BGIOSGA018882

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Revision as of 02:42, 27 June 2012 by 127.0.0.1 (talk) (Created page with "{{IndicaGene| GeneName = BGIOSGA018882| Description = Tpr domain containing protein| Definition = Oryza sativa Indica Group BGIOSGA018882, complete gene.| tag = | tid = B...")
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Gene Name

BGIOSGA018882

Description

Tpr domain containing protein

Definition

Oryza sativa Indica Group BGIOSGA018882, complete gene.

LocusTag

'

Ensembl Transcript ID

BGIOSGA018882-TA

Ensembl Protein ID

BGIOSGA018882-PA

Length

3568

Source

Oryza sativa Indica Group 

 ORGANISM  Oryza sativa Indica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 5

Location

Chromosome 5:1944713..1948280

Sequence Coding Region

1948278..1948280,1947705..1947839),complement(1947466..1947594,1947091..1947241),complement(1946927..1947009
,1946699..1946800),complement(1946301..1946414,1945476..1945661),complement(1945292..1945386
,1945119..1945216),complement(1944713..1944843

Genome Context

<gbrowseImage1> name=IndicaChromosome05:1944713..1948280 source=RiceIndica05 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=IndicaChromosome05:1944713..1948280 source=RiceIndica05 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>ATGGAAGCTAGGGCAAGGACATACGGGTCTTCAGGAGCTTCCCCAGGAAATCTGGGTGATCGGTACGACAATTATGCGAACTACTCAAGCTACTTAAATGATGAGCCAATGCCTGATGCCGCATCAGAAAAGGAACAGGGTAATGAGTATTTCAAACAGAAAAAGTTTGCCCAGGCTATTGAGTGCTACTCAAGAAGTATCGGACTGTCTCCTTCAGCAGTTGCTTTTGCAAATAGAGCTATGGCATATCTTAAACTAAGAAGGCAATCTTATATTTTTTATGTGATATTCACTAGGTTTGAAGAGGCAGAGAATGATTGCACTGAAGCTCTGAATCTTGATGACCGCTATGTTAAAGCATACTCACGCAGAATTACAGCAAGAAAAGAACTTGGGAAGCTTAAGGAAGCAATGGATGATGCTGAATTTGCTGTCAGTATTGATCCTAACAATCCAGAGCTCAGGAAGCAGTATTCTGAGATAAAAGAATTACACATGAAGGAAGTGGCTAACAGAAGTAAGCCAACCAAACATACAGTTTTTAAATTTGATAAATCTGGAGATAAAAAGGACACTTCCCATGCACCAAGTAGTTCCCAGAAGGACAGTTTCATGGAAGTTGATCCGCCTAGTAGAGTTGCAGTGGAGATTAGAGAGAAAGCAGATGGTACATCCAAAGGTGGATCTGGAGTAATCTTCAAAGACAGTACCGTACAGCCATCTCGAGATGCTAAACAGAAGCCTGGACCAGAAGCATCAATACAAGATCTTGCATCTCGTGCTGCTTCACGGTATATGGCCAGCACTGTAAAAAGTGTGAAGACACCAAAAACAGCATATGATTTTGAGGTTTCTTGGAGAGCTCTCTCTAATGACACTGCCAAGCAAACACAGTTATTAAAGTCAATTCCACCATCAAGCCTACCAGAGATTTTCAAGAATGCACTTTCAGCTGCTTTTCTGATTGATATCGTGAAGTGCACAACCTCAATTTTCCGGGAGGACACAATGTTAGCTGTTAGCATTTTGGAGAATTTGGCAAAAGTTCCCCGTTTTGACTTGATAATCATGTGCCTTTCATCCATGCATAAATCTGAATTACGGAAGGTCTGGGATCAAATATTCCTTGCTGAAACTGCATCAGCGGATCAGGTTGAAGCCCTCAGGCAACTTCGAGCCAAATATATTCAGGAAGGATTGCAGGATAACATGTTCACTTCAAATTAA</cdnaseq>

Protein Sequence

<aaseq>MEARARTYGSSGASPGNLGDRYDNYANYSSYLNDEPMPDAASEKEQGNEYFKQKKFAQAIECYSRSIGLSPSAVAFANRAMAYLKLRRQSYIFYVIFTRFEEAENDCTEALNLDDRYVKAYSRRITARKELGKLKEAMDDAEFAVSIDPNNPELRKQYSEIKELHMKEVANRSKPTKHTVFKFDKSGDKKDTSHAPSSSQKDSFMEVDPPSRVAVEIREKADGTSKGGSGVIFKDSTVQPSRDAKQKPGPEASIQDLASRAASRYMASTVKSVKTPKTAYDFEVSWRALSNDTAKQTQLLKSIPPSSLPEIFKNALSAAFLIDIVKCTTSIFREDTMLAVSILENLAKVPRFDLIIMCLSSMHKSELRKVWDQIFLAETASADQVEALRQLRAKYIQEGLQDNMFTSN</aaseq>

Gene Sequence

<dnaseqindica>1..3#442..576#687..815#1040..1190#1272..1354#1481..1582#1867..1980#2620..2805#2895..2989#3065..3162#3438..3568#ATGGTACGAGCTCTCATGACCTCTCCTGCCCCTATTAGGTTTAGTAAAACTTCCCTCTCCCTGTAGCTTCATTCACTGTCACAGCTTGGGTAAACCTAGATTTTTCTCTCTCTTTTTTTTTTTGGTTTACCCAATGTATGCTCGCATGGAAAGTATGAACGTATGCTAGTGAATTGGTCTGAAATGTAGGTTCGTTTTAATGGAGCATCAGGTTCACACTGATAATTGTTTCTTTTTGGTGGAATTAACTTGTCTCGATGGCATAGTTCGAGGTTACTTTTAGGATGCATCAACTAATTCGATGCGATTGCGCAAGATGAAAAGATGTCTCCAATTCGAACCTATATATCTATTGTCAGTGTTTGAGTTTGAAATGAAGTGGTTTTTCTCTTGTGTCTGGGGGTTTTGGTTCAGTAATAAATCAGAATATACTGTCTGCAGGAAGCTAGGGCAAGGACATACGGGTCTTCAGGAGCTTCCCCAGGAAATCTGGGTGATCGGTACGACAATTATGCGAACTACTCAAGCTACTTAAATGATGAGCCAATGCCTGATGCCGCATCAGAAAAGGAACAGGTTGGGATTAAGTATTGCATCTCTTGCTACTCTGTTCAAACTTTAGACTGTTGTAGAGGGACAATCCTTTGAAGCTAAAACATTGGTTGTTCTGTTTGATTTTTTTTCAGGGTAATGAGTATTTCAAACAGAAAAAGTTTGCCCAGGCTATTGAGTGCTACTCAAGAAGTATCGGACTGTCTCCTTCAGCAGTTGCTTTTGCAAATAGAGCTATGGCATATCTTAAACTAAGAAGGCAAGTAGCTGCAACACTGTGTTTGCATTCGCTAGACTATGGTGTTCATTAATATGATTACAGATACTTAAAAACCTTAGTTGGATCTCTATTCTGGAACCATTATTTAATAAGTACTAGCTACCAACAATTTCAGACTGTAGATATGCTTTTATGCTACTTGTGATGCGTTTCATATTTCTGCTGATATACAATTTCGATGTGCTTTTACGTTTGCTCTTGGTGTAGTCTTATATTTTTTATGTGATATTCACTAGGTTTGAAGAGGCAGAGAATGATTGCACTGAAGCTCTGAATCTTGATGACCGCTATGTTAAAGCATACTCACGCAGAATTACAGCAAGAAAAGAACTTGGGAAGCTTAAGGAAGCAATGGATGGTATCCTATTTTTGGCCACCAGTCTTTCCTTTTTTAGCTTAATTGTTGTCTTGATGAACACTAACAAGCAGGTCCATACAGATGCTGAATTTGCTGTCAGTATTGATCCTAACAATCCAGAGCTCAGGAAGCAGTATTCTGAGATAAAAGAATTACACATGAAGGTGAACAATCTTTACTTCAGAATTTTCGTCAGACATCTGATTTAAAATAGCTTTTGTGTTACTAACAAAGTTTTGTGTTGATTCCTATCCTACGAAAGTCAATATTAATGTGTTTTAATTCTGCAGGAAGTGGCTAACAGAAGTAAGCCAACCAAACATACAGTTTTTAAATTTGATAAATCTGGAGATAAAAAGGACACTTCCCATGCACCAAGTAGTTCCCAGAAGGTAGGTTTGTAGATTTACAGCTTCATGATACTTATGTAGTTTTCATTGTTTATCATCATGTGTAATAATTAATTTTCTATTAATGAGGTTTAAACTATGCACTTATTAATGAGGATTAACATGCCTGCCCTAACACATTCAATGCACCTAGTACATGTCGTGCACATGGCCCAACACTTTTGAACTCACCTTGTTCTGTTTATTTATAGTTGGTTATGTTCATCATGGGTATAATCAGCTAATTTGTTTTGTTGTGTAATACCTGATGCATTTGCATTCTACAGGACAGTTTCATGGAAGTTGATCCGCCTAGTAGAGTTGCAGTGGAGATTAGAGAGAAAGCAGATGGTACATCCAAAGGTGGATCTGGAGTAATCTTCAAAGACAGTACCGTACAGGTGTTCTTTTGCTACATTGTTTTTCCAGCTATATAACAAACATGCACTTTGATTTGAGTGTTGGTATACTTCTCTAGTTATACCATGCATAGTTAGCGCCATCTATGATAATGTGCTACATGAGGCAGTTTGTAGGCCTCATGTATTACCTACATATCAAGCCACCAGTGACTTAGTAGGCCTGCTGTCTTCGTACCATTGACTCTGCACCATGTCTGCTTGAGTTCCAGCACAGCTTGCATCACCCCTTTACTTTTCCTGCTTGGTTTACACCTTGCCTCTGGGCCTCTGGCGTTGCCACTATGGCTCACAGTCAGAATTTGCACTTCTTATTTCATCGTTATATTGTGCTTCTCATGAAAGAACTGGCCCCCACTGAAAATGGACAAGCACCTTCATGTGATAATGTCAGAAGAGGACATGGTTGGTGGTAGCATGATCTGTTGCAACCTTAGGTTGTGAATCAGTGTGCTAGGGCTGTAGGCAAAGCAAAGGAGTTCTGCAAAGTTTGCAGGCTTCGTGTTAAACAATCATGATGTGCATTCTGCTTGGTCGTTGGACCTAAGAACCATTGGTAGTACAGGTAGATTTTTCACAGTTCTGTGTTTTCTTATGTTATGTTTCAATTAATTGGTGCAGCCATCTCGAGATGCTAAACAGAAGCCTGGACCAGAAGCATCAATACAAGATCTTGCATCTCGTGCTGCTTCACGGTATATGGCCAGCACTGTAAAAAGTGTGAAGACACCAAAAACAGCATATGATTTTGAGGTTTCTTGGAGAGCTCTCTCTAATGACACTGCCAAGCAAACACAGTTATTAAAGGTTTGTTCCTAGTCCTTCTGTTCTCTACTGTTGGATACCTTTGCTTGCTCATTCTTGATGTGCAAATTTCTTATTTGTTTTGCAACCAGTCAATTCCACCATCAAGCCTACCAGAGATTTTCAAGAATGCACTTTCAGCTGCTTTTCTGATTGATATCGTGAAGTGCACAACCTCAATTTTCCGGTGAGCTTATCTGTTTTATGCTTGGTACTGGTTTGGAACCATGGCTGCTTTTGTTAATACTAATTACATACCCAGGGAGGACACAATGTTAGCTGTTAGCATTTTGGAGAATTTGGCAAAAGTTCCCCGTTTTGACTTGATAATCATGTGCCTTTCATCCATGCATAAATCTGGTAAGTTTGATCTTGCAACCCTTTGTTATCTTCATTTGTCCATCATGCCTGGCAGTTACTTATTGTCAGGACATTCATGAGAAGCATAGGCAAATAAAATGATTTTTGGAATGCGATAGTAGTAATTTGTTGTGTTCGGCCATTCCTTTATGGATAGTTAGTTTAAACTTTGAAGTGCACAAAGATTATTCGAAAGTTTTTTTTAATGTAGTCAGCACGACATCTTTAGAAAATACTCTACTTGCTGATGCTTTTTTCTTTTCTTTTGTCACAAGAATTACGGAAGGTCTGGGATCAAATATTCCTTGCTGAAACTGCATCAGCGGATCAGGTTGAAGCCCTCAGGCAACTTCGAGCCAAATATATTCAGGAAGGATTGCAGGATAACATGTTCACTTCAAATTAA</dnaseqindica>

External Link(s)

EnsemblPlants:BGIOSGA018882

Retrieved from "https://ngdc.cncb.ac.cn/ricewiki/index.php?title=BGIOSGA018882&oldid=47638"