BGIOSGA020871

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Revision as of 12:53, 26 June 2012 by 127.0.0.1 (talk) (Created page with "{{IndicaGene| GeneName = BGIOSGA020871| Description = BGIOSGA020871| Definition = Oryza sativa Indica Group BGIOSGA020871, complete gene.| tag = | tid = BGIOSGA020871-TA|...")
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Gene Name

BGIOSGA020871

Description

BGIOSGA020871

Definition

Oryza sativa Indica Group BGIOSGA020871, complete gene.

LocusTag

'

Ensembl Transcript ID

BGIOSGA020871-TA

Ensembl Protein ID

BGIOSGA020871-PA

Length

4177

Source

Oryza sativa Indica Group 

 ORGANISM  Oryza sativa Indica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 6

Location

Chromosome 6:26081394..26085570

Sequence Coding Region

26084681..26085570,26084154..26084201,26083757..26083805,26083191..26083615,26082753..26083053
,26081560..26082391,26081394..26081425

Genome Context

<gbrowseImage1> name=IndicaChromosome06:26081394..26085570 source=RiceIndica06 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=IndicaChromosome06:26081394..26085570 source=RiceIndica06 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>ATGGCTGAGTTTTCAGCAATGAGTTCTGTAGGATGGATTGTTTCACCTATCATTCGTAAAATGGTTTCTGTGGTGCGGTCCTATATATCAAGCCAGTTCACCTGGAAGTCTGAGATGATGTCTGATCTCAAGAATTTGGAGTCCACTTTGGTACAGATTTTGTTGGTGGTTGGTGCAGCGGAAAGACGAAGTAGAAAAGACAGTAGTCAAGTGATGTCATTGCACCAAATGAAAGATGCAGTCTGTGAAGCTGATGATGTCTTGGATGAGTTTGACTATCTGATCAAAGAAAAGATTGAAGACCTAGGCATGTTCTCATCTGTTCTCTCTATTGGCAAGCGTTTAGTTAGCATTGATAAGCTCAGATCAAAATTACAAGAAGTTATAAAAACACTGGGCAGAGTTAGAGCTTCCGCAGAGATGTTTGCTCAAGTTATGGCAGGGGAGGTCTCTAGCTTCAGTCAGTCTCCTGAGTATGATCCAGCAAGAGCCACAGGATCTCCTTTGCATGAAGATACAATTTTTGGACGGAAGAATGAGATTGATGAACTAGTAAGCATATTGGTGAAGGATTGTGATGAACATTTGTCTTATGATTTTCAGTCATTTAATACAGTGTTGCATTCTATTGTTGGTGTTGGGGGCATCGGCAAGACTACACTAGCACAAGCTATTTACAATGATGAGCGGATTACAGAGATTTTTGATCTGAAGATATGGGTTTGTGTCTCCCATAATTTTGACAAAACTAGGCTAACTAAGGAGATCATAGCATGCACAGCTGGCACAGAACATATTGAATTGGCCAGTTTCAATTTCAGTATGCTCCAAGAAAAGCTTCGAGATAGACTGGAGTGCAAAAGGTTTCTTCTAGTGCTGGATGATGTGTGTTTATTCCCTAAAGGTTACCGCATTGATCCAAACAGGCTGATCCGTATCCTGACTCATGATATATTTGCCAAGCTGAAGGGGGTGCGGGTGCTGGATTATCATTCATGTTATTCCTCTGGAAAATTTAGCTCACATTGTTCCTCTCACAAACTTTTGAATCTTTCATGGGGGCAAGTGAACATAGCTGGAGGTTGTTTCAGTCTTCCTGAAAGCATTAACAGACTCGGTAACTTGGTGCATGTTGATATAGAGAAGTCATATGCTCTCATGCTAACGGGCATGCATCAACTTCCATGTGTTGAAGGTTCAGGAGAATTTCATGTTGGCAAGAAGGGGCAAAGTATTGTTGGGCTGAAGGATCTGAATGAACTTCGTGGAGAGCTTGCAATTAGATTGCTGGAGAATGTGAAAACCAAAGAGGAAGCTGCTAAGGCCATCTNTGACCTAAAGAAGCACATAAGAAAGCTGGAGCTAGATGGGGATCGGCTGACCATGATGATCACACTAGCAATAGTTGTGATATGGGAGGTACTTCCACCTTTAGGGGATCTACCATTGCTTAAGTCTCTTGAAGTTCGGAGAATGGATGAACTGAAAATACTAAATCAGGAGTTGTTGGGCCGTAAAGGATTCCCCTCATTGGAGAGACTGCTGCTGGAACGCTTGCCCAAACTAGAATGGAGTATTGTAGAGAACGACCAGTTGTTTCCTGCTCTGAGAGATCTCTCAATTTCTGAATGCCCAAGGTTAAAAGAATACCCGATCTATCTGCCTACACTCAGACATATTGCTATACTGGATGAGGAACAAATTCACTTCAAGGCAGCCTTCAATAATATGAAGCAACTCAAAGAGCTCACAATGTTTGACTTAGGATCATCTTGGGAGAATACATACCCAATAATTAGCACATTGTGGGATGAAGATGGAGTTACTGTGCTTCCTACAACACTTCAACGTCTTGAGCTAAGTTGTCACCTACAAGTGAGTTCTTTATCCAAGTTGCTGAATAACTTCATATGCCTTGATATACTAGACCTAGCGAATTGTGATACAATCGGAATGCCGTCTCAATTATCACTAAGTGTGCACCAGTTGAGGATGCTCAGGCGATTATATGTATACGGCTGTACCTGGTTAATTTCACTCGAGGGATCTGAATCATTTGTCTCCCTCAAAGAGCTGACATTGGAGAAGTGTGATTATTTGGAATGCATACCAGACATGGAGAACATGCCATCCCTCCAAAAATTATTTCTACCGCGTTGCCCTCTAGTGAAGCGACTATGTCAATCTGGCTGCCACACAGCATTGAAGGAACTGGGCGTGAGATACTGTGATGGGCTAGAAACACTGAAAGATTTGCACGACCTTGTTTCCCTTAGAAAGATGGAGATTAGCGAATGCTCGGCTCTCATATCACTTCCTGATATGGGCACCTTTTATTCTCTAAAGATTCTGGTCATTGATCGATGCACTCAACTTAGGGTATTGCCGAGGAGTGGTCTCCTTGTATCACTGGAAGTTATCTTCCTGATAGAAGGCCATCCATTATTAGACAAGCAGTTTGAACACAAAAATGGTCCTGACTACAACAAGGTTGCAGCCCTTTCAGGATGCATATGTCATACAAAGCGATATTTAGAGTATGAATGGGAACTATATGAGTACTGGAATAAATTCTGA</cdnaseq>

Protein Sequence

<aaseq>MAEFSAMSSVGWIVSPIIRKMVSVVRSYISSQFTWKSEMMSDLKNLESTLVQILLVVGAAERRSRKDSSQVMSLHQMKDAVCEADDVLDEFDYLIKEKIEDLGMFSSVLSIGKRLVSIDKLRSKLQEVIKTLGRVRASAEMFAQVMAGEVSSFSQSPEYDPARATGSPLHEDTIFGRKNEIDELVSILVKDCDEHLSYDFQSFNTVLHSIVGVGGIGKTTLAQAIYNDERITEIFDLKIWVCVSHNFDKTRLTKEIIACTAGTEHIELASFNFSMLQEKLRDRLECKRFLLVLDDVCLFPKGYRIDPNRLIRILTHDIFAKLKGVRVLDYHSCYSSGKFSSHCSSHKLLNLSWGQVNIAGGCFSLPESINRLGNLVHVDIEKSYALMLTGMHQLPCVEGSGEFHVGKKGQSIVGLKDLNELRGELAIRLLENVKTKEEAAKAIXDLKKHIRKLELDGDRLTMMITLAIVVIWEVLPPLGDLPLLKSLEVRRMDELKILNQELLGRKGFPSLERLLLERLPKLEWSIVENDQLFPALRDLSISECPRLKEYPIYLPTLRHIAILDEEQIHFKAAFNNMKQLKELTMFDLGSSWENTYPIISTLWDEDGVTVLPTTLQRLELSCHLQVSSLSKLLNNFICLDILDLANCDTIGMPSQLSLSVHQLRMLRRLYVYGCTWLISLEGSESFVSLKELTLEKCDYLECIPDMENMPSLQKLFLPRCPLVKRLCQSGCHTALKELGVRYCDGLETLKDLHDLVSLRKMEISECSALISLPDMGTFYSLKILVIDRCTQLRVLPRSGLLVSLEVIFLIEGHPLLDKQFEHKNGPDYNKVAALSGCICHTKRYLEYEWELYEYWNKF</aaseq>

Gene Sequence

<dnaseqindica>1..890#1370..1417#1766..1814#1956..2380#2518..2818#3180..4011#4146..4177#ATGGCTGAGTTTTCAGCAATGAGTTCTGTAGGATGGATTGTTTCACCTATCATTCGTAAAATGGTTTCTGTGGTGCGGTCCTATATATCAAGCCAGTTCACCTGGAAGTCTGAGATGATGTCTGATCTCAAGAATTTGGAGTCCACTTTGGTACAGATTTTGTTGGTGGTTGGTGCAGCGGAAAGACGAAGTAGAAAAGACAGTAGTCAAGTGATGTCATTGCACCAAATGAAAGATGCAGTCTGTGAAGCTGATGATGTCTTGGATGAGTTTGACTATCTGATCAAAGAAAAGATTGAAGACCTAGGCATGTTCTCATCTGTTCTCTCTATTGGCAAGCGTTTAGTTAGCATTGATAAGCTCAGATCAAAATTACAAGAAGTTATAAAAACACTGGGCAGAGTTAGAGCTTCCGCAGAGATGTTTGCTCAAGTTATGGCAGGGGAGGTCTCTAGCTTCAGTCAGTCTCCTGAGTATGATCCAGCAAGAGCCACAGGATCTCCTTTGCATGAAGATACAATTTTTGGACGGAAGAATGAGATTGATGAACTAGTAAGCATATTGGTGAAGGATTGTGATGAACATTTGTCTTATGATTTTCAGTCATTTAATACAGTGTTGCATTCTATTGTTGGTGTTGGGGGCATCGGCAAGACTACACTAGCACAAGCTATTTACAATGATGAGCGGATTACAGAGATTTTTGATCTGAAGATATGGGTTTGTGTCTCCCATAATTTTGACAAAACTAGGCTAACTAAGGAGATCATAGCATGCACAGCTGGCACAGAACATATTGAATTGGCCAGTTTCAATTTCAGTATGCTCCAAGAAAAGCTTCGAGATAGACTGGAGTGCAAAAGGTTTCTTCTAGTGCTGGATGATGTGTGGTATGATGAAAGAGTTGGAGAGCACATGAACAGAGAAATGTGGAAGGAGTTGATAGCTCCCATAAGAAATATACATATAAGTTCTGAGGCTTTACAGAGAAAGAGGACAGGAAGCAAAAATACTAGTGACAACCCGTGCAGAATTGGTAGCAAAAATGCTAGATTCAAGAAGCTTATTTTTCTTGCAGGGACTTGGAAAAGATGACAGCAGAATGCTCTTCCGGAAATGTGCATTTGGAAACAGGAATCAGAAGATTACCCAGAGTTGAAGATAATTGAGGACCAAATGTTGAAAACCTAAAAGGCTCAGCTCTAGCCATTAAGGTGACTGGAGCCCATTTAAGTGCCAAATACAACGCTCTGGAATGGAACAAAATTCTTCAGAAAAGTGTACTCAACCCTAATGACATTGTGACAATCTTACGCTCAAGTTATGAAAGCTTACCAAATCATCTTCAGCTGTGTTTTACGTACTGCAGTTTATTCCCTAAAGGTTACCGCATTGATCCAAACAGGCTGATCCGTATGTGGGTAGCTCAGGGTTTTGTTCATTCAGACGGAAATATCAATACTAGTCTGGAGGATATTGGCAGAGGCTATTTCAATGATTTGCTACAACGCTCATTTTTCCAAGTGTTCCGATGTGGAGACCAAATTTACTATATTATGCATGATGTATTGAATGATCTGGCACTTCATGTTTCTGGGGGTGAATGCCATAGGATTGAACATGGCAGTCTGAGTGAGTTACCCCATCATATTAGGCATTTGTCTGTTTCTGCTGAACTCCTGGAAAATTTTGTGAGTTTTGGTAGTTTGGGAAGATTGCGTTCACTAATAGTTTTTAACAAGTTTTTGTTTTGCTCAAAACTCAGCCTGACTCATGATATATTTGCCAAGCTGAAGGGGGTGCGGGTGCTGGATGTAAGTGGCTGTTGCATGAAACGCTTGCCTGATGCTGTGTACAATCTCATTCACCTCCGTTTCCTAGCTATACAGTGGACATGTTACACACTACCTAAAACAATTTCTAGACTTCATCATCTAAGGGCCTTGTTTGTACAGTATCATTCATGTTATTCCTCTGGAAAATTTAGCTCACATTGTTCCTCTCACAAACTTTTGAATCTTTCATGGGGGCAAGTGAACATAGCTGGAGGTTGTTTCAGTCTTCCTGAAAGCATTAACAGACTCGGTAACTTGGTGCATGTTGATATAGAGAAGTCATATGCTCTCATGCTAACGGGCATGCATCAACTTCCATGTGTTGAAGGTTCAGGAGAATTTCATGTTGGCAAGAAGGGGCAAAGTATTGTTGGGCTGAAGGATCTGAATGAACTTCGTGGAGAGCTTGCAATTAGATTGCTGGAGAATGTGAAAACCAAAGAGGAAGCTGCTAAGGCCATCTNTGACCTAAAGAAGCACATAAGAAAGCTGGAGCTAGATGGGGATCGGCTGACCATGATGATCACACTAGCAATAGTTGTGATGTGCTTAATGTGCTAAAGCCTCACCCTAATCTTGTCGAGCTAACTATAAGTGGATATCCAGGTGCTACTTCTCCCACTTGGCTGAATTCTGGTTGGCTGAGTAGTTTGCAATTGATTTGCTTACGTGATTGTAAAAGATGGGAGGTACTTCCACCTTTAGGGGATCTACCATTGCTTAAGTCTCTTGAAGTTCGGAGAATGGATGAACTGAAAATACTAAATCAGGAGTTGTTGGGCCGTAAAGGATTCCCCTCATTGGAGAGACTGCTGCTGGAACGCTTGCCCAAACTAGAATGGAGTATTGTAGAGAACGACCAGTTGTTTCCTGCTCTGAGAGATCTCTCAATTTCTGAATGCCCAAGGTTAAAAGAATACCCGATCTATCTGCCTACACTCAGACATATTGCTATACTGGATGAGGAACAAATTCACTTCAAGGTTTTTATTGACAACTTTGAACTAACAAGATCATTTTGCTGCCTGTTGTCAAGCTTCTTCCATGTCTTGCGTGCTCATCACCTAGAGTTTGTTGAAAAACTGAAGATTTGCGTAGATCATTTGAGAGACATTCCTAAGGCAGCCTTCAAACCGGGATGTTTTTACCCAGGAGCATGGGTGGCGATCTAGTCTACGGATTGATAGTCACTAATATCTATGTTTCGTGATGGGGGTTTAGTTTTGTCCTTTTATTGGCTGTGTGCATCTTTATGCAGAGGCCGGGGGTGGGCTCAGTTGGATTGTATCATCTTGATGTATTTGACTGAGTCTTAATAAAGCTTCCATTATCTTAAAAAAAAAGGCAGCCTTCAATAATATGAAGCAACTCAAAGAGCTCACAATGTTTGACTTAGGATCATCTTGGGAGAATACATACCCAATAATTAGCACATTGTGGGATGAAGATGGAGTTACTGTGCTTCCTACAACACTTCAACGTCTTGAGCTAAGTTGTCACCTACAAGTGAGTTCTTTATCCAAGTTGCTGAATAACTTCATATGCCTTGATATACTAGACCTAGCGAATTGTGATACAATCGGAATGCCGTCTCAATTATCACTAAGTGTGCACCAGTTGAGGATGCTCAGGCGATTATATGTATACGGCTGTACCTGGTTAATTTCACTCGAGGGATCTGAATCATTTGTCTCCCTCAAAGAGCTGACATTGGAGAAGTGTGATTATTTGGAATGCATACCAGACATGGAGAACATGCCATCCCTCCAAAAATTATTTCTACCGCGTTGCCCTCTAGTGAAGCGACTATGTCAATCTGGCTGCCACACAGCATTGAAGGAACTGGGCGTGAGATACTGTGATGGGCTAGAAACACTGAAAGATTTGCACGACCTTGTTTCCCTTAGAAAGATGGAGATTAGCGAATGCTCGGCTCTCATATCACTTCCTGATATGGGCACCTTTTATTCTCTAAAGATTCTGGTCATTGATCGATGCACTCAACTTAGGGTATTGCCGAGGAGTGGTCTCCTTGTATCACTGGAAGTTATCTTCCTGATAGAAGGCCATCCATTATTAGACAAGCAGTTTGAACACAAAAATGGTCCTGACTACAACAAGGTTGCAGCCCTTTCAGGATGCATATGTCATACAAAGCGATATTTAGAGTATGAATGTAAGTATACTTTCTGTTCACTGTTCTGAATTTATTATTGGAAAATTGAAACATATAATTCATCTGTTGTGAAAATGTCAAATTTCTTGTTGATATAGATGGATTTAATTGTAGTATGATGCCATTTCTTGCAGGGGAACTATATGAGTACTGGAATAAATTCTGA</dnaseqindica>

External Link(s)

EnsemblPlants:BGIOSGA020871

Retrieved from "https://ngdc.cncb.ac.cn/ricewiki/index.php?title=BGIOSGA020871&oldid=43396"