BGIOSGA017854

From RiceWiki
Revision as of 02:26, 27 June 2012 by 127.0.0.1 (talk) (Created page with "{{IndicaGene| GeneName = BGIOSGA017854| Description = Putative uncharacterized protein| Definition = Oryza sativa Indica Group BGIOSGA017854, complete gene.| tag = OSJNBA0...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

BGIOSGA017854

Description

Putative uncharacterized protein

Definition

Oryza sativa Indica Group BGIOSGA017854, complete gene.

LocusTag

OSJNBA0018K15.21

Ensembl Transcript ID

BGIOSGA017854-TA

Ensembl Protein ID

BGIOSGA017854-PA

Length

3528

Source

Oryza sativa Indica Group

 ORGANISM  Oryza sativa Indica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 5

Location

Chromosome 5:25057685..25061212

Sequence Coding Region

25061166..25061212,25060238..25060361,25058308..25059486,25057685..25058107

Genome Context

<gbrowseImage1> name=IndicaChromosome05:25057685..25061212 source=RiceIndica05 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=IndicaChromosome05:25057685..25061212 source=RiceIndica05 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>ATGGAGGACCTGCTGGGCGCGGAGGTCGGCAAGAACGACTATGACTGGCTTCTTACTCCCCCTGGGACACCCCGTTGTCCTGTACTGGAGGTTGCTGAGAAAACACCATCCCCAAATATATTACCTAAGCGCACTGCCACTAGATCATCGTCAACCACCAGAGCGTCGAGGCTTTCAGTATCTCAAACAGAGAATGGTCATTCTACAGCTCCCACTAGACCAGCTAGAAGTAACTCTGTCACTCGCCCTTCTATTCAGTCCACTCTCATGTCTAGCTCCAACAGGACAGCAGTTCTCAATACAAGCATTTCCTCCGTCAGCTCAAGACCTACAACCCCAAGTAGGCGAAGCAGCACTGTTGTTGCACCAAAGCAATCAATTGCAGCTTCACGCCCTGTTCCAGCAAGGTCCTCCACTCCTGTTAAAACTCGTCCATCTACACCAACCAAAACTCGCCCATCTACTCCTGTGAGAACTCGTCAAACAGCCAATTCTACAAGCGACTCAGCTGCTGCCAGGACCACATCCGCTCAAAATTCAAGGCCATCAACGCCAACCTCTAGATCACGTGCTATGCCCAATTCATCTTCTGGTGCAATTCCTGCAATGAGCCGCCCAGGTGCATCTACAATTTCTGCAACAAGTCGCTCAAATGCATCTACAATATCTGCAACAAGCCGTCCTGGCTCATCCTCAAGTAATGTACCTGGGATAAGCCGTGCCACCTCATTGTCTTCAAGTACAGTTCCTTCAATGAGCCGCTCCAGCTCACGTTCATCCACACCTACACGCCAGCCTGCAATGCGCTCATCGGCCCCTGCTGTTGGTCGCTCGCCTTCTGTTGGGCGGAGTTCTAGCATCAGTAGCTTGACATCATCTATCAATCGACCTGCAGCAAATGGTGGCCGGAACTCAGCACCTTCATCGGCTCCGTCATCTCGTCCAAGTTCCCCTGGTCCACGACCTCGAGCTCCAGTTCGTCCACTTGATATCCCTGATTTTCCAAATGAAACACCACCAAATCTTAGGACAAAACTGCCTGAACGGCCACTATCTGCTGGTAGATCACGGCCAGGCATGGCTTTAGGAGTAAGATCAACCTCAAATACTGAACCATCAGCTGCCTCAGCTCCTGTAAAGAAGGTGTCTGTGCCTGCTATGAGTCGAAGTAAATTTTCTGATGCACCATCCAGGACACCTACTCTCACAAATGGACGCCAAAACAGACAGAGTGAGAGGTCTACTGTGGATAGTCAACCTAGTAAAGTCTCCAGGCCTGCCACAGGGACAGATAATGGATTTGGGATGACGATGTCAAAGAAGTCACTTGACATGGCAATCAGGCACATGGACATTCGGCAGAACTTGGGTGGAATCCGTGGCGCATCCCTCTTCCCGCATAGCATCCGCTCAACCGCCGGCAAGGGCAGGCCAGCTCGAATGTCAGATCCTGGGCACACCATCTCAAACGGAGACCACCGGCACTACGCCGACAATGGCAGCACCAACGGGCACTTCTCCGGGGACTCCAATGGGGCTCTCTCGCGCAACGGTGGCAGCTCGACCGACTCACCCGACCGGGGAAGCATCGGAGGCAAGGAGACGCTGAGCGAGCTGGACATGTACGGCAGCTCGCGCTACGAGGCGATGCTGCTGAGGGAGGACGTGAGGAACACGAGCTGGCTGCACGGCTTCGACGACAGCAAGCCCGACCAGAGCCCACTGTTCGACCACCGGTTCGAGCCGCTCCCAGAGCCCTTCAGCCCGCTATGA</cdnaseq>

Protein Sequence

<aaseq>MEDLLGAEVGKNDYDWLLTPPGTPRCPVLEVAEKTPSPNILPKRTATRSSSTTRASRLSVSQTENGHSTAPTRPARSNSVTRPSIQSTLMSSSNRTAVLNTSISSVSSRPTTPSRRSSTVVAPKQSIAASRPVPARSSTPVKTRPSTPTKTRPSTPVRTRQTANSTSDSAAARTTSAQNSRPSTPTSRSRAMPNSSSGAIPAMSRPGASTISATSRSNASTISATSRPGSSSSNVPGISRATSLSSSTVPSMSRSSSRSSTPTRQPAMRSSAPAVGRSPSVGRSSSISSLTSSINRPAANGGRNSAPSSAPSSRPSSPGPRPRAPVRPLDIPDFPNETPPNLRTKLPERPLSAGRSRPGMALGVRSTSNTEPSAASAPVKKVSVPAMSRSKFSDAPSRTPTLTNGRQNRQSERSTVDSQPSKVSRPATGTDNGFGMTMSKKSLDMAIRHMDIRQNLGGIRGASLFPHSIRSTAGKGRPARMSDPGHTISNGDHRHYADNGSTNGHFSGDSNGALSRNGGSSTDSPDRGSIGGKETLSELDMYGSSRYEAMLLREDVRNTSWLHGFDDSKPDQSPLFDHRFEPLPEPFSPL</aaseq>

Gene Sequence

<dnaseqindica>1..47#852..975#1727..2905#3106..3528#ATGGAGGACCTGCTGGGCGCGGAGGTCGGCAAGAACGACTATGACTGGTGATCATCGATTTCGTTTTCTTCAGTTTCTTTCTTTTTTTTTTGTTTGTTTCACCTTCGCTGATTTTGATTAATCTCCTTTTGTTGTCGGTGTGGTGATCTTCGTAGTGTATTTGGTACAGCACAAGTTTATGTGAAGTTGTAGCTGTATTTTTTTTTAAATCTGCTGGGTTGACTTGAATTGACGTGTTTTGGGCTGGATTTGTACTGAACGCTTGTTTTGGGTGGTTTGAGTAGGCTTGATCTTGGAGTGACATGTTTTTGTTTGTTTCGTAAAAGAGGATATGCTGCATTGCCCCCAGAAACGTCACTCTTCCGGTTGTAGTTGTGATGGTTGTGATCGTTTCTCGTTAAGGATGGCCTTGGTGATTGCAGTTGGTTGGAATTGAATCGCTGTGCTGAGCAAACGTGAAATATATGAAATATGCAATTGGATGGATAGGCAGTTAGGCAACCTGTGGGGACGGGCTCCTCTTCCCTTGGAAGGCCAATTTGATGTTAAACTAGGGGAGATATGCTGATACTAATTTGGGGATATTAGCAGGAGCATGCCACGAAAAGAAAGATTTATTTTTGGGCCAAATGTGCCATTAATATGTTGTTCCCACAATATATAATTGTAATCGCTTATGACTTTTTGCTGTGAAAACATAATCAATCTGTTTTGGTTGTTTTCTATAGTATTTTAAAAGCTTGTAGTAACTATATGGTTTCTTGCTTGATTGGTTGTCTGTTCCTCTAGTCCATACATGTTTAGCATTTGTTTCTACTATAATGAAACATAAATTGTGATGCTCTTCTCAGGCTTCTTACTCCCCCTGGGACACCCCGTTGTCCTGTACTGGAGGTTGCTGAGAAAACACCATCCCCAAATATATTACCTAAGCGCACTGCCACTAGATCATCGTCAACCACCAGAGCGTCGAGGGTATGTACTATGTATTATTTGTATTAGAATGGACGTGCTAAATTTTGGAGATTTGCTTTTGCAATCTAGTTTAAGGCTCTTTTTCTGCAGATATACTTCTAATTTCGTAGTTTCAGTGACAACCTGTACCCAATTTTCTAAAGAAATAAGGAACAATTTTATCCATGTTGCATTGTAACAACACTCAGTTTAGGGATCAATACCTCCAGATATATATCTCTGATGAATAGTTGCTGTCTGGGCTATGCATCCTTTTTCTTTGGCTGCATGATCTTTGGTAGTATGAAACATTTTGAGCTCCTACAACCTGTTTTCCTGTTAAGTTTTCATTAATGACACATAGTCTTAAGTCTTAACCAGTGTAGAAAAATGGGATGCAGCTGATATTCAAATAAGTGTTTTGATCTGAAAAGCTTTCAATGTTATTGTCATTTTATTTCTTCGAGGGAAAAATTTACTCATTGTTAGCAATTGAAGGTTTCACATTAGATTTCAATAATGAACAATGCATTGAAGTATTTCCCAATATATGCCACAACTAGATACAAAAACAACTTTATTTAATGAATTGCATATTGGAATTGAAGACCACCCAAACCAGGGAGTCTGGTGATAACACGTTTCTTGCTTCTCTACCTACTCGAACTACCTAGGCAGTAGTTGCATAATTACTCTCGGGGCTTTTTTTTCTCCTCCTTGATTAATCTTGGTTATAATTAGCATTTTTATGTCAAACTACGTTGTTTTGCAGCTTTCAGTATCTCAAACAGAGAATGGTCATTCTACAGCTCCCACTAGACCAGCTAGAAGTAACTCTGTCACTCGCCCTTCTATTCAGTCCACTCTCATGTCTAGCTCCAACAGGACAGCAGTTCTCAATACAAGCATTTCCTCCGTCAGCTCAAGACCTACAACCCCAAGTAGGCGAAGCAGCACTGTTGTTGCACCAAAGCAATCAATTGCAGCTTCACGCCCTGTTCCAGCAAGGTCCTCCACTCCTGTTAAAACTCGTCCATCTACACCAACCAAAACTCGCCCATCTACTCCTGTGAGAACTCGTCAAACAGCCAATTCTACAAGCGACTCAGCTGCTGCCAGGACCACATCCGCTCAAAATTCAAGGCCATCAACGCCAACCTCTAGATCACGTGCTATGCCCAATTCATCTTCTGGTGCAATTCCTGCAATGAGCCGCCCAGGTGCATCTACAATTTCTGCAACAAGTCGCTCAAATGCATCTACAATATCTGCAACAAGCCGTCCTGGCTCATCCTCAAGTAATGTACCTGGGATAAGCCGTGCCACCTCATTGTCTTCAAGTACAGTTCCTTCAATGAGCCGCTCCAGCTCACGTTCATCCACACCTACACGCCAGCCTGCAATGCGCTCATCGGCCCCTGCTGTTGGTCGCTCGCCTTCTGTTGGGCGGAGTTCTAGCATCAGTAGCTTGACATCATCTATCAATCGACCTGCAGCAAATGGTGGCCGGAACTCAGCACCTTCATCGGCTCCGTCATCTCGTCCAAGTTCCCCTGGTCCACGACCTCGAGCTCCAGTTCGTCCACTTGATATCCCTGATTTTCCAAATGAAACACCACCAAATCTTAGGACAAAACTGCCTGAACGGCCACTATCTGCTGGTAGATCACGGCCAGGCATGGCTTTAGGAGTAAGATCAACCTCAAATACTGAACCATCAGCTGCCTCAGCTCCTGTAAAGAAGGTGTCTGTGCCTGCTATGAGTCGAAGTAAATTTTCTGATGCACCATCCAGGACACCTACTCTCACAAATGGACGCCAAAACAGACAGAGTGAGAGGTCTACTGTGGATAGTCAACCTAGTAAAGTCTCCAGGCCTGCCACAGGGACAGATAATGGATTTGGGATGACGATGTCAAAGAAGTCACTTGACATGGCAATCAGGCACATGGTACGTTTCTTCCTGTGTTTCCATCAGATTAGTAAAACCCTGCTTTGAACCAGTTAGGATTCTGTTTGCATTTAGCCAGAATTTGTCATGTACATTTGATTCGACATTGCATGAACCATGACTGTGTTGCAGTGCCTTTTCTTGCCATACGCAAATCACAAGTTCAAAGAAGCTAACATTACTCCTTGAACTTGTGACAGGACATTCGGCAGAACTTGGGTGGAATCCGTGGCGCATCCCTCTTCCCGCATAGCATCCGCTCAACCGCCGGCAAGGGCAGGCCAGCTCGAATGTCAGATCCTGGGCACACCATCTCAAACGGAGACCACCGGCACTACGCCGACAATGGCAGCACCAACGGGCACTTCTCCGGGGACTCCAATGGGGCTCTCTCGCGCAACGGTGGCAGCTCGACCGACTCACCCGACCGGGGAAGCATCGGAGGCAAGGAGACGCTGAGCGAGCTGGACATGTACGGCAGCTCGCGCTACGAGGCGATGCTGCTGAGGGAGGACGTGAGGAACACGAGCTGGCTGCACGGCTTCGACGACAGCAAGCCCGACCAGAGCCCACTGTTCGACCACCGGTTCGAGCCGCTCCCAGAGCCCTTCAGCCCGCTATGA</dnaseqindica>

External Link(s)

EnsemblPlants:BGIOSGA017854