BGIOSGA018305

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Revision as of 02:33, 27 June 2012 by 127.0.0.1 (talk) (Created page with "{{IndicaGene| GeneName = BGIOSGA018305| Description = Putative uncharacterized protein| Definition = Oryza sativa Indica Group BGIOSGA018305, complete gene.| tag = OsI_194...")
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Gene Name

BGIOSGA018305

Description

Putative uncharacterized protein

Definition

Oryza sativa Indica Group BGIOSGA018305, complete gene.

LocusTag

OsI_19456

Ensembl Transcript ID

BGIOSGA018305-TA

Ensembl Protein ID

BGIOSGA018305-PA

Length

3972

Source

Oryza sativa Indica Group

 ORGANISM  Oryza sativa Indica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 5

Location

Chromosome 5:15774260..15778231

Sequence Coding Region

15778187..15778231,15777969..15778088,15777780..15777878,15777565..15777702,15777142..15777456
,15776701..15777057,15776499..15776618,15776267..15776392,15775755..15776160
,15774904..15775661,15774641..15774823,15774260..15774541

Genome Context

<gbrowseImage1> name=IndicaChromosome05:15774260..15778231 source=RiceIndica05 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=IndicaChromosome05:15774260..15778231 source=RiceIndica05 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>ATGTCGGTCTCACTGGAGGATCTCAAGAAGGAGAACGTCGACCTCGAGAGTATACCGATCCAGGAGGTGTTCGCCGTGCTCAAGAGCTCGCCGCAGGGGCTCACCTCCGCCGATGGCAACGGCCGGCTCGAGATCTTCGGCCGCAACAAGCTCGAGGAGAAGAAGGAGAGTAAGCTGCTCAAGTTCTTGGGGTTCATGTGGAATCCGCTCTCCTGGGTCATGGAGGCCGCCGCGATCATGGCCATCGCCCTCGCCAACGGAGGGGGGCGGCCGCCGGACTGGCAGGACTTCGTCGGGATCGTGACGCTGCTCTTCATCAACTCCACCATCAGCTTCATCGAGGAGAACAACGCCGGGAACGCCGCCGCCGCACTCATGGCCAGCCTCGCGCCGCAGACCAAGTTGCTGAGGGACGGGAAGTGGTCGGAGCAGGACGCGGCGATCCTGGTGCCCGGGGACATCATCAGCATCAAGCTCGGCGACATCATCCCGGCGGACGCGCGGCTGATGGAGGGCGACCCGCTCAAGATCGACCAGTCGGCGCTCACCGGCGAGTCGCTCCCCGTCAACAAGATGCCCGGCGACAGCATCTACTCGGGTTCCACCTGCAAGCAGGGCGAGATTGAGGCCGTCGTCATCGCCACCGGCGTCCACACCTTCTTCGGCAAGGCCGCCCACCTCGTCGACAGCACCAACAACGTCGGCCATTTCCAGAAGGTGCTGACGGCGATCGGCAACTTCTGCATCTGCTCCATCGCGGCCGGGATGCTGATCGAGATCATCGTGATGTACCCGATCCAGCACCGGCAGTACCGCGACGGCATCGACAACCTCCTCGTGCTGCTCATCGGCGGGATACCCATCGCCATGCCCACCGTGCTGTCCGTGACCATGGCCATCGGCTCGCACCGGCTGTCGCAGCAGGGCGCCATCACCAAGCGGATGACGGCCATCGAGGAGATGGCCGGCATGGACGTGCTCTGCAGCGACAAGACCGGCACGCTCACCCTCAACAAGCTCACCGTCGACAAGAACATGATCGAGGCACGCACAGCACACACCATTAATCTTTCACCGTTCGTGAAGGATCTCGACAAGGACGCGATCGTCCTGTACGCGGCGAGGGCGTCGCGAACCGAGAACCAGGACGCCATTGACGCCTCCATCGTCGGCATGCTCGCCGACCCAAGCGAGGCCCGTGCCGGCATCCAAGAGGTGCACTTCATGCCGTTCAACCCCGTCGACAAGCGCACGGCCATCACCTACATCGACACCAAAGATGGTTCCTGGCACCGCATCAGCAAAGGCGCGCCGGAGCAGATCATCGAGCTGTGCCGTCTACGGGACGACGTGAGCCGGCGGGTGCACGCCATCATCGACAAGTTCGCCGACCGCGGGCTGCGGTCGCTGGCGGTGGCGAGGCAGAAGGTGCCGGAGGGGAGCAAGGACGCGCCGGGCACGCCGTGGCAGTTCCTCGCCGTGCTCCCGCTCTTCGACCCGCCGCGCCACGACAGCTCCGAGACCATCCGTCGCGCGCTCAACCTCGGCGTCAACGTCAAGATGATCACCGGCGACCAGCTCGCCATCGGCAAGGAGACCGGCCGCCGCCTCGGCATGGGCACCAACATGTACCCCTCCAGCTCTCTGCTCAAAGACGGCGACACCGGCGGCCTCCCTGTCGACGAGCTCATCGAGAAGGCCGACGGCTTCGCCGGCGTCTTCCCCGAGCACAAGTACGAGATCGTGAGGAGGCTGCAGGAGAGGAAGCACATCTGCGGGATGACGGGGGACGGCGTGAACGACGCGCCGGCGCTGAAGAAGGCGGACATCGGGATCGCGGTGGCGGACGCGACGGACGCGGCGAGGGGGGCGTCGGACATCGTGCTGACGGAGCCCGGGCTTAGCGTGATCATCAGCGCGGTGCTGACGAGCCGCGCCATCTTCCAGCGGATGAAGAACTACACCATCTACGCCGTGTCGATCACCATCCGCGTCGTGCTCGGCTTCCTCCTCCTGGCGCTCATCTGGAGGTTCGACTTCGCGCCCTTCATGGTGCTCATCATCGCCATCCTCAACGACGGCACCATCATGACCATCTCCAAGGACCGCGTCAAGCCGTCCCCGTTGCCCGACGCATGGCGCCTCCAGGAGATCTTCGCCACCGGCATCGTCCTCGGCACCTACCTCGCCCTCGCCACCGTCCTCTTCTTCTGGGCCGTCCGCGACACCGACTTCTTCACGGTGACCACTCATCACCCAACCTCGCACGCCTCGCCGCCGCGCGCTCTGACGCCGTGTGTTTGTGGGCAGAGGACGTTCGGGGTGCACCCGATCGGAGGCAGCACGGAGGAGCTGATGGCGGCGGTGTACCTCCAGGTGAGCATCATCAGCCAGGCGCTCATCTTCGTGACACGCGCGAGGAGCTGGTTCTTCGTCGAGCGCCCAGGGCTCCTGCTCGTCGGCGCGTTCCTCATCGCCCAGCTGATGGCAACGCTGATCGCGGTGTACGCGAACTGGCCGTTCGCGAAGATGAAGGGCATCGGGTGGTCGTGGGGCATGGTCATCTGGCTCTTCAGCATCGTCACCTTCTTCCCCCTCGACATCTTCAAGTTCGCCATCCGCTACTTCCTCAGCGGCAAAGCCTGGAACAACGCCTTCGACAACAAGACGGCGTTCGCGAACGAGCTGGACTACGGGAAGAGCAAGAGGGAGGCGCAGTGGGCGATCGCGCAGAGGTCGCTGCACGGGCTGCAGCAGGCGGAGACGTCGACGGCGCTGTTCGACGACAACAAGGACTACCTGGAGCTGTCGGAGATCGCGGAGCAGGCGAAGCGCCGCGCCGAGATCGCCAGGCTACGGGAGCTGCACACGCTCAAGGGCCACGTCGAGTCGGTGGTCAAGCTCAAGGGCCTCGACATCGACACCATCCAGAACCACTACACCGTCTAG</cdnaseq>

Protein Sequence

<aaseq>MSVSLEDLKKENVDLESIPIQEVFAVLKSSPQGLTSADGNGRLEIFGRNKLEEKKESKLLKFLGFMWNPLSWVMEAAAIMAIALANGGGRPPDWQDFVGIVTLLFINSTISFIEENNAGNAAAALMASLAPQTKLLRDGKWSEQDAAILVPGDIISIKLGDIIPADARLMEGDPLKIDQSALTGESLPVNKMPGDSIYSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNNVGHFQKVLTAIGNFCICSIAAGMLIEIIVMYPIQHRQYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKNMIEARTAHTINLSPFVKDLDKDAIVLYAARASRTENQDAIDASIVGMLADPSEARAGIQEVHFMPFNPVDKRTAITYIDTKDGSWHRISKGAPEQIIELCRLRDDVSRRVHAIIDKFADRGLRSLAVARQKVPEGSKDAPGTPWQFLAVLPLFDPPRHDSSETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSSLLKDGDTGGLPVDELIEKADGFAGVFPEHKYEIVRRLQERKHICGMTGDGVNDAPALKKADIGIAVADATDAARGASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRVVLGFLLLALIWRFDFAPFMVLIIAILNDGTIMTISKDRVKPSPLPDAWRLQEIFATGIVLGTYLALATVLFFWAVRDTDFFTVTTHHPTSHASPPRALTPCVCGQRTFGVHPIGGSTEELMAAVYLQVSIISQALIFVTRARSWFFVERPGLLLVGAFLIAQLMATLIAVYANWPFAKMKGIGWSWGMVIWLFSIVTFFPLDIFKFAIRYFLSGKAWNNAFDNKTAFANELDYGKSKREAQWAIAQRSLHGLQQAETSTALFDDNKDYLELSEIAEQAKRRAEIARLRELHTLKGHVESVVKLKGLDIDTIQNHYTV</aaseq>

Gene Sequence

<dnaseqindica>1..45#144..263#354..452#530..667#776..1090#1175..1531#1614..1733#1840..1965#2072..2477#2571..3328#3409..3591#3691..3972#ATGTCGGTCTCACTGGAGGATCTCAAGAAGGAGAACGTCGACCTCGTCAGTGTTCTTCATCATTCCGCCAATATTGCGTTCATCCGTGTGTGCGTGTGATCCGTGTGTCATTGTGGCGTTGTTGGTTGGTTGGTTGGTTGCAGGAGAGTATACCGATCCAGGAGGTGTTCGCCGTGCTCAAGAGCTCGCCGCAGGGGCTCACCTCCGCCGATGGCAACGGCCGGCTCGAGATCTTCGGCCGCAACAAGCTCGAGGAGAAGAAGGTCAGAATTCAGAATCGTGTGTTCGATCAAGAACGAGTTTGTGTGTTTTGGGTCTCGCGTACGTATAAAATATGTGAAATTGGCGTGCAGGAGAGTAAGCTGCTCAAGTTCTTGGGGTTCATGTGGAATCCGCTCTCCTGGGTCATGGAGGCCGCCGCGATCATGGCCATCGCCCTCGCCAACGGAGGGGTACGCGTCGCCGTCGCGTCAGTTGTGTGTGTTTTGACCGCCGTCGATCTGACGCGTGCATGCGTGCGTGCGTGCAGGGGCGGCCGCCGGACTGGCAGGACTTCGTCGGGATCGTGACGCTGCTCTTCATCAACTCCACCATCAGCTTCATCGAGGAGAACAACGCCGGGAACGCCGCCGCCGCACTCATGGCCAGCCTCGCGCCGCAGACCAAGGCACGTCGCGCGTGCGCAGTGCGCCACGCCATGGACGAACACTGACCTATCTGTGCTCGACGGAATGACTGACTGACTGACTGATTGATCGATGGTCGGTGCATGCAGTTGCTGAGGGACGGGAAGTGGTCGGAGCAGGACGCGGCGATCCTGGTGCCCGGGGACATCATCAGCATCAAGCTCGGCGACATCATCCCGGCGGACGCGCGGCTGATGGAGGGCGACCCGCTCAAGATCGACCAGTCGGCGCTCACCGGCGAGTCGCTCCCCGTCAACAAGATGCCCGGCGACAGCATCTACTCGGGTTCCACCTGCAAGCAGGGCGAGATTGAGGCCGTCGTCATCGCCACCGGCGTCCACACCTTCTTCGGCAAGGCCGCCCACCTCGTCGACAGCACCAACAACGTCGGCCATTTCCAGAAGGTATCATACATGCATCCATCCGCCACTTCTCGTCGGAGAGGTGCCAACTGCTTGCTTGCTCTGCTCACCATCAATGGTGGTCAGGTGCTGACGGCGATCGGCAACTTCTGCATCTGCTCCATCGCGGCCGGGATGCTGATCGAGATCATCGTGATGTACCCGATCCAGCACCGGCAGTACCGCGACGGCATCGACAACCTCCTCGTGCTGCTCATCGGCGGGATACCCATCGCCATGCCCACCGTGCTGTCCGTGACCATGGCCATCGGCTCGCACCGGCTGTCGCAGCAGGGCGCCATCACCAAGCGGATGACGGCCATCGAGGAGATGGCCGGCATGGACGTGCTCTGCAGCGACAAGACCGGCACGCTCACCCTCAACAAGCTCACCGTCGACAAGAACATGATCGAGGCACGCACAGCACACACCATTAATCTTTCAGTTTTGCCGTTAATTTTTTTCCCTATCGATCGAGTAGTAGTTGTCATCAAATCAAATCGCGCACTTTGGATTTGGATTTCAGCCGTTCGTGAAGGATCTCGACAAGGACGCGATCGTCCTGTACGCGGCGAGGGCGTCGCGAACCGAGAACCAGGACGCCATTGACGCCTCCATCGTCGGCATGCTCGCCGACCCAAGCGAGGTAAGTGAAGCTCCTCAAGCTCGCACGGACACATCACACAAGCTCCCAATTTCCTCTTCTTCTACAAATAAATCTCACGACGTACGACGTGTCTGGAACGTGGCAGGCCCGTGCCGGCATCCAAGAGGTGCACTTCATGCCGTTCAACCCCGTCGACAAGCGCACGGCCATCACCTACATCGACACCAAAGATGGTTCCTGGCACCGCATCAGCAAAGGCGCGCCGGAGCAGGTCAGCCGGCCGGCCGGCCACCGTCAGCTCAGCCATGAATTCTGTACCATTTGCATTGCATCGGTGAATTTGATCTTGTTGGTGTGCGTGTGTGTGTGTGGCTTAGATCATCGAGCTGTGCCGTCTACGGGACGACGTGAGCCGGCGGGTGCACGCCATCATCGACAAGTTCGCCGACCGCGGGCTGCGGTCGCTGGCGGTGGCGAGGCAGAAGGTGCCGGAGGGGAGCAAGGACGCGCCGGGCACGCCGTGGCAGTTCCTCGCCGTGCTCCCGCTCTTCGACCCGCCGCGCCACGACAGCTCCGAGACCATCCGTCGCGCGCTCAACCTCGGCGTCAACGTCAAGATGATCACCGGCGACCAGCTCGCCATCGGCAAGGAGACCGGCCGCCGCCTCGGCATGGGCACCAACATGTACCCCTCCAGCTCTCTGCTCAAAGACGGCGACACCGGCGGCCTCCCTGTCGACGAGCTCATCGAGAAGGCCGACGGCTTCGCCGGCGTCTTCCCCGGTACGTTCCCAGTGACCTTCACAAGTACAAGATGGAAAAGCGAAGCCTTGGCGCAGAACTGATGATGAACTGATGATGATGATGATGATGCAGAGCACAAGTACGAGATCGTGAGGAGGCTGCAGGAGAGGAAGCACATCTGCGGGATGACGGGGGACGGCGTGAACGACGCGCCGGCGCTGAAGAAGGCGGACATCGGGATCGCGGTGGCGGACGCGACGGACGCGGCGAGGGGGGCGTCGGACATCGTGCTGACGGAGCCCGGGCTTAGCGTGATCATCAGCGCGGTGCTGACGAGCCGCGCCATCTTCCAGCGGATGAAGAACTACACCATCTACGCCGTGTCGATCACCATCCGCGTCGTGCTCGGCTTCCTCCTCCTGGCGCTCATCTGGAGGTTCGACTTCGCGCCCTTCATGGTGCTCATCATCGCCATCCTCAACGACGGCACCATCATGACCATCTCCAAGGACCGCGTCAAGCCGTCCCCGTTGCCCGACGCATGGCGCCTCCAGGAGATCTTCGCCACCGGCATCGTCCTCGGCACCTACCTCGCCCTCGCCACCGTCCTCTTCTTCTGGGCCGTCCGCGACACCGACTTCTTCACGGTGACCACTCATCACCCAACCTCGCACGCCTCGCCGCCGCGCGCTCTGACGCCGTGTGTTTGTGGGCAGAGGACGTTCGGGGTGCACCCGATCGGAGGCAGCACGGAGGAGCTGATGGCGGCGGTGTACCTCCAGGTGAGCATCATCAGCCAGGCGCTCATCTTCGTGACACGCGCGAGGAGCTGGTTCTTCGTCGAGCGCCCAGGGCTCCTGCTCGTCGGCGCGTTCCTCATCGCCCAGCTGGTAAGAAGTTCCTTAGCCGCCGCCGCCGCGGCGCGCGCAGTGACTCTTCTCCGGCGACTAATGGCGGCGAACGCACGCAGATGGCAACGCTGATCGCGGTGTACGCGAACTGGCCGTTCGCGAAGATGAAGGGCATCGGGTGGTCGTGGGGCATGGTCATCTGGCTCTTCAGCATCGTCACCTTCTTCCCCCTCGACATCTTCAAGTTCGCCATCCGCTACTTCCTCAGCGGCAAAGCCTGGAACAACGCCTTCGACAACAAGGTAAACACGGAGACACGGATTCTAATCACCCGGGTGGACGTCCATCCGTTTATCGCATGTTAATTATAGGAATGAGTTTGGTCGATTGCGCGCGAGCAGACGGCGTTCGCGAACGAGCTGGACTACGGGAAGAGCAAGAGGGAGGCGCAGTGGGCGATCGCGCAGAGGTCGCTGCACGGGCTGCAGCAGGCGGAGACGTCGACGGCGCTGTTCGACGACAACAAGGACTACCTGGAGCTGTCGGAGATCGCGGAGCAGGCGAAGCGCCGCGCCGAGATCGCCAGGCTACGGGAGCTGCACACGCTCAAGGGCCACGTCGAGTCGGTGGTCAAGCTCAAGGGCCTCGACATCGACACCATCCAGAACCACTACACCGTCTAG</dnaseqindica>

External Link(s)

EnsemblPlants:BGIOSGA018305