Os11g0620100

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Revision as of 09:16, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os11g0620100| Description = Similar to Oligouridylate binding protein| Version = NM_001074824.1 GI:115486296 GeneID:4350940| Length = 4843 bp| ...")
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Gene Name

Os11g0620100

Description

Similar to Oligouridylate binding protein

Version

NM_001074824.1 GI:115486296 GeneID:4350940

Length

4843 bp

Definition

Oryza sativa Japonica Group Os11g0620100, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 11

Location

Chromosome 11:26013312..26018154

Sequence Coding Region

26013652..26013918,26014189..26014362,26014461..26014546,26014700..26014819,26014913..26014943
,26015032..26015107,26015247..26015334,26015452..26015513,26015616..26015692
,26016465..26016567,26016812..26016873,26017691..26017870

Expression

GEO Profiles:Os11g0620100

Genome Context

<gbrowseImage1> name=NC_008404:26013312..26018154 source=RiceChromosome11 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008404:26013312..26018154 source=RiceChromosome11 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgcagcatcagcagcggatgaagcaggcggcggcggcggcgcagcagcagcagatgatgcagcaggcgctgctcatgcagcagcagcaggctgcggcggtggcggcggcggcgcagcagcagcaggcgcccttgttccccccgcaccacccgcacccgggcctcctcgcggcgccgcagatagagcccattgttagtggcaacctgcctcctggatttgattcaagtacatgccggagtgtgtatgttggcaatatccatcttcaagtgacggattcactgctacatgaggtcttccaaagtattggtccagtagaaggatgcaagctcatcaggaaggaaaagtcatcctttggttttgttgactattatgaccgtagatctgctgcaattgcaattgtatcactcaacggtagacaattgtttggccagccaataaaagtcaattgggcatatgcaagtactcaaagagaggatacatcaggccattttaatatttttgttggcgatctttgcccggaagtaacagatgctgctttgtttgcttttttcgctggatttaccagttgctcagatgctagggtaatgtgggatcagaaaactggacgatccagaggttttggttttgtttctttcagaaatcagcaggacgcacaaaatgccataaatgaactgaatgggaagtggctcggcaaccgtcaagttcgttgcaattgggcaacaaagggtgctaatgctggtgaagagaaacaaaatacagactccaagggtatgatagagttgacaaatggttcatcagaaggtggaaaggataatgcaaatgaagatggtcctgaaaacaacccacagtacacgactgtttatgttggcaatcttcctcatgatgtcaacagcaatgatgtgcacagatttttccattcacttggggttggttcaattgaggaggtgcgtgtaacgcgtgataaaggttttggctttgtgcgttacagcacccatgaagaagctgctctagcaattcagactggtaatggacaacttattggcggtaggcagatcaagtgttcctggggaagcaagccaactccaccagggacagcatccgcgcccctaccccctccagcaccagcaccattcaatcctggcatgtcggcgaccgacctcctagcctacgagcgcaccctggcgctgagcaagatggcagcgaacccggccctgatgagtcagcacgccgccctaaagcaggctgccgccatggggatgggcgccggagccagccaggccatctacgacggcggctaccagagtgccaacgccgtcttctactag</cdnaseq>

Protein Sequence

<aaseq>MQHQQRMKQAAAAAQQQQMMQQALLMQQQQAAAVAAAAQQQQAP LFPPHHPHPGLLAAPQIEPIVSGNLPPGFDSSTCRSVYVGNIHLQVTDSLLHEVFQSI GPVEGCKLIRKEKSSFGFVDYYDRRSAAIAIVSLNGRQLFGQPIKVNWAYASTQREDT SGHFNIFVGDLCPEVTDAALFAFFAGFTSCSDARVMWDQKTGRSRGFGFVSFRNQQDA QNAINELNGKWLGNRQVRCNWATKGANAGEEKQNTDSKGMIELTNGSSEGGKDNANED GPENNPQYTTVYVGNLPHDVNSNDVHRFFHSLGVGSIEEVRVTRDKGFGFVRYSTHEE AALAIQTGNGQLIGGRQIKCSWGSKPTPPGTASAPLPPPAPAPFNPGMSATDLLAYER TLALSKMAANPALMSQHAALKQAAAMGMGAGASQAIYDGGYQSANAVFY</aaseq>

Gene Sequence

<dnaseqindica>4237..4503#3793..3966#3609..3694#3336..3455#3212..3242#3048..3123#2821..2908#2642..2703#2463..2539#1588..1690#1282..1343#285..464#actccgccatccgcctcacgccgcgcctccgccctcttcctcccccctcggcttcgagggtttttttttttcttcttcttttttctttttttcttcttctccttttttgtttctcgtttcttttttttttcggtttcgggggagttggattcttgattccttcctccccctgaggccaaaccctaataataatctgatccctgacacgagagcggaggcggaggaggaggtgggggatcgatcgatcgcgatcgatcgattgagtgattggttgattgatcgacatgcagcatcagcagcggatgaagcaggcggcggcggcggcgcagcagcagcagatgatgcagcaggcgctgctcatgcagcagcagcaggctgcggcggtggcggcggcggcgcagcagcagcaggcgcccttgttccccccgcaccacccgcacccgggcctcctcgcggcgccgcaggtggcccaatctctctccctctctctctccttccgtttcgatcagcggtcagggtttggtggatttttactgtgcggtcgagggtttcgtttttggggatttcggtagcacgattcggtaaatttcatgttgtagtgtttgaggccagtgggattgattactattgagagtgaggatttgactgtttcgcggttgggattttgtcagatactctagtttttttcttttgattttgtagtagtctctctgacttgtcgcatgtattggggaaaattatttttttcccgtagggtttgtggggatagggtttattgttcaatttgtcgtctttgggaacctgttttggttgaaatttcagatctttatgtattattagacccaacaagtacctatagtacacgaattatagttctctgtgcttgtgtttaagctttcatatttattaactttgaatttgtcagattgtactgcgaactagtataaatgagttccgttgaaggtcagtggaaactagtctggtgattgctagatcagtcgctattaaaggatgtggtttaccgtttacgtttaggctgcatctgatctttaacaaggtgtacttctttggggcaagtggtaaatggggaacatacttgaacacaccataattatgctcgaattccttttataacctggatgttatttgcatacattattgcagttacagtgacttgtatgcttttgctcctttatttcttcttctatctccttgaattattttcattataaaatatttaagtgcaccattttttttgacactaatattattttctggcagatagagcccattgttagtggcaacctgcctcctggatttgattcaagtacatgccggagtgtgtaagtatttgtcacctgttttgccctgtttatgcccaaggaactttgttactgttgtttcactgatttggttctatttcgcaacattacgaaatagttagattgggtaatgctatgcctttgggcagagtgcccttgatccactgatctggatcgagctctcttcgttatttgcagcattgcattgttggctagatattctgcattcattctttcttatggttgccattgatgttctgaataggtatgttggcaatatccatcttcaagtgacggattcactgctacatgaggtcttccaaagtattggtccagtagaaggatgcaagctcatcaggaaggaaaaggtgtggaatctttgctctttgagacaaacctaacaaaaaaaatattatctatactgttttcgctagatccttttgtatccttgtaaatgttgctagttgaaggcatttttatcgtttgggatgttctgagtattttatcgatctccatagaaaagcacatgcatacccgcccctaatcccttaattaattaactaaactgatagttactgaaatctgtcattgaatgaatttcatttttcattcgcatactgtatttttaaaacttgataataactataagacagtatgacactgcccagtaccataagcgtgatataccgatatcatcaaacaacttgtacatgatatgacttatgcaaatctgttatagtgaaccatagttcaaatgtatacaagagtttatttttcagcataatggttaacactagagctatagtgatgatgctggagtgactattttggagtattttattcagttgaatttcatagtaaggataggctagcacaaatgccgtaattctgaacaaggaagtttcaaaatgtttgctatgttattcacataggccagacagctaaattcattcaattattatgttactaactacagtattgatctctcttgagaaagcttcaatgtgatgcatcagtttgtttaagtggctaaatgttttcagcagatttaatgtaattaacttcttaggtttggctgagccgtacactttttatatacatgtgcttatatgatttccttttttgtattaaatctcgcagtcatcctttggttttgttgactattatgaccgtagatctgctgcaattgcaattgtatcactcaacggtagacaattgtaagtatttcaatactatagtattataatatatataaattctaatattttgcttttcctcttaacattttccaacattttcttatgatcctacattaccaggtttggccagccaataaaagtcaattgggcatatgcaagtactcaaagagaggatacatcaggttgggaactgaaaaactgttaaatgttcttttgcaattattgttctgtactgtctgtgtacatgtgaatctgagttattaaaattgagctttgctgatgtctgttcattcttgcaggccattttaatatttttgttggcgatctttgcccggaagtaacagatgctgctttgtttgcttttttcgctggatttaccagttgctcgtaagtgtttcacgtatctgtgtgtattttttttttccagttctcactctgctagctgcgacattttatcggaagggtattttaccagttgttcaagattatgcattttctttcttacccatatgtattttttttccagagatgctagggtaatgtgggatcagaaaactggacgatccagaggttttggttttgtttctttcagaaatcagcaggtagtgtcattgtgacagtttaatttttatttatttgtacttttttttggtgcggtgctgattgatcatctttgttattcattgacaggacgcacaaaatgccataaatgaactgaatggtgagtctttttccatgtttgttgccatgcctcactagtcattaggttagttctagctacctgatcatttctgcttacttttcattgcttcagggaagtggctcggcaaccgtcaagttcgttgcaattgggcaacaaagggtgctaatgctggtgaagagaaacaaaatacagactccaagggtatgatagagttgacaaatggttcatcaggtgaatatacatgccttttgtcctggcccacttgttttggtttaagtcaatacatgattgtaatatgtaatgtaacaatcaactgagcaagagctctgttaaatggctagaaagtactgaactgtaaagtattccatgttcttttttatgcagaaggtggaaaggataatgcaaatgaagatggtcctgaaaacaacccacagtacacgactgtttatgttggcaatcttcctcatgatgtaacctctcccatttctgaaacaaatttctttttgttttgtgctgtattttgttgtttttccataccagtaacgtttctgcctcttatatttactaggtcaacagcaatgatgtgcacagatttttccattcacttggggttggttcaattgaggaggtgcgtgtaacgcgtgataaaggttttggctttgtgcgttacagcacccatgaagaagctgctctagcaattcagactggtaatggacaacttattggcggtaggcagatcaaggtacgttcatcttcaatgtttcagccataaatacatttaatataagagtgttttgggtagatcaatcataaggatggtttgccatgcccatgcttattagagagcataccagaaatacttgcaaaacatcaataattggaacattctgaatttcattggcatttacctccgcaagttatgttttcaccgagtttttatcgtaaggagaggatgtagtctagttatggttcttgcaattcagctaaactttaatcttgttcctacttgcagtgttcctggggaagcaagccaactccaccagggacagcatccgcgcccctaccccctccagcaccagcaccattcaatcctggcatgtcggcgaccgacctcctagcctacgagcgcaccctggcgctgagcaagatggcagcgaacccggccctgatgagtcagcacgccgccctaaagcaggctgccgccatggggatgggcgccggagccagccaggccatctacgacggcggctaccagagtgccaacgccgtcttctactagagtgacctgagtacctgaccccccatgaagcagaccaccaccattgcctgcctgcctctgtatgaccaaggaggatgatgatgacccctccacccccttatacatatagtagatgaagccttacctgaacctctccttttctacctttgttatttgccaatctagtaatcttctcttcgctggatgctggctatatatatatatctagaacatatatataatgtttttctgcatttttagagatatggaaacgacctttggtatttggatggttccctctgttactatcatcgtatcatgtcggtgtcatattgtattgctctatgcgcatttttttttt</dnaseqindica>

External Link(s)

NCBI Gene:Os11g0620100, RefSeq:Os11g0620100