Os11g0572400

From RiceWiki
Revision as of 09:14, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os11g0572400| Description = Similar to ST3GAL-I sialyltransferase (Fragment)| Version = NM_001074657.1 GI:115485962 GeneID:4350756| Length = 393...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os11g0572400

Description

Similar to ST3GAL-I sialyltransferase (Fragment)

Version

NM_001074657.1 GI:115485962 GeneID:4350756

Length

3934 bp

Definition

Oryza sativa Japonica Group Os11g0572400, complete gene.

Source

Oryza sativa Japonica Group 

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 11

Location

Chromosome 11:23318248..23322181

Sequence Coding Region

23318299..23318434,23318516..23318595,23319169..23319255,23319358..23319435,23319516..23319607
,23319701..23319902,23320213..23320303,23320732..23320790,23320982..23321130
,23321231..23321312,23321397..23321783

Expression

GEO Profiles:Os11g0572400

Genome Context

<gbrowseImage1> name=NC_008404:23318248..23322181 source=RiceChromosome11 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008404:23318248..23322181 source=RiceChromosome11 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcgagggcgccgccgccgctgtcgtcgttgccgccgccgccgcgccggcccacggtggtgctgcttctggggctggccctcgccttctgcctcgccgtcctctccatccagtcctcattcttcaccgctccgaggctggcgagtaggctggatctggactccgacgaggtccgcgcgctctcgggcttccagtcccgcgtccagcagtgcgtggcaagaaggggacttggcctcacagcagatattattgatcattgcaagctagtccttagatttcctaaaggaaccaacagcacttggtacaacactcagttcaaatattttgaaccactagaatacaactatgatgtctgtgaaactatccttctgtgggaacagtaccgtaacatgacgactgtgttgacaagggagtacttagatgtgcgacctgatgggtggttggattatgcagccaaaaggattgcacagctcggtgctgacaaatgctacaatcgtactttgtgcgaagagcttcttagtgttttactccctgctaagcctccttttcatcctcgccagtttgcaacatgtgctgttgttggtaactcaggggatctcttgaaaacagagtttggacaagagattgatgcacatgatgctgtgttccgagataatgaagcacctgttaataagaagtatgcaaaatatgttgggttgaaaagggactttcgactggttgtcaggggtgctgctcgaaacatggcgccaatactaaagggctcctctgatgaggttcttattataaaaagtttgacgcacaaagaaatcaatgcggtgataaaggaacttccaaacccagtttatctttttcaaggcatagtcttgagaagaggtgctaaagggactggtatgaagtcaatagaattggccctttccatgtgtgatattatcgacatgtatggattcacagttgaccctaactacacagaatggacaaggtacttctcacccccaaggaaaggacacaatccactgcaagggcgggcttattatcaacttctggagtgccttggagtaattcgaatccattcccccatgagagcaaagagggtagaagattggtcggatatacctagcagggaagagatcagaacagcgcatgctgcggcttttcgtttaaaaaggcatgaaactggtcaatctgatcaaatggggccatttagcaactgcaaggtatggggaacagttgacccagattacggacctgtatcaggaactccagacatgagcgaaacacgaaagagctcaaactacaagaagtgggaggtactcccattcgacagcttacgaatggaggctcaggaacaccatgtccagatgggcggcgtatctctgtacaagatggatggaaacaagctagatgatcttgtttgtgtgagacatgaacgttcatctagttaa</cdnaseq>

Protein Sequence

<aaseq>MARAPPPLSSLPPPPRRPTVVLLLGLALAFCLAVLSIQSSFFTA PRLASRLDLDSDEVRALSGFQSRVQQCVARRGLGLTADIIDHCKLVLRFPKGTNSTWY NTQFKYFEPLEYNYDVCETILLWEQYRNMTTVLTREYLDVRPDGWLDYAAKRIAQLGA DKCYNRTLCEELLSVLLPAKPPFHPRQFATCAVVGNSGDLLKTEFGQEIDAHDAVFRD NEAPVNKKYAKYVGLKRDFRLVVRGAARNMAPILKGSSDEVLIIKSLTHKEINAVIKE LPNPVYLFQGIVLRRGAKGTGMKSIELALSMCDIIDMYGFTVDPNYTEWTRYFSPPRK GHNPLQGRAYYQLLECLGVIRIHSPMRAKRVEDWSDIPSREEIRTAHAAAFRLKRHET GQSDQMGPFSNCKVWGTVDPDYGPVSGTPDMSETRKSSNYKKWEVLPFDSLRMEAQEH HVQMGGVSLYKMDGNKLDDLVCVRHERSSS</aaseq>

Gene Sequence

<dnaseqindica>52..187#269..348#922..1008#1111..1188#1269..1360#1454..1655#1966..2056#2485..2543#2735..2883#2984..3065#3150..3536#gtggagtgaagcggaggagaaggaagcatcgcatccgcctccgatccggcgatggcgagggcgccgccgccgctgtcgtcgttgccgccgccgccgcgccggcccacggtggtgctgcttctggggctggccctcgccttctgcctcgccgtcctctccatccagtcctcattcttcaccgctccgagtgagagcgctctcccgaaaacctagctttcgttccccttcgttgtgtgggattgatggggagggatggattctcttgcagggctggcgagtaggctggatctggactccgacgaggtccgcgcgctctcgggcttccagtcccgcgtccagcagtgcgtggtgcgtgaccccggcttgctctgtgctctcttgaattcaaataattgtcctgccatggaagccttgattgtttttaactaagcacatttctgctttgaagagatcaatttgagttcacagtaattgtggattgtgtcatagtgaagggcaggggcagtgaattagctactagtgttatactgttatggtctacccgtgtgtcgtgtccgctgaaacaaccatgaattgttcatccatgcatggtgtctttgcaatcagtcaatcgtgggatcacattattcatcaaattgctggttcttatttgttacgtttagttcttgtttgttatgcatgaatttggtcggagaaaggatgcgatttataggacaccattccataatgaacaatgaggcaatctgcaaaatggtcatctagaatctatgtgaaactcagtttcagttttagaccttctcaagtattataagttacagatttgcagcattttcctttgatcagcagtagaagtttcatttacatgttctttactctcttgcttcttttctagcttgcttctgaaatctcaactttatttaggcaagaaggggacttggcctcacagcagatattattgatcattgcaagctagtccttagatttcctaaaggaaccaacagcacttgggtaagtattccctgtcatgttcacatgcagttacttctgttaacggatttgtgtccttcaacaaaggtccactcaagatatcacttctcttgacttatgcagtacaacactcagttcaaatattttgaaccactagaatacaactatgatgtctgtgaaactatccttctgtgggaacaggttagtacatggtttatgaattatgaaatagcgtgtttattagaatatatacttatgtgttaatgctaatatgatgccagtaccgtaacatgacgactgtgttgacaagggagtacttagatgtgcgacctgatgggtggttggattatgcagccaaaaggattgcacagctgtaagtttgatacttgttgcacatttgcactattcttcgtaacgaagtgatattaatccgcatactggttaatgtgctttaaaaaatatgcagcggtgctgacaaatgctacaatcgtactttgtgcgaagagcttcttagtgttttactccctgctaagcctccttttcatcctcgccagtttgcaacatgtgctgttgttggtaactcaggggatctcttgaaaacagagtttggacaagagattgatgcacatgatgctgtgttccgagataatgaagcacctgttaataaggtaatctcattgagttcttcatatgtatctaagctaacacttcatatgtatctaagctaacttatgtgaatggcctattttagtgtgttcttgttgaccccgtaggcagctaagctcctcctgttaagttattactccattctctcttcttaatgcctaccctgaaccccttgccatcttattagcttcttgttattttaggtgtcttctatcctaactccggacatctaaaaattatattttcttctaaagttggcacagattgacactcgtttactaattttgctcttattttatctttggcctgcagaagtatgcaaaatatgttgggttgaaaagggactttcgactggttgtcaggggtgctgctcgaaacatggcgccaatactaaagggctcctgtaatgctgtaatcctggtttcttccagataacttcaatcctgatagtgttttaatttactttttcataaatgagagaaaatataatattcgtattggtgttctctattatcctcgaactattagaaagcacatggcaatgtcgttcatttctggttttcgcaacttggaagatgccttgttaagcttgcagagacaattagtattgtgcatcacttgaggactaatatattattccatacaaggacatttgtgtaataacaccagataacttttatttgtagcttaactagttcttataggaatttattatacttcacttaagttgctctcttctaataaattttagatgcatgagatcactttttatagtagtcaccactagatgagcttttaaacaggagtctaactgtcctgcttttgttgcagctgatgaggttcttattataaaaagtttgacgcacaaagaaatcaatgcggtgataaaggtaaaaggttatatgatcacatttttctttcgtccagctgagcatgttgtacaattcactatctgtctcttcttgaatcatactaatgtgaagcatgaatttcatgctgttgtgattttcttcttgttactatggtttttggggactgaaatcattcacactgaatacttggcaattgttttaactggcaggaacttccaaacccagtttatctttttcaaggcatagtcttgagaagaggtgctaaagggactggtatgaagtcaatagaattggccctttccatgtgtgatattatcgacatgtatggattcacagttgaccctaactacacagaatggtaagtcaatgcatggatgtgttatatgtagatatccatggtactattgttctctatgatttttgtgcaaggatgttttatgcccacttcattgtttcaggacaaggtacttctcacccccaaggaaaggacacaatccactgcaagggcgggcttattatcaacttctggagtgccttggagtaagcctccaggctctcgcccatgttttcgtctgatttgtctatatgaagttgtcttgtctaattgctgtttcctgtatgtaggtaattcgaatccattcccccatgagagcaaagagggtagaagattggtcggatatacctagcagggaagagatcagaacagcgcatgctgcggcttttcgtttaaaaaggcatgaaactggtcaatctgatcaaatggggccatttagcaactgcaaggtatggggaacagttgacccagattacggacctgtatcaggaactccagacatgagcgaaacacgaaagagctcaaactacaagaagtgggaggtactcccattcgacagcttacgaatggaggctcaggaacaccatgtccagatgggcggcgtatctctgtacaagatggatggaaacaagctagatgatcttgtttgtgtgagacatgaacgttcatctagttaagtcagcacttaatctttgcctggagatggcatcttgaccctgtggtaatcttcagaggcatatctacttgtcagttgtaagatcacaagaggcaaaggattgaggctattctttagggtttctcattcccctgacagaaaatattcttttattggtttcttagcgactttgtagggatatttgcttaatcagtcggaagaatgttccgctatgggtacagctgtaacgattttggtgccacttgcaacatgtactagccatcacgcaattctgaactgcagttttgttgttgagctagtaacctacaccctgaattgtagtactatagtttttgttgttgacacatgttttcatttcacaatgccatataagtgaaagtcatgtttgttttgttattg</dnaseqindica>

External Link(s)

NCBI Gene:Os11g0572400, RefSeq:Os11g0572400

Retrieved from "https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os11g0572400&oldid=4383"