Os11g0683500

From RiceWiki
Revision as of 09:19, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os11g0683500| Description = Glycoside hydrolase, family 1 protein| Version = NM_001074995.1 GI:115486638 GeneID:4351127| Length = 6527 bp| Defi...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os11g0683500

Description

Glycoside hydrolase, family 1 protein

Version

NM_001074995.1 GI:115486638 GeneID:4351127

Length

6527 bp

Definition

Oryza sativa Japonica Group Os11g0683500, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 11

Location

Chromosome 11:29491411..29497937

Sequence Coding Region

29493964..29494145,29494501..29494630,29494940..29495089,29495178..29495411,29495483..29495654
,29495778..29495999,29496097..29496263,29496373..29496511,29496835..29497186
,29497668..29497863

Expression

GEO Profiles:Os11g0683500

Genome Context

<gbrowseImage1> name=NC_008404:29491411..29497937 source=RiceChromosome11 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008404:29491411..29497937 source=RiceChromosome11 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgccactaccggcgttcgtggcggcggcggcgaggctcgccgtcctcgtggccgcggcggcgacggcggccaatgccgcctcctacgcgcggtaccggcggcgccacctccgccgcatccccagccccatcgacgagtccgccgatcccctcgccgacttccgcgcctttccctcctccgacgctgacgactcagaggaggataatttcttctttgggctagcaacagcgcctgcgcatgttgaggacaggctagaagatgcttggctccagtttgcaactgaaacttcctgcgatgacaatggaaacgtgcgcgaccagaggccagtagatgcactgatggcatctgctgctggtgatggaggctcccagcaatcttggaggtcaacaggtggggaaaatattggtgatagagagcagaggaaaccacttagggtagccatggaggctatgctcagggggtttgaaattcttgctgagagtggagaatctgctggcggcgataactgcagccacaatgttgctgcttggcataatgttccatgcccgcaagaaaggcttagattttggtctgatcctgatgctgagttgaaacttgctaaggagaccggcatcagcgttttccgcatgggggtagattgggcaaggttaatgcctgaggaaccaaccgaagaattgaagagctcagttaattttgcagcacttgagcggtatagatggatcattcaaagggttcgcgaatatggaatgaaagtaatgcttactctgtttcatcactcacttccaccttgggctggaaaatatggcgggtggaagatggaaaaaactgtcacctatttcatggattttgtgaggcttgttgttgatcgtgtatccaatttagtggactactgggtgattttcaatgaacctcacgtttttgtgatgctaacttattgtgccggtgcttggcctggtggagaccctaatgcaattgaagtagcaacatctactctgccaactggtgtatacaatcaggctttgcattggatggctattgcacattctgaagcctatgactacatacattcgaaaagcaagaacgaaaggaagccaatagttggtgttgcacaccatgtatcgtttacaaggccatatgggctatttgatgttgctgctgtcgcgctagctaactcattgaccctttttccttacgtggatagcatatgtgataaattggacttcattggaatcaactactatggacaggaggttatatcaggacctggtctaaagcttgtggataatgatgagtatagtgaatctggtcgtggggtttatcctgatgggctgttccgcatcctgattcaattcaatgaacgatataagagattaaatataccttttgtcattactgaaaatggagtttctgatgagactgatctgatacggaaaccatatatactggaacacttgttagccacatacgctgccatcattatgggtgtccgtgtacttggttatttgttttggacaacatcagataattgggaatgggcggatggctatggtcccaagtttgggcttgttgctgttgaccgtgctaataacctagcacggaaacctcggccttcatactttttattctccagggttgttacaactggaaaaattacaagacaggacagaatgtctgcttggagggagctgcaacaagctgcagttcaaaagaaaacacgtccatttttcagggcagtggataagcatggtcggatgtatgcaggtggtctagatcggcctattcagaggcccttcatattgcgggattggagatttggtcactataaaatggaaggcttgcaggatcctttgagttgctttataagatgcatttttgcaccattttcacgccaaaagaagattcactacatagaagatgatgttatttcttattctattaactga</cdnaseq>

Protein Sequence

<aaseq>MPLPAFVAAAARLAVLVAAAATAANAASYARYRRRHLRRIPSPI DESADPLADFRAFPSSDADDSEEDNFFFGLATAPAHVEDRLEDAWLQFATETSCDDNG NVRDQRPVDALMASAAGDGGSQQSWRSTGGENIGDREQRKPLRVAMEAMLRGFEILAE SGESAGGDNCSHNVAAWHNVPCPQERLRFWSDPDAELKLAKETGISVFRMGVDWARLM PEEPTEELKSSVNFAALERYRWIIQRVREYGMKVMLTLFHHSLPPWAGKYGGWKMEKT VTYFMDFVRLVVDRVSNLVDYWVIFNEPHVFVMLTYCAGAWPGGDPNAIEVATSTLPT GVYNQALHWMAIAHSEAYDYIHSKSKNERKPIVGVAHHVSFTRPYGLFDVAAVALANS LTLFPYVDSICDKLDFIGINYYGQEVISGPGLKLVDNDEYSESGRGVYPDGLFRILIQ FNERYKRLNIPFVITENGVSDETDLIRKPYILEHLLATYAAIIMGVRVLGYLFWTTSD NWEWADGYGPKFGLVAVDRANNLARKPRPSYFLFSRVVTTGKITRQDRMSAWRELQQA AVQKKTRPFFRAVDKHGRMYAGGLDRPIQRPFILRDWRFGHYKMEGLQDPLSCFIRCI FAPFSRQKKIHYIEDDVISYSIN</aaseq>

Gene Sequence

<dnaseqindica>3793..3974#3308..3437#2849..2998#2527..2760#2284..2455#1939..2160#1675..1841#1427..1565#752..1103#75..270#aaaattcgacgaagaaaaaaaaaataaaattcggcggtaaataagcggggcgaaggaagaagaaaatcacggaaatgccactaccggcgttcgtggcggcggcggcgaggctcgccgtcctcgtggccgcggcggcgacggcggccaatgccgcctcctacgcgcggtaccggcggcgccacctccgccgcatccccagccccatcgacgagtccgccgatcccctcgccgacttccgcgcctttccctcctccgacgctgacgactcaggttcgtctcactcactttcgtttccctctgtaaagccctagccatgtaagcgctaatcgttgaggtcaatggattattgcattggggttgggagattatgtatttgattagtctttgtggatgcccagttgggaggttttaggttttatcaatttttgagatggggaattgttggcataatcgatttgaatttaatcaattaatccttatattcaattagttttttgatcaattagtcaatgtcaatacgagagtactgaaaagaactttgtttgcccattgcaaatgtcctgttacatcatacatggggataagattactcactataggcacagttatgctttgcacctctctctcattaattttctctataaattcgagcattcaaactgtgttttaacatttaaggccatcactggctggaagcaacaattgtcaaggcaatatggaagccctgatggtgtggcatatttgtttgcagaggaggataatttcttctttgggctagcaacagcgcctgcgcatgttgaggacaggctagaagatgcttggctccagtttgcaactgaaacttcctgcgatgacaatggaaacgtgcgcgaccagaggccagtagatgcactgatggcatctgctgctggtgatggaggctcccagcaatcttggaggtcaacaggtggggaaaatattggtgatagagagcagaggaaaccacttagggtagccatggaggctatgctcagggggtttgaaattcttgctgagagtggagaatctgctggcggcgataactgcagccacaatgttgctgcttggcataatgttccatgcccgtaagtacatgagtatagaatctctaatgagctaatttatctcagttctgtactccaaagaacaaatctccttgcctgtaaagtcacctagagtcacttctcatcttaactatctctccaggaagagttgttgtctttcaatattgtagcttctttccaagtctagatatgacttcgatagtgctactatgtagtggtgggtcccaaggataaaaaacgaatgcatgcttttaaaaaaagtaattcaagattctagctttccttccaaatgtagatgtctttggatgttgtatgttagcaaactctgatcatttttttttcaggcaagaaaggcttagattttggtctgatcctgatgctgagttgaaacttgctaaggagaccggcatcagcgttttccgcatgggggtagattgggcaaggttaatgcctgaggaaccaaccgaagaattgaagagctcagtaagttcatagttatgcacgtgcctctttttacctttatattcatccttctttttccagcatgatgatctcagtaccggtgaaataagatagacatctctttctctaggttaattttgcagcacttgagcggtatagatggatcattcaaagggttcgcgaatatggaatgaaagtaatgcttactctgtttcatcactcacttccaccttgggctggaaaatatggcgggtggaagatggaaaaaactgtcacctatttcatggattttgtgaggtaccttttgagggcagtcaaattgacctgccaatacattctctccattgggaattgttcaataatttattagattttgatagttggggctgtgcaggcttgttgttgatcgtgtatccaatttagtggactactgggtgattttcaatgaacctcacgtttttgtgatgctaacttattgtgccggtgcttggcctggtggagaccctaatgcaattgaagtagcaacatctactctgccaactggtgtatacaatcaggctttgcattggatggctattgcacattctgaagcctatgactacatacattcgaaaaggttggttctacataatgtattatttgcagtgcccttattccagtgattacctggtattttttattcgataatcaaggagttggtttcctctggttttcttattatttatttcttgattaacagcaagaacgaaaggaagccaatagttggtgttgcacaccatgtatcgtttacaaggccatatgggctatttgatgttgctgctgtcgcgctagctaactcattgaccctttttccttacgtggatagcatatgtgataaattggacttcattggaatcaactactatggacaggtaagcaaattatttgctgcttaatgaatggctatgtaagtgaccgagttaattctcccatttccatgcaggaggttatatcaggacctggtctaaagcttgtggataatgatgagtatagtgaatctggtcgtggggtttatcctgatgggctgttccgcatcctgattcaattcaatgaacgatataagagattaaatataccttttgtcattactgaaaatggagtttctgatgagactgatctgatacggaaaccatatatactggaacacttgttagccacatacgctgccatcattatggtcctttcttaacctttaagcaaacatgttttagtctgtgctcatggagatggaacttccaacacttaaacaacataatgttttatagggtgtccgtgtacttggttatttgttttggacaacatcagataattgggaatgggcggatggctatggtcccaagtttgggcttgttgctgttgaccgtgctaataacctagcacggaaacctcggccttcatactttttattctccagggtaactttttcgttttagcaaatcatgaaaccatggtacattgtttacctattatctcagtctcttacgttgtctaactcctaggtgaatttttgtcttctgttgaaatattgaaaactaactagatctactccttgtttctgaagtttaaagttcattcattttcttttatcagagtaattttatggctagataaagcactaaacgtgtctagacctgagattacctccagcattttttttgccactttttacgttcatgcatgtggtggctatataactagcatgataagatgcatctgaactccaggttgttacaactggaaaaattacaagacaggacagaatgtctgcttggagggagctgcaacaagctgcagttcaaaagaaaacacgtccatttttcagggcagtggataagcatggtcggatgtatgcaggtatgtattgtttctttttgaatgattctgatgatctgatcagcaggtaaattggcaggatcaataagtagtggcttgttttactaaaaacaacttgattaggattagcaacagacattgacttcttatgtcaatagatactaccatcaatggagctccttagaattaagattagtgttgcttctcgttttgcttctttttattaataatttctgatttaatgcccatctcttctgagttaaggtattttttgaactaccacaaggccttagaaaactatatacaaaaatataagttcaataagatccatgttttcctgcttgtctaagcattggtgtctccttttgtcttacaggtggtctagatcggcctattcagaggcccttcatattgcgggattggagatttggtcactataaaatggaaggcttgcaggatcctttgagttgctttataagatgcatttttgcaccattttcacgccaaaagaagattcactacatagaagatgatgttatttcttattctattaactgatgccctgctactatagttgctactttaagttcagtttcttatgttgcaaccaaaaacacatccatgttttggtgagtcaagagcaacaatgcattttgcttttcgattctttgtgcatgttacctatttagaacatctagtttggaatcttttgtaggttattacttttttcttgatgaagtaaataaaaagagtcttggaaatggaaagttcaacttcttcaggtaattactacatgggtttactatttgtataatagtacacatttagattccatacacttattttattctcatctcctttttttggtttaagatgtgtttgatctaatgtcatgtagattgtattctaaatatcttctaagccaaaatatcttttgtggatctacttttgctggctcatagctatgtcctgcacttcttaattgaagatgcttcctgggaagtgtttgggtgaacagatgggcacctgcctaccttatttagatctctgaccctccaggctacatccagatctgtgcgtgtagacacgttcaagtagtgagttaatggttcctattgtttcctcatatagatttttttacttttctattgtaaaaaaaaacacttttcacccactgtatataggaaatgaataaattcttttcatttatagtgtaagattcagtcttaattcatggagctgaggcataagtagtagaaggaaatgaataagatttgcaaattgcagcagaggaattcaagggttttgttatcccataacttgtgtacgtgagttttcatattaaacagtggtactacatttttgacatgcaaagcctagctgcctaagccatcagatgcatttggagggatcattgcagatgtatcctcctgcatgacctcatggaatcatgcacgtttcacatttccaaatttcacacagccagattttattggaaaaattactggtttgttaactggccttccaaacctttttttatgggcatggcatgcattttatttactaggatgtggcatgtattctttagtggaactagccactaacttctttattcatgctgcattacaatctaaaaagaactaaactttatatgcacacagccctatattcataatctggaatgtggtattttttatccacaaccccgtaatcactaaccacacctctcctgtacagtttttctaatatatataattaaccataggggcctccctactgttcttcattcaaagaaactgttgtcatgatgtcggtcttttgactagggatcttaactagggcgaatatcaaaagaccatacatctttagtacaattgtcatgcaaatttattctcatgtggtgtcatttattttcagtgaaacaaaaacagggggaaaagaaagtatctcacaggagaaacaagggagcatataatcatatgattttttatattatggcgcatattgcgttacatgagctatttagtacagaacaggaagttgtttagttgccttacagggctattgatgccattgcaatcatacgtaagcagtatatatttaggaaagacttttgtgttatcgccttttgaagtacataagcaaatagtagatcatcagtgttcattatttcagtattataggattgcagagctggtaatgatctgtggaccaagggatggcagaatgatcaattgttcttgataacttgatgagctctctccattagtaccactggttttggtatggcacaggtaatcttctcctccttctctggtatctggaaagctgatgcagggaaggttttcgtaatcccagcaatgctcttgcagatgagtttcccagtcttttgttcatcaagggcaatctcctctactggtacccacaccatgagctccctagtcttgatccctttgactttcttgatcctccccttctctgcaaaagcagtgatctcagtgccataagataccaaccttcctaagctttggaagacatggtctatcctcttcttttgcttgagccacacaaatccagtttcctcaacatagccacactccattatgtccttcaagggaagaaggccatttgggaggcctgcttccttgagcaagagccttgtgcattgttgacagatctcatcatcatagtagacctccgccttggccttgatttcatcagcaataacaagagccatcttctatgtatctcttctttttttcagctctgaggcagtttttggaggcttggctttgtatggtattatggttgtgttgttcatagtgaaacttggctacctttatataggaaatgccttgtcaaattgtgccttaacatgcataggattttccatcttgccattgtcagttaaggatggacaatatatcatgctcatataaaagctgtagggtcctctggctgagagtacttttgcagtgatgcaaaaatatcatccaataaactgtaatatgaccttgtattatgtgaatatatagttcaaacgtggatcaaaagacaacggtgctaaaaataggagtgtaattgaaataattaatggtatttggagttggc</dnaseqindica>

External Link(s)

NCBI Gene:Os11g0683500, RefSeq:Os11g0683500