BGIOSGA017640

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Revision as of 02:22, 27 June 2012 by 127.0.0.1 (talk) (Created page with "{{IndicaGene| GeneName = BGIOSGA017640| Description = cDNA clone:J023112L03, full insert sequence| Definition = Oryza sativa Indica Group BGIOSGA017640, complete gene.| ta...")
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Gene Name

BGIOSGA017640

Description

cDNA clone:J023112L03, full insert sequence

Definition

Oryza sativa Indica Group BGIOSGA017640, complete gene.

LocusTag

OJ1362_G11.17

Ensembl Transcript ID

BGIOSGA017640-TA

Ensembl Protein ID

BGIOSGA017640-PA

Length

3451

Source

Oryza sativa Indica Group 

 ORGANISM  Oryza sativa Indica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 5

Location

Chromosome 5:28292906..28296356

Sequence Coding Region

28296248..28296356,28295922..28296117,28295467..28295549,28295222..28295322,28295012..28295107
,28294863..28294916,28294260..28294408,28294046..28294163,28293406..28293493
,28293139..28293320,28292906..28293019

Genome Context

<gbrowseImage1> name=IndicaChromosome05:28292906..28296356 source=RiceIndica05 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=IndicaChromosome05:28292906..28296356 source=RiceIndica05 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>ATGCCTTACTGCGAGGTGGACAGGTACCAGAACGGCGACGAATGGGACGGCGTCCGCCTCTTCTACCGCCGCTTCGGCCGCGGCGCCACCAAGGTGCTCCTCGTCATCGGATTGGCGGGGACGCACGACTCGTGGGGCCCGCAGATCAAGGGGCTGACCGGGTCGCTGGAGCCGGCCGCCGACGACGAGGAGTCCGGCGACGCCGCGGCGGCGGAGGGGGACGACGGCGATGGCATCGAGGTCTGCTGCTTCGACAACCGCGGCGTCGGCCGGAGCTCCGTGCTCCCGCACAAATCCTACTACTCGACGGTGATCATGGCGAGGGACGCTCTGGCCTTGATGGACCATCTGGGGTGGAAGAAAGCTCATGTATTCGGCCATTCCATGGGCGCGATGATATCCTGCAAGCTGGCAGCCATGGCGCCGCACAGGATTTGCTCGTTGGCGTTGCTTAATGTTACTGGAGGTGGCTTCCAGTGCTTCCCGAAGTTGGATGGGCAGATGCTCTCGCTTGCATTCCGTTTCTTAAGGGCAAGAACTCCAGAAGAAAGAGCTCTGGTAGATTTGGAAACCCATTATACAAAGGAATATCTTGATGAGAAAGTTGGATCATGCACGAGGAGAACAATCCTCTATCAAGAATATGTGAAGGGCATATCATCGACAGGGATGCAGTCTAACTGTGGGTTTGAAGGTCAAGTTAATGCATGCTGGACTCACAATATGACAACTAAAGAACTAGATACAATTCGGTCTGCCGGTTTTCTAGTTTCAGTTATTCATGGGAGGTCTGACATTATTGCGCAATTATGTCATGCGAGACGACTTGCAGAAAGGCTTATTCCTGTTGCTAGAATGGTCGAACTTCATGGTGCGCATCTAGTAAGCCATGAAAGACCAGAGGAGGTCAACAATGCACTAATGGAATTAATAAAAGCCACAAAATCTATGATGAAACCTGAGGAATGGTCATCCCAGCCAGAGAATTCATCAGAAACCGGGGCTCTTATTTCTGCAAGACCTGTTTCCGTCACAATACGAACAGATGATGGGGGAAATGCCGCAATAGCAGTCTATAACTTACTTGCCAAGCTGCAACTAAGCTTTCTTTATGTCATAGGAGTGATACTGATGGGGTTTGAGCATATGAGGAACATTGTAAAAGTAATGAAGCCAAAACAAAACTCATGTAAATTACTCTCAGAGCCGTCGAGGAGACCTGGTATTTTCATGTCTCCTCAGTACTGTGGAGATGATGGTTTTAGAATAGCATCTCCGAAGACTTCCTGA</cdnaseq>

Protein Sequence

<aaseq>MPYCEVDRYQNGDEWDGVRLFYRRFGRGATKVLLVIGLAGTHDSWGPQIKGLTGSLEPAADDEESGDAAAAEGDDGDGIEVCCFDNRGVGRSSVLPHKSYYSTVIMARDALALMDHLGWKKAHVFGHSMGAMISCKLAAMAPHRICSLALLNVTGGGFQCFPKLDGQMLSLAFRFLRARTPEERALVDLETHYTKEYLDEKVGSCTRRTILYQEYVKGISSTGMQSNCGFEGQVNACWTHNMTTKELDTIRSAGFLVSVIHGRSDIIAQLCHARRLAERLIPVARMVELHGAHLVSHERPEEVNNALMELIKATKSMMKPEEWSSQPENSSETGALISARPVSVTIRTDDGGNAAIAVYNLLAKLQLSFLYVIGVILMGFEHMRNIVKVMKPKQNSCKLLSEPSRRPGIFMSPQYCGDDGFRIASPKTS</aaseq>

Gene Sequence

<dnaseqindica>1..109#240..435#808..890#1035..1135#1250..1345#1441..1494#1949..2097#2194..2311#2864..2951#3037..3218#3338..3451#ATGCCTTACTGCGAGGTGGACAGGTACCAGAACGGCGACGAATGGGACGGCGTCCGCCTCTTCTACCGCCGCTTCGGCCGCGGCGCCACCAAGGTGCTCCTCGTCATCGGTATGTCCGTACGCCGTCGATGAACCCATCGCCTTTGCCGGCGATCGAAAATTTTCTGCGTTTTTTTTTTTGCCTTTTTGTTTTCTTGGTTCTGATTTGAGAAATGGTGGGTGTGGTTGGGGGCGTGAAGGATTGGCGGGGACGCACGACTCGTGGGGCCCGCAGATCAAGGGGCTGACCGGGTCGCTGGAGCCGGCCGCCGACGACGAGGAGTCCGGCGACGCCGCGGCGGCGGAGGGGGACGACGGCGATGGCATCGAGGTCTGCTGCTTCGACAACCGCGGCGTCGGCCGGAGCTCCGTGCTCCCGCACAAATCCTACTACTCGTGAGTTTCTCTACTTCCTCCTCTCATCGTCGTCTTCTAGATCCAAATCTCCACCTTGTCTCATGATCGAGGAGGCAAAATCGTTCGTCGTGAGGTGTAGAAGCATCGCGCCCAATCTTGAGAGAGATCTGGAGGAGGGTAAAGATTGGCGTCTCATGTAGCTTTCGACGAGAATAAATCCACGTTCTACTCGATTCCAGCCGCGATTGCTTTCCACGAGAAAATATGTGACGGAGAGGAAAAGGACGGAGATATAATTTTCCTCGAACGCACGACGCGGCTGTGCGGGAAAAGTCAGACTAGTGGCGGCAATGGCGGTGTACTGGTGTTAGTTACTGTCTGACCATGTGAATGTTTCCATTGTCTTGACAGGACGGTGATCATGGCGAGGGACGCTCTGGCCTTGATGGACCATCTGGGGTGGAAGAAAGCTCATGTATTCGGCCATTCCATGGGTGAGTTCATGAGTCTCCATCTCTGCGACGCTGAATGATGATCATCAGAATTTTGGCGGATTGACTTCTTTTGAGGGGAATTGTGTAGTAAGTAGGAGTTTCTGTAAGCATTGCCATTGATGTTGGGTGGTCTTTGCAACACAGGCGCGATGATATCCTGCAAGCTGGCAGCCATGGCGCCGCACAGGATTTGCTCGTTGGCGTTGCTTAATGTTACTGGAGGTGGCTTCCAGTGCTTCCCGAAGGTACCGGAATGGAGAATTCTGCTTGTTTATACCTGGAACTTTGCAGACCTTGCAGGACTGTCGACTCTAATTTCCTCTGTAGTTCTCATCAATGAAGCTTGTCTGCATTTGCAGTTGGATGGGCAGATGCTCTCGCTTGCATTCCGTTTCTTAAGGGCAAGAACTCCAGAAGAAAGAGCTCTGGTAGATTTGGAAACCCATTATACAAAGGTGAAAATGCATCCATTTGTCATATGCCAATTGATGTAATTTTTTTCCCTTGACATTTTGAGTGTTAACATCCAATGCACCATGCTGCGATGCAGGAATATCTTGATGAGAAAGTTGGATCATGCACGAGGAGAACAATCCTCTATCAAGTGAGTTTAAAAGTGTTTGTTGTTGATGGTGTATCACCTAGATTTAAATCTTCATCATAACTTACGTAGCACCAAAGTCCAAAATTGTGGGAGGAGGAGCTTCCCAGGATTTAATTTTGGGAGGTGGTGAGTACTAAGGAGAACAGTATGTTGTTCAGCTGGCAGGAGCTGCAAGGAGCAAGCCGCTGGCCAGGGTTTGATCCTTGGTACTCATTACCTCCCGACATTAAATTCTGGGCAGGATTAAGTCCAAAATTGATTTGGACAAAATTAGTTGCGTGTACACATAGAATGATTCCTCTATGTCTGTTCTTTTGAACTGTATAAACTGTAAAGTATTACAGTCACAAGATCACAGCATTACAACTAGGCCTTTGTACCGGAAAAAAAAACAAAGCTTTACTTATTTCATTGATGTACCAAATTTCAATTATTCTGTACTATGTATTTTCAGGAATATGTGAAGGGCATATCATCGACAGGGATGCAGTCTAACTGTGGGTTTGAAGGTCAAGTTAATGCATGCTGGACTCACAATATGACAACTAAAGAACTAGATACAATTCGGTCTGCCGGTTTTCTAGTTTCAGTTATTCATGGGAGGTTAGTGGCGACTTGAGAAAAGCACACATCCCTTCCCCACAGTTCGCAAGCACACTGTGTGTTTGTTTCTCATCACTTGGTTTAAAAATGATGCAGGTCTGACATTATTGCGCAATTATGTCATGCGAGACGACTTGCAGAAAGGCTTATTCCTGTTGCTAGAATGGTCGAACTTCATGGTGCGCATCTAGTAAGCCATGAAAGACCAGAGGAGGTAAGCATGGACTTTGACAAAATGCTATATTGTTAGGCAGCTGAAATTATGCTGGAATGCTGAAAATATTCCTAAATAGCTGACCGAGCGAGGCAATATTAGAAATCATGGTTCCCTGCAAGCATCAAACTCTAACATAGATGCACTAATGGGCATGTAACTTTTGAGCCCAAACTTGGAAGAATGCTTTTGCTTATACCAGTTAGAACGTTACTAGATGCTTGTGCTGTTGCAACTTGCACAAATTCTTCCAAAGTTGCCAAACCGAACTAAAGGCAGGCCGTTCTCTGAAAGCATCATTCACCACCTAAACTGTACAAGGGAAGATGCTACTTTTGAAGAAAATTGTTTGGCCAACTCTGAAACTGCTTTTTAGGCACCAATGAAATGGTTATCCCAAACCTGAGATGGAATCATAAACATGTAACTTACAGAGTTATTTTAAGGCTTATACCTTCTCCAAATCGCTGTTCTTTTCTCTCATTATTTCATCATGCTTACAGAGTTGCAGGAAATTGTAAGTTGACTCATCTGAGTATTTCTCTATTGCAGGTCAACAATGCACTAATGGAATTAATAAAAGCCACAAAATCTATGATGAAACCTGAGGAATGGTCATCCCAGCCAGAGAATTCATCAGGTGAGCTTAGAAAGGCCAAACACCCCCGAAATCTCTTTCGAAGGCTATGTTCCAAGGCACACTTCTTACGCTACGTCTTTATCAGAAACCGGGGCTCTTATTTCTGCAAGACCTGTTTCCGTCACAATACGAACAGATGATGGGGGAAATGCCGCAATAGCAGTCTATAACTTACTTGCCAAGCTGCAACTAAGCTTTCTTTATGTCATAGGAGTGATACTGATGGGGTTTGAGCATATGAGGAACATTGTAAAAGTAATGAAGCCAGTAAGGGTCGCAGCAATCGAATCATAAGGTAGGTTTCAAGAACTACATCAAAATACCATCCAGAGTGTTTCTGAAATTGTAGCAAACACTTAACCGAGCTATGTTGCTTTAATCTGCAGAAACAAAACTCATGTAAATTACTCTCAGAGCCGTCGAGGAGACCTGGTATTTTCATGTCTCCTCAGTACTGTGGAGATGATGGTTTTAGAATAGCATCTCCGAAGACTTCCTGA</dnaseqindica>

External Link(s)

EnsemblPlants:BGIOSGA017640

Retrieved from "https://ngdc.cncb.ac.cn/ricewiki/index.php?title=BGIOSGA017640&oldid=46396"