGCGGCGGCGACCCTTGCGGCGCCGCGTGGATGGGCGTCTCCTGCGTTGGCTCCGCCGTCACCTCGATGTAAATAAAAGATCCTCTGATTAAACTCCCCCCAAAATGTTTTTGAGTGATGAAAAGATTTCGCGTTTGATGCCTTTCATGTTCGTGGAAAGCAGGAGTCATTTTGCTGGTTTTCTTTTCACTGCATTTCGTAAAAAAAGATTGCCGTGGCTTTGTCTTGACGTGTGGGCATTGAAAGCCGCTGATGAAATCCTGAAGTGTGTTGGTTTTTCACATTCTCTATCTTTCAGTAAATTTCTGATAGATAATTGGAAATTCTCATCCTTTGCAGTAGTTGATTGATTCTACTATCATGAGATAAAACGTTGTCCAAAAAATTTTCATTGGATGCCTATGATATTAAGAGATAGAAAGTTTTTTTTTCCTCCCTGCATGATGTCAAGTGGTGTTAATATAATTCTACTCTACTCTCTGCATCGATTAATTTGCCAGCTCAGAGTTTGGGAGACTGGATCCAGCCATCCAGGCAAATAATGGTGCTCTGCTGGTTTTCAGTGTCTTTTTCAGTTGTAGGAAAAAGGGCTTTTTCGTATGCATAAAAAAATATTTGATATTTTTTCTCGTTCAAAATCTGATGTCTGGGTAACATGCAACAAGCAGAATATATCTATTCTGGCTAAAATATAGATTATACAAAAGAGGCTGGAGAGTGTATCTTATCTTTAAGACCATACCTTAATTTTGCTATTTTCCTCTCTTTTTTTTTTTGTATATGAAATCGCCTCAAATGGAGATGCTCGATGCTGAACCATTCTGTTTGTTCCCTTGTTCTGCAGCAAGCTTTCTGGTATGGGGCTGAATGGCACTCTTGGCTACCAACTATCCAATCTGCTAGCATTGAAGACAATGTATGAGCTACTACTTGAGCACAAGTATTTATTGTCTTGTTTTCCCCTAATTTATGTCCTTCATTTCTTAACTTACAGGGACTTGAGTAGCAACAACTTGCATGATTCAATTCCTTATCAGCTGCCACCAAATCTCGCCTATCTGTAATGCTTCCTGGCTTGCACAAGTTTATTCAAGTAGTTTTTGATGCCTGCATCTTCAATAACAGTTGCGATGCAGGAATTTGGCAGGAAATAACTTTTCCGGTAACCTTCCATACTCGATATCCAACATGGTTTCACTCAACTATCTGTAAGTGCTGGCCATTGCAAATGTGCAATTCATTAGGTGGAGATTGTTATTTTGGTTGACATAGTCTAACTGTAAAAAAACACATCTACATGCAGCAATCTCAGCCACAACTTACTATTTCAGGAAATTGGTGAAATGTTTGGAAACCTCACTGCACTTTCTGAACTGTAAGTCCTACAGGACATTTCTTTGCAAGGCTTGTTATCTCAATTGTTGAAACTCTTGGTTTCATGACATGATCTTGTACAATTTGAAATCTTTACAGAGATGTATCTTTCAATAACCTGAATGGCAACTTGCCTATTTCTTTACGCTCTCTGTCAAATATTTCTGGCATGTAAGTTCTTACTAATCCTCAGTTCAAACTTCCAAATTTCGTATTTCATTTCATGGTTCTGATAGTTCTTTTGACCCATTGTCTAGTTATCTGCAAAATAACCAACTATCGGGCACAGTCAATGTACTCAGCAACCTAAGCCTTACTACACTGTGAGTGATTTTGTACAGGCTGACACGATTTCTATCCTAATCTTCCTCTCATGCTTTTCGCCTAATTATGTGAGCTATTGTGCCTTTGAACAGAAACATAGCAAATAACAATTTCAGCGGTTCAATACCACAAGATTTCAGTTCAATTTCACATTTGATGTACGCACCAACAACCAACATGTTTTAATGTTCTTTTCTATGAAAACCATCAAATTTTGCATGCTGATGGGATAATGCATTTTCAAAAATAGACTTGGAGGAAACTCATTTCTCAATGTACCTTCATCTCCGCCATCTACTATCACTTCACCACCTCAGGGTCAACCAGACTTTCCTCAAGGACCAACAACTGCTCCAAATATCCCTGAGATTCCTATTGATCAAGGTAGTGACAAGAAGCAACGTCTGCGAACTGGTCTGGTTATAGGGATAGTTATTGGCTCAATGGCTGCTGCTTGTGGTGTACTTTTCGCGTTGGTACTGTGCCTTCACAATGTCCGGAAAAGTAAAGATGGTGGGATCAGTGAATCAAAAGACGTCGCAAGCACTTTTGCAGTAAACATAGATAGAGGTATTCTCCTATATATTTGTGCACAATATTTTCATTTTATCATACTATTAATATTTGTTATTTGTGGCTCAGATTTTTTTCCCCATATAAGAATAGTAATAGTTCTTGTGGCTGGTGATAATCGTGAAATTTAGGCCACTGTCTGACATCTGACTAAGACCAGATGGCATGAGCAGGCATTACGAAAAAATATGTGAGTGAGATACTAATATCATTTTTTCTCCAAATCTGATAAAATATAAATAGAAAAGAAACAAAGACTTGTTTGAGATAAACATTTTATTCTGCCAGATATCTCAAACATGGTGTTTGCTTTGTTGATGACTAGCTTTTTGGCATTCTTCTTCCTTTATTGATGTGCTCTTTGCACCTGCATTATAGCTATTAGGTGCTTGGGTATGCTTGGGAGATGGGAATAATAAACTTTGTACCTTACTTTGTGGCTGTTTCTGCTTATTTTATTGGCAGTGCTCCTGCCATTTTGAGAAAAAGGCAAAGTGTAACATTACTTTGTGGTTTGCTGTTACCAATATATAATAAAAAATGAAACTTAAAGAACTGCAGAAGGCCCTGATGTTCAATTGTTCATTCCCCAAAGTTGAAAATAAATCAATATTACCTACATCTTTGGTGCTTTTCTTTTGCAGCTTCTAACAGGGAAATATGGGATCACACCCAGCAAGACGCACCTGTTTCAAGTTCCGTGCTCCCGCCTATGGGAAAAATGACTCCTGAAAGGGTATATAGTACAAACAGCTCTATGTCAAAGAAGATGAAGGTCTCTGTCACAGCGAATCCATATACAGTTGCTTCTCTCCAAGTTGCTACAAACAGCTTCTGCCAAGATTCGCTCCTAGGTGAGGGTTCACTTGGTCGTGTTTACAAGGCCGACTTCCCCAATGGAAAGGTAAAACATCACTTGCAGTAATCTATTGTTGGTCAATACAGAAATATTACTTTGAACTTAGCATGGTATTGCCTTATATATGTTCAACAAGTGTTTATTTGCATAGCTATGACGCAGTGGAACTGAATTCTGTGCTTGATCGCAGGTACTTGCAGTGAAGAAGATAGACAGTGCGTCACTTTCCTTGTATGAAGAAGATAACTTTCTTGAGGTTGTGTCGAGCATTTCACGACTTAGGCACCCAAACATTGTGCCGCTTGCAGGCTATTGTGTTGAACATGGACAAAGGCTTCTTGTGTATGAGCACATTGGAAATGGGACACTGCATGATATATTGCATTTTTTCGATGATACAAGCAAGATCCTTACATGGAACCACCGCATGAGGATAGCACTAGGCACCGCACGAGCTTTAGAGTATGTTATTATTTGAGCACTCTAGTGTTTTTCACTCTATGAAAAGGTTATGTTAATCAAGTATAATGCTACAATGCAATGCCAACCTTTCTTCAGATACCTGCATGAGGTGTGCTTGCCCCCTGTTGTACATAGAAACTTAAAGTCAGCGAATATCCTGCTTGATAAAGAATACAGTCCCCATCTGTCTGACTGTGGGCTTGCTGCCCTGACACCAAATCCTGAGAGAGAGGTAAGTAATGTAGTACCACATCTCTATCAATGTAGTTATTTCCAACATTTCATCTTTAGGTCCTACAGTAGTTCTTTGGGCTAAACCATGTGTTATGATGCAGGTTTCAACTGAAGTGTTTGGATCTTTTGGATATAGCGCCCCAGAGTTTGCCATGTCAGGAATATATACTGTAAAAAGTGACGTGTACAGTTTTGGAGTAGTGATGTTAGAACTATTGACAGCACGTAAACCGTTAGACAGGTACATTACCTTATTATTTCAGAGCTAGTAAGTAGTAAGAAAATGAGTAATGTATTTCTTTATTAGTAACTTCAAGGCCGTCATTCATTCTTGTGTTGCAATGTGCAGCTCTAGAGAGAGGTCCGAACAGTCTCTTGTCACATGGGCTACTCCACAGCTTCATGACATCGATGCGCTTGCCAAGATGGTTGATCCAGCAATGGATGGGATGTACCCTGCAAAATCACTCTCCCGTTTCGCTGACATAATTGCATTGTGTGTCCAGGTAATATTCGTAATCTTTCGCACATTTCTTTGTCCTGCATATGACTACCCATTTCTTGTTCGCCCAAAATTGTTCTTACAGCTTCTAATATGAACAACTCACTGAGCAGACGGTTCAGTTCTATCAATCTTAAAGTTGGTTTTGGATAACATATGAACTAGAAATACTCTTCAGAAGCACGCTAAGATCGATCATCATTTTCAGTTTGTACCATAATGCTGTCAATGCTTTGTAGCCCGAACCGGAGTTCCGTCCACCAATGTCCGAGGTTGTCCAGCAACTGGTGCGCCTGGTGCAGAGGGCAAGCATGGTGAGGCGTCAATCAGGAGAGGATGTGGGGCTTTCATACAGGGGCCCTGACCGCGAGGGAGGCACAGCCGACGCCATCTGA</dnaseqindica>

External Link(s)

EnsemblPlants:BGIOSGA020825